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The map label for this gene is rci [H]

Identifier: 78778767

GI number: 78778767

Start: 364398

End: 365012

Strand: Reverse

Name: rci [H]

Synonym: PMT9312_0382

Alternate gene names: 78778767

Gene position: 365012-364398 (Counterclockwise)

Preceding gene: 78778778

Following gene: 78778766

Centisome position: 21.36

GC content: 43.41

Gene sequence:

>615_bases
GTGATGCGGGAACTGAGGATATTGAGAGTACTGATCGACTGGGCAAGAGATGAAAGAGGAGCGGAAATAAAAGACAACCC
CGCAAGGCAACTGAGAGTGAGAGGGACAGGAGATGCAAGAGCTCCTTTTTTAACGAATGAAGATGAAAAAAGACTCCTGT
TTGAACTGTCTCAGATGTCCAACCCAAATCATCTGAGACTCACAAAGCTTGCACTGGCAACTGGCTTTCGCCGCTCCGAA
CTTTTGAGCCTGACCTGGAGAAATATAGATCTGAAGAAAAAATTACTCTATATATGTAGAAAGAATTGTGCCGCAATAGA
TAATTCATCCGGAATGAGGCTTGTTCCTTTCCCTGAAAAGGCGCAGAAGATTCTTGAGGAGTCAAATGAGAGAAATGGGA
AGGTCATAGAACTATCAAAAGGCGTTGCGAGAAATGGATTTGATAAAGCAAGAAAAAGGGCCGGGCTTCAAACTCTCAGA
TTTCATGACTTAAGGCATATTGCCATAAGCAGAATGTGGAGTAGTGGAATGAATGCCCTGGAGATAAGTGCATGCAGCGG
CCACAGAGATATAAAAATGCTGATGCGCTACAGCCATTTTCAACTTTCCATATAG

Upstream 100 bases:

>100_bases
AGCGGAAAGCTGGCTGGGAGATCTTCCACTATGTGCTCTGCAGATAAGACATTTTGCAGTCTGGAGAGACGAAAGATTAC
TGAAGGTGAAACCAAATACA

Downstream 100 bases:

>100_bases
ATCAGCAGTCCCTCATAAGGGGGGTATTGCAAGTGATGGAGCGTATAAAACTTGTAAAGAAATTTATGATTAATTTTTCG
AATTTGGCTTCTAAATGTTG

Product: putative site-specific integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MMRELRILRVLIDWARDERGAEIKDNPARQLRVRGTGDARAPFLTNEDEKRLLFELSQMSNPNHLRLTKLALATGFRRSE
LLSLTWRNIDLKKKLLYICRKNCAAIDNSSGMRLVPFPEKAQKILEESNERNGKVIELSKGVARNGFDKARKRAGLQTLR
FHDLRHIAISRMWSSGMNALEISACSGHRDIKMLMRYSHFQLSI

Sequences:

>Translated_204_residues
MMRELRILRVLIDWARDERGAEIKDNPARQLRVRGTGDARAPFLTNEDEKRLLFELSQMSNPNHLRLTKLALATGFRRSE
LLSLTWRNIDLKKKLLYICRKNCAAIDNSSGMRLVPFPEKAQKILEESNERNGKVIELSKGVARNGFDKARKRAGLQTLR
FHDLRHIAISRMWSSGMNALEISACSGHRDIKMLMRYSHFQLSI
>Mature_204_residues
MMRELRILRVLIDWARDERGAEIKDNPARQLRVRGTGDARAPFLTNEDEKRLLFELSQMSNPNHLRLTKLALATGFRRSE
LLSLTWRNIDLKKKLLYICRKNCAAIDNSSGMRLVPFPEKAQKILEESNERNGKVIELSKGVARNGFDKARKRAGLQTLR
FHDLRHIAISRMWSSGMNALEISACSGHRDIKMLMRYSHFQLSI

Specific function: Shufflon-specific DNA recombinase [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 23588; Mature: 23588

Theoretical pI: Translated: 11.09; Mature: 11.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRELRILRVLIDWARDERGAEIKDNPARQLRVRGTGDARAPFLTNEDEKRLLFELSQMS
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCC
NPNHLRLTKLALATGFRRSELLSLTWRNIDLKKKLLYICRKNCAAIDNSSGMRLVPFPEK
CCCCEEHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCHH
AQKILEESNERNGKVIELSKGVARNGFDKARKRAGLQTLRFHDLRHIAISRMWSSGMNAL
HHHHHHHCCCCCCCEEEECCCCHHCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCEE
EISACSGHRDIKMLMRYSHFQLSI
EEEECCCCHHHHHHHHHHCCEECC
>Mature Secondary Structure
MMRELRILRVLIDWARDERGAEIKDNPARQLRVRGTGDARAPFLTNEDEKRLLFELSQMS
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCC
NPNHLRLTKLALATGFRRSELLSLTWRNIDLKKKLLYICRKNCAAIDNSSGMRLVPFPEK
CCCCEEHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCHH
AQKILEESNERNGKVIELSKGVARNGFDKARKRAGLQTLRFHDLRHIAISRMWSSGMNAL
HHHHHHHCCCCCCCEEEECCCCHHCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCEE
EISACSGHRDIKMLMRYSHFQLSI
EEEECCCCHHHHHHHHHHCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3065610; 3029698 [H]