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The map label for this gene is ndhA [H]

Identifier: 78778548

GI number: 78778548

Start: 155685

End: 156803

Strand: Reverse

Name: ndhA [H]

Synonym: PMT9312_0162

Alternate gene names: 78778548

Gene position: 156803-155685 (Counterclockwise)

Preceding gene: 78778549

Following gene: 78778547

Centisome position: 9.17

GC content: 35.84

Gene sequence:

>1119_bases
TTGGAATACGGATTAGATCTTGAATATAGTTTTAATGAATTCTTCAAAGGTTTTGGCCTTTCTAGTGAAATCGCTCATAT
AATTTGGCTCCCTATACCTATGCTTTTGGTTTTAGTAGCGGCAGTTGTTGGAGTTTTAGTAACAGTTTGGCTTGAAAGAA
AAATATCTGCTGCTGCTCAACAAAGAATAGGTCCCGAATATGCAGGAGCATTAGGCGTACTCCAACCAATTGCGGATGGT
CTTAAATTACTTGTCAAAGAGGATATAATCCCTGCTAAAGCAGATGGAATTCTCTTCACCGCTGGACCTATATTAGTTCT
TGTTCCAGTTATTCTTTCTTGGCTAATTGTACCTTTTGGACAAAACCTGTTAATAAGTAACGTTGGCATTGGAATTTTCC
TATGGATTGCTTTAAGCAGTATCCAACCAATTGGACTCCTTATGAGCGGTTACGCATCAAATAATAAATATTCATTATTA
GGCGGATTAAGAGCTGCTGCTCAATCTATAAGTTACGAAATACCTTTAGCTTTATCTGTACTAGCTATCGTACTAATGAC
AAATTCTCTAAGTACTATTGACATTGTTAACCAACAAAGTGGTGCTGGAATCCTAAGTTGGAATATTTGGAGACAACCCG
TTGGTTTTATAGTCTTTTGGATTTGTGCTCTTGCAGAATGCGAAAGACTTCCATTTGACTTACCTGAAGCTGAAGAAGAA
TTAGTTGCAGGATATCAAACTGAATATGCAGGTATGAAATTCGCTTTGTTCTACCTTGGTAGTTACATTAATCTAATACT
TTCAGCATTATTGGTATCAATACTTTATTTAGGAGGATGGGGTTTTCCTATCCCAGTTGAATTAATAGCTAAATTTCTTC
ATTTGCCCATTAATGCACCCGTCATACAAGTTTTCACTGCATCAATAGGAATTGTAATGACTGTATTGAAAGCGTATCTT
TTAGTTTTCATCGCAATATTATTACGTTGGACAACTCCTAGAGTAAGAATAGATCAACTTTTAGATCTAGGATGGAAGTT
TCTTCTTCCAATTTCTCTTGCTAATCTTTTGATAACTGCAGGATTAAAACTTGCTTTTCCTCAATTCTTTGGTGGTTAA

Upstream 100 bases:

>100_bases
GATAAGCTTAGAAAATAGAGATTAATATTTGCAGCTTTTCATAAAAAACACACATATTGTTGGTGACGAGTTAATGTATT
AAGTAAATAACATTAAAATT

Downstream 100 bases:

>100_bases
ATTTAAGTAAAAATACTTAAATTTAAAATTAATCCACTAAAATACAAAAACAAAGTAAATTCTTCAAAATGAAAAATTTC
CTTCAACAAATAAATAGCTA

Product: NADH dehydrogenase subunit H

Products: NAD+; ubiquinol

Alternate protein names: NAD(P)H dehydrogenase I subunit 1; NDH-1 subunit 1; NDH-A [H]

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MEYGLDLEYSFNEFFKGFGLSSEIAHIIWLPIPMLLVLVAAVVGVLVTVWLERKISAAAQQRIGPEYAGALGVLQPIADG
LKLLVKEDIIPAKADGILFTAGPILVLVPVILSWLIVPFGQNLLISNVGIGIFLWIALSSIQPIGLLMSGYASNNKYSLL
GGLRAAAQSISYEIPLALSVLAIVLMTNSLSTIDIVNQQSGAGILSWNIWRQPVGFIVFWICALAECERLPFDLPEAEEE
LVAGYQTEYAGMKFALFYLGSYINLILSALLVSILYLGGWGFPIPVELIAKFLHLPINAPVIQVFTASIGIVMTVLKAYL
LVFIAILLRWTTPRVRIDQLLDLGWKFLLPISLANLLITAGLKLAFPQFFGG

Sequences:

>Translated_372_residues
MEYGLDLEYSFNEFFKGFGLSSEIAHIIWLPIPMLLVLVAAVVGVLVTVWLERKISAAAQQRIGPEYAGALGVLQPIADG
LKLLVKEDIIPAKADGILFTAGPILVLVPVILSWLIVPFGQNLLISNVGIGIFLWIALSSIQPIGLLMSGYASNNKYSLL
GGLRAAAQSISYEIPLALSVLAIVLMTNSLSTIDIVNQQSGAGILSWNIWRQPVGFIVFWICALAECERLPFDLPEAEEE
LVAGYQTEYAGMKFALFYLGSYINLILSALLVSILYLGGWGFPIPVELIAKFLHLPINAPVIQVFTASIGIVMTVLKAYL
LVFIAILLRWTTPRVRIDQLLDLGWKFLLPISLANLLITAGLKLAFPQFFGG
>Mature_372_residues
MEYGLDLEYSFNEFFKGFGLSSEIAHIIWLPIPMLLVLVAAVVGVLVTVWLERKISAAAQQRIGPEYAGALGVLQPIADG
LKLLVKEDIIPAKADGILFTAGPILVLVPVILSWLIVPFGQNLLISNVGIGIFLWIALSSIQPIGLLMSGYASNNKYSLL
GGLRAAAQSISYEIPLALSVLAIVLMTNSLSTIDIVNQQSGAGILSWNIWRQPVGFIVFWICALAECERLPFDLPEAEEE
LVAGYQTEYAGMKFALFYLGSYINLILSALLVSILYLGGWGFPIPVELIAKFLHLPINAPVIQVFTASIGIVMTVLKAYL
LVFIAILLRWTTPRVRIDQLLDLGWKFLLPISLANLLITAGLKLAFPQFFGG

Specific function: NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone

COG id: COG1005

COG function: function code C; NADH:ubiquinone oxidoreductase subunit 1 (chain H)

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the complex I subunit 1 family [H]

Homologues:

Organism=Homo sapiens, GI251831107, Length=306, Percent_Identity=35.6209150326797, Blast_Score=168, Evalue=7e-42,
Organism=Escherichia coli, GI1788618, Length=340, Percent_Identity=38.5294117647059, Blast_Score=225, Evalue=4e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023020
- InterPro:   IPR001694
- InterPro:   IPR018086 [H]

Pfam domain/function: PF00146 NADHdh [H]

EC number: 1.6.5.3

Molecular weight: Translated: 40600; Mature: 40600

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS00667 COMPLEX1_ND1_1 ; PS00668 COMPLEX1_ND1_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYGLDLEYSFNEFFKGFGLSSEIAHIIWLPIPMLLVLVAAVVGVLVTVWLERKISAAAQ
CCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QRIGPEYAGALGVLQPIADGLKLLVKEDIIPAKADGILFTAGPILVLVPVILSWLIVPFG
HHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCC
QNLLISNVGIGIFLWIALSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALSV
CCHHHHHCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHH
LAIVLMTNSLSTIDIVNQQSGAGILSWNIWRQPVGFIVFWICALAECERLPFDLPEAEEE
HHHHHHHCCCCCEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
LVAGYQTEYAGMKFALFYLGSYINLILSALLVSILYLGGWGFPIPVELIAKFLHLPINAP
HHHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCH
VIQVFTASIGIVMTVLKAYLLVFIAILLRWTTPRVRIDQLLDLGWKFLLPISLANLLITA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
GLKLAFPQFFGG
CHHHHCHHHHCC
>Mature Secondary Structure
MEYGLDLEYSFNEFFKGFGLSSEIAHIIWLPIPMLLVLVAAVVGVLVTVWLERKISAAAQ
CCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QRIGPEYAGALGVLQPIADGLKLLVKEDIIPAKADGILFTAGPILVLVPVILSWLIVPFG
HHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCC
QNLLISNVGIGIFLWIALSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALSV
CCHHHHHCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHH
LAIVLMTNSLSTIDIVNQQSGAGILSWNIWRQPVGFIVFWICALAECERLPFDLPEAEEE
HHHHHHHCCCCCEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
LVAGYQTEYAGMKFALFYLGSYINLILSALLVSILYLGGWGFPIPVELIAKFLHLPINAP
HHHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCH
VIQVFTASIGIVMTVLKAYLLVFIAILLRWTTPRVRIDQLLDLGWKFLLPISLANLLITA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
GLKLAFPQFFGG
CHHHHCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA