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The map label for this gene is 78778486

Identifier: 78778486

GI number: 78778486

Start: 101126

End: 102559

Strand: Reverse

Name: 78778486

Synonym: PMT9312_0101

Alternate gene names: NA

Gene position: 102559-101126 (Counterclockwise)

Preceding gene: 78778487

Following gene: 78778485

Centisome position: 6.0

GC content: 27.48

Gene sequence:

>1434_bases
ATGCTTAGAAGAGTAATAAATCCGATCTTATTTTTGCCTCTCGCTCTATGTATAAATTCCATCAATGTACTATCTAGCGA
AACCAAAGATTATATTGATAGTGTTTTAGAAGAAAAACCAAACAAGCCTTTTATTAGTTATCAAGAAATAGAAGAAATTG
TCTTAAATAATCAAGAGTTAAGATCATTAAAAAATCTAGTTACCTCTGCAAGCTTTAATCTTTCCAGTCAAATTGCTCAA
AGATATCCATCCTTAGATTTTCAAGCAAATGGATTGCCAAAATATGTCGCAGGCAAAAAACACAGTAGCAATTCAACGAC
TTTAAAAACATCACAATATAGTGCTAATCCCTCTCTAAATATCAAATGGAATTTAATTGATCCCCTTAGAGGACCGGAAA
TCAAAATTGCGAAAGAAAATTACAAAATTGCAGAAAATAATTATGAGATTAAGAAAAAAGATTTAATTCAAGAAGCAAGG
ATAAGGTACCACAAATACCAAAAGTCATATCAAGATATTCAAAATAAAAAATTTACACTTAATTTATCAAATACAAGTTT
AGATAACGCTTTAGCAAAGTTAGATGCTGGAATTGGTACAAAATTTGAAGTTCTTGAAGCAGAAGCTCAATTATCTCGAG
ATAAACAATCTCTTAATGAAAAGAAAATAGAACATGAAATTAATACAATTTCTCTCAAAGAGATTCTTAACATAAATGGG
GATTTTGAAACTAATAAAGAGCAAAATCTAATAGGTTTCTGGAATCATAGATTAAATAAAAATATTAATGAAGGTTTAGA
TCAAAATCTTTCTTTGAAAAACATCCTTCTTCAACAATCTATTAAAAAGAGTCAAGCACAAAGTTTTTTATCTCAAAATA
AGCCAAAAATTTATATCAGCAACACTTTAGCAAGTACTTTTTCAAAGGGGGACTCTCTTTCCAGTAATATTGACTCTGAA
AAATCTGGATCTAACTATACAAATACAATAAGTTTAAATTTTGCATGGAATATTTTTAATGGCGGACAGAATAAGAACTC
TTACAAATCAAAAATAGCAGATGCAGAATCTGAGGAATATACTTATAAAAATCTAAAAAATGTTTTGACCACAAATATTA
GTAAAGCCTATTTGAATCTCAAATTAAATGAACAGAAAATAATTTCTTCTCTTAAAGAAATTGAATCTAGTAAAGAGTCT
GTAAGACTTTCTAGACTTAGATATGATGTTGGCATATCAACTCTCAAAGATGTACTTGTAAGGCAAAATGAATTAAGTAA
TGCAAAAGCAAAAAATATTAATGCTCTATATAATTACAATTTGAATTTAGATGAATTAGAAAGATTAACTTTTCTTGAAA
TAAGTAAAAGTTGTTTGGATAACAATAATAATAAAATTAAAGATAGCGAATCTATTTGCAATATTTCAAGATGA

Upstream 100 bases:

>100_bases
GTGGAAAATCAATTAAAGACCAAAATTCACGTTCTTGATGATTCAAATGATATTATTAATACTTTGGTTGGTCAATCGAA
TAACACTGATACTATAAAAC

Downstream 100 bases:

>100_bases
ATCCAACAACTTTAACTAATAAGCAACTAAGTGAATTAGATTCTCTATTTGAAATAGTTAGTCAACGTCAAATAAAAGAT
TTTGGAAATATTAGTGCCAG

Product: RND family outer membrane efflux protein-like

Products: NA

Alternate protein names: RND Family Outer Membrane Efflux Protein; Outer Membrane Protein-Like; RND Family Outer Membrane Efflux Protein-Like; Tranporter Outer Membrane Factor Family; Outer Membrane Efflux Family Protein

Number of amino acids: Translated: 477; Mature: 477

Protein sequence:

>477_residues
MLRRVINPILFLPLALCINSINVLSSETKDYIDSVLEEKPNKPFISYQEIEEIVLNNQELRSLKNLVTSASFNLSSQIAQ
RYPSLDFQANGLPKYVAGKKHSSNSTTLKTSQYSANPSLNIKWNLIDPLRGPEIKIAKENYKIAENNYEIKKKDLIQEAR
IRYHKYQKSYQDIQNKKFTLNLSNTSLDNALAKLDAGIGTKFEVLEAEAQLSRDKQSLNEKKIEHEINTISLKEILNING
DFETNKEQNLIGFWNHRLNKNINEGLDQNLSLKNILLQQSIKKSQAQSFLSQNKPKIYISNTLASTFSKGDSLSSNIDSE
KSGSNYTNTISLNFAWNIFNGGQNKNSYKSKIADAESEEYTYKNLKNVLTTNISKAYLNLKLNEQKIISSLKEIESSKES
VRLSRLRYDVGISTLKDVLVRQNELSNAKAKNINALYNYNLNLDELERLTFLEISKSCLDNNNNKIKDSESICNISR

Sequences:

>Translated_477_residues
MLRRVINPILFLPLALCINSINVLSSETKDYIDSVLEEKPNKPFISYQEIEEIVLNNQELRSLKNLVTSASFNLSSQIAQ
RYPSLDFQANGLPKYVAGKKHSSNSTTLKTSQYSANPSLNIKWNLIDPLRGPEIKIAKENYKIAENNYEIKKKDLIQEAR
IRYHKYQKSYQDIQNKKFTLNLSNTSLDNALAKLDAGIGTKFEVLEAEAQLSRDKQSLNEKKIEHEINTISLKEILNING
DFETNKEQNLIGFWNHRLNKNINEGLDQNLSLKNILLQQSIKKSQAQSFLSQNKPKIYISNTLASTFSKGDSLSSNIDSE
KSGSNYTNTISLNFAWNIFNGGQNKNSYKSKIADAESEEYTYKNLKNVLTTNISKAYLNLKLNEQKIISSLKEIESSKES
VRLSRLRYDVGISTLKDVLVRQNELSNAKAKNINALYNYNLNLDELERLTFLEISKSCLDNNNNKIKDSESICNISR
>Mature_477_residues
MLRRVINPILFLPLALCINSINVLSSETKDYIDSVLEEKPNKPFISYQEIEEIVLNNQELRSLKNLVTSASFNLSSQIAQ
RYPSLDFQANGLPKYVAGKKHSSNSTTLKTSQYSANPSLNIKWNLIDPLRGPEIKIAKENYKIAENNYEIKKKDLIQEAR
IRYHKYQKSYQDIQNKKFTLNLSNTSLDNALAKLDAGIGTKFEVLEAEAQLSRDKQSLNEKKIEHEINTISLKEILNING
DFETNKEQNLIGFWNHRLNKNINEGLDQNLSLKNILLQQSIKKSQAQSFLSQNKPKIYISNTLASTFSKGDSLSSNIDSE
KSGSNYTNTISLNFAWNIFNGGQNKNSYKSKIADAESEEYTYKNLKNVLTTNISKAYLNLKLNEQKIISSLKEIESSKES
VRLSRLRYDVGISTLKDVLVRQNELSNAKAKNINALYNYNLNLDELERLTFLEISKSCLDNNNNKIKDSESICNISR

Specific function: Unknown

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54378; Mature: 54378

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRRVINPILFLPLALCINSINVLSSETKDYIDSVLEEKPNKPFISYQEIEEIVLNNQEL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHH
RSLKNLVTSASFNLSSQIAQRYPSLDFQANGLPKYVAGKKHSSNSTTLKTSQYSANPSLN
HHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCEEEECCCCCCCCEE
IKWNLIDPLRGPEIKIAKENYKIAENNYEIKKKDLIQEARIRYHKYQKSYQDIQNKKFTL
EEEEEECCCCCCCEEEECCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
NLSNTSLDNALAKLDAGIGTKFEVLEAEAQLSRDKQSLNEKKIEHEINTISLKEILNING
EECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHCCCC
DFETNKEQNLIGFWNHRLNKNINEGLDQNLSLKNILLQQSIKKSQAQSFLSQNKPKIYIS
CCCCCCCCCEEHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
NTLASTFSKGDSLSSNIDSEKSGSNYTNTISLNFAWNIFNGGQNKNSYKSKIADAESEEY
HHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHCCCCCHHH
TYKNLKNVLTTNISKAYLNLKLNEQKIISSLKEIESSKESVRLSRLRYDVGISTLKDVLV
HHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
RQNELSNAKAKNINALYNYNLNLDELERLTFLEISKSCLDNNNNKIKDSESICNISR
HHHHHCCCHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCC
>Mature Secondary Structure
MLRRVINPILFLPLALCINSINVLSSETKDYIDSVLEEKPNKPFISYQEIEEIVLNNQEL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHH
RSLKNLVTSASFNLSSQIAQRYPSLDFQANGLPKYVAGKKHSSNSTTLKTSQYSANPSLN
HHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCEEEECCCCCCCCEE
IKWNLIDPLRGPEIKIAKENYKIAENNYEIKKKDLIQEARIRYHKYQKSYQDIQNKKFTL
EEEEEECCCCCCCEEEECCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
NLSNTSLDNALAKLDAGIGTKFEVLEAEAQLSRDKQSLNEKKIEHEINTISLKEILNING
EECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHCCCC
DFETNKEQNLIGFWNHRLNKNINEGLDQNLSLKNILLQQSIKKSQAQSFLSQNKPKIYIS
CCCCCCCCCEEHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
NTLASTFSKGDSLSSNIDSEKSGSNYTNTISLNFAWNIFNGGQNKNSYKSKIADAESEEY
HHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHCCCCCHHH
TYKNLKNVLTTNISKAYLNLKLNEQKIISSLKEIESSKESVRLSRLRYDVGISTLKDVLV
HHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
RQNELSNAKAKNINALYNYNLNLDELERLTFLEISKSCLDNNNNKIKDSESICNISR
HHHHHCCCHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA