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The map label for this gene is ctaC [H]

Identifier: 78778830

GI number: 78778830

Start: 421003

End: 421806

Strand: Reverse

Name: ctaC [H]

Synonym: PMT9312_0445

Alternate gene names: 78778830

Gene position: 421806-421003 (Counterclockwise)

Preceding gene: 78778836

Following gene: 78778829

Centisome position: 24.68

GC content: 30.72

Gene sequence:

>804_bases
TTGTTAAATAAAAACATTTATTTAATACTAATTATTTCACTCGTTTTTGCTATATCTTTTTGGATTGGATTTAATGTCAA
TTTGCTCCCAATTGAAGCAAGTATTAATGCACCAATTTACGATGAACTTTTTAAAATTCTTTTCATCATTGGCTTAATTA
TTTTTATAGGAATGACAATAGCAGTTATTTATAGCTTATTTAAATTTAGGAAAAGAAATGATCAGATAGGCGATGGTATA
GCTTTAGAGGGAAACTTAAGCTTAGAAATTTTATGGACAATTATCCCTTCAATAATTGTTTTATTAATAGGATTATATAG
CTACAACATCTACGACCGAATGGGAGGAATGAAGGAACTAAACCACAATCACGAAATGATGCGTTCAAATCCTGAAAAGA
TATGGGCTGGAATTAGTCAAACTTCTGATAATGAAATATCAAACAATAATTTATCAATTGAAGTTTCGGCTATGCAATTT
GCGTTTCTATTCAATTATCCCAAAGGTAATTTTATATCAGGAGAACTACACGTTCCTGTTGATCAAAAAGTATCGATGAA
AATGGAATCTAAAGATGTCATTCATGCTTTCTGGGTGCCTGAGTTCAGAATTAAACAGGATATTATTCCTGGTCAACCAA
CTATTCTAAATTTCACTCCTACAAAAGTAGGGAAATATCCGATAATTTGCGCAGAATTATGTGGCCCATATCATGGAGGA
ATGAGAGCCTCAATAATTGTTGAAGAAGAATCTGATTACAACGATTGGTTTAACAAAAATAAAAAAACAGAGGTAAATTT
ATGA

Upstream 100 bases:

>100_bases
CTTAAGAAGTTGTAAATTTAAATGATTTTCTTTTAACAAAGGATGCAGAATTTAAAAAATTGAATATCTTTAAAATATAA
ATACAAAATTTAGACATCAA

Downstream 100 bases:

>100_bases
CAATATCAATTGATCCACAAAAAACTAATAATGAAAGTCTTCAACCTAAAGGCTGGCTTAGATACTTTAGCTTTAGTCTT
GATCATAAAGTAATTGGAAT

Product: putative cytochrome c oxidase, subunit 2

Products: NA

Alternate protein names: Cytochrome aa3 subunit 2; Cytochrome c oxidase polypeptide II; Oxidase aa(3) subunit 2 [H]

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MLNKNIYLILIISLVFAISFWIGFNVNLLPIEASINAPIYDELFKILFIIGLIIFIGMTIAVIYSLFKFRKRNDQIGDGI
ALEGNLSLEILWTIIPSIIVLLIGLYSYNIYDRMGGMKELNHNHEMMRSNPEKIWAGISQTSDNEISNNNLSIEVSAMQF
AFLFNYPKGNFISGELHVPVDQKVSMKMESKDVIHAFWVPEFRIKQDIIPGQPTILNFTPTKVGKYPIICAELCGPYHGG
MRASIIVEEESDYNDWFNKNKKTEVNL

Sequences:

>Translated_267_residues
MLNKNIYLILIISLVFAISFWIGFNVNLLPIEASINAPIYDELFKILFIIGLIIFIGMTIAVIYSLFKFRKRNDQIGDGI
ALEGNLSLEILWTIIPSIIVLLIGLYSYNIYDRMGGMKELNHNHEMMRSNPEKIWAGISQTSDNEISNNNLSIEVSAMQF
AFLFNYPKGNFISGELHVPVDQKVSMKMESKDVIHAFWVPEFRIKQDIIPGQPTILNFTPTKVGKYPIICAELCGPYHGG
MRASIIVEEESDYNDWFNKNKKTEVNL
>Mature_267_residues
MLNKNIYLILIISLVFAISFWIGFNVNLLPIEASINAPIYDELFKILFIIGLIIFIGMTIAVIYSLFKFRKRNDQIGDGI
ALEGNLSLEILWTIIPSIIVLLIGLYSYNIYDRMGGMKELNHNHEMMRSNPEKIWAGISQTSDNEISNNNLSIEVSAMQF
AFLFNYPKGNFISGELHVPVDQKVSMKMESKDVIHAFWVPEFRIKQDIIPGQPTILNFTPTKVGKYPIICAELCGPYHGG
MRASIIVEEESDYNDWFNKNKKTEVNL

Specific function: Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) [H]

COG id: COG1622

COG function: function code C; Heme/copper-type cytochrome/quinol oxidases, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase subunit 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001505
- InterPro:   IPR008972
- InterPro:   IPR014222
- InterPro:   IPR015964
- InterPro:   IPR002429
- InterPro:   IPR011759 [H]

Pfam domain/function: PF00116 COX2; PF02790 COX2_TM [H]

EC number: =1.9.3.1 [H]

Molecular weight: Translated: 30476; Mature: 30476

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: PS00078 COX2 ; PS50999 COX2_TM ; PS50857 COX2_CUA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNKNIYLILIISLVFAISFWIGFNVNLLPIEASINAPIYDELFKILFIIGLIIFIGMTI
CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
AVIYSLFKFRKRNDQIGDGIALEGNLSLEILWTIIPSIIVLLIGLYSYNIYDRMGGMKEL
HHHHHHHHHHHCCCCCCCCEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
NHNHEMMRSNPEKIWAGISQTSDNEISNNNLSIEVSAMQFAFLFNYPKGNFISGELHVPV
CCCHHHHHCCHHHHHCCCCCCCCCCCCCCCEEEEEEHEEEEEEEECCCCCEECCEEECCC
DQKVSMKMESKDVIHAFWVPEFRIKQDIIPGQPTILNFTPTKVGKYPIICAELCGPYHGG
CCCCEEEECCCCEEEEEECCCHHHHHCCCCCCCEEEEECCCCCCCCCEEHHHHCCCCCCC
MRASIIVEEESDYNDWFNKNKKTEVNL
CEEEEEEECCCCCHHHHCCCCCEECCC
>Mature Secondary Structure
MLNKNIYLILIISLVFAISFWIGFNVNLLPIEASINAPIYDELFKILFIIGLIIFIGMTI
CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
AVIYSLFKFRKRNDQIGDGIALEGNLSLEILWTIIPSIIVLLIGLYSYNIYDRMGGMKEL
HHHHHHHHHHHCCCCCCCCEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
NHNHEMMRSNPEKIWAGISQTSDNEISNNNLSIEVSAMQFAFLFNYPKGNFISGELHVPV
CCCHHHHHCCHHHHHCCCCCCCCCCCCCCCEEEEEEHEEEEEEEECCCCCEECCEEECCC
DQKVSMKMESKDVIHAFWVPEFRIKQDIIPGQPTILNFTPTKVGKYPIICAELCGPYHGG
CCCCEEEECCCCEEEEEECCCHHHHHCCCCCCCEEEEECCCCCCCCCEEHHHHCCCCCCC
MRASIIVEEESDYNDWFNKNKKTEVNL
CEEEEEEECCCCCHHHHCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1659815; 8399373 [H]