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The map label for this gene is ydiF [H]

Identifier: 78778478

GI number: 78778478

Start: 94907

End: 96517

Strand: Direct

Name: ydiF [H]

Synonym: PMT9312_0093

Alternate gene names: 78778478

Gene position: 94907-96517 (Clockwise)

Preceding gene: 78778476

Following gene: 78778480

Centisome position: 5.55

GC content: 28.12

Gene sequence:

>1611_bases
GTGATTAGATTTGAAGGTGTAAGCAAAATTTATTCTACAGATATTGTTTTAAAAAATATTAATTGGGAGATTAAGAAAGG
AGAAAAAGTTGGTTTAGTTGGTTCCAATGGTGCAGGTAAATCAACCCAATTTAAGATTTTAATTGGAGAGGAAGATCAAA
CAAGTGGAACGATCATCAAAGAGGGAAATCCTAAAATTGCACATTTAAAACAGGAGTTAGATTGTAACTTGAATTGTTCA
GTGAGAGAGGAATTAGAAAGTTCTTTCAAAGATATACAAATTGTTGCCATTAAACTTTTAGAAATTGAGAATAAAATGAA
ATCATTAGATTTCAAAAAGAATTCCGATGAACTGGAAACATTAGTCAATCAACTCGCAAAATATCAAGCAAAATTTGAAG
TCTTAGGTGGCTATAAAATGCAATCTGATGTAGACAAAATATTACCAAAACTAGGCTTTTCTATCGAAGATGCTGATAAA
TTAGTTGGTAATTTTTCAGGTGGTTGGCAGATGAAAGTTGCACTAGGAAAAATAATTTTACAAAAACCTGATTTACTTTT
ACTTGATGAACCAACAAATCATTTAGATTTAGATACTATTTTCTGGCTGGAAGAATATTTATCTTCGCTTAAGATTGCAA
TTATTATTATTAGCCATGATAGGTTTTTTTTAGACAAATTATGTAAAAAAATAATTTTTATAGATAGAGGAATAGCTGAA
ATATATAATGGTAACTATTCTTTTTTTGTGGAACAGAAATCTTTAAATGAAGAATCACAAAATAAAGCATATCAATTACA
ACAAAAAGAAATTGAGATGCAGAAGAAGTATATAGATAGATTTAGAGCTAGTGCAACTAGAAGTTCTCAAGCAAAGAGTA
GAGAAAAACAATTAAAAAAGATTTCTAAAATTGAAGCGCCCATAGCAAAAGCAAAAAGTCCTGCTTTTAATTTTCCAGAG
TGTCCTCGCTCAGGAAAATTAGTGCTAAATATCAAAAATTTATCTCATAGTTATGAAGACAAAATTCTTTTTTTAGATGT
TAATTTAAAGATTTCTTCGGGGGATAAAATAGCAATATTAGGACCTAATGGCTCCGGTAAATCTACATTGCTGAAAATTA
TTATGGAAAAAATATCCCCTGAAATTGGAGAAATTAATCTTGGTAAACATAATATAATTACTAGCTATTATGAACAGAAT
CAGGCTGAAGCTCTTTCACTTGAGGAAAGAGTTATTGATTTAATATGTAATAAATCTCCAGAATGGTCTCAAAAAAAAGT
AAGAACATTTTTAGGAGGTTTTGGTTTCCAAAAAGAAACTGTTTTTAAATATATTAAACAACTTAGTGGAGGAGAAAAGG
CAAGATTAGCATTGGCTCTTATGATCATGAATCCAAGTAATTTTCTTTTATTAGATGAGCCAACTAATCATTTGGATTTG
CAATCTAAAGAAAATTTAGAATTAGCAATTAATAATTATAAAGGTTCATTATTAATAATTTCTCATGATCGATATTTTAT
TTCAAAGGTTGCAAATAGAATTGTAGAAATTAAAGATTCAAAGTTATTTTCATATGATGGTAATTACGAATATTTTTTAG
AAAAAAAATGA

Upstream 100 bases:

>100_bases
TTACTACAATTTGTTCTATTCGTTTCATGATCCAATTTTATTCCACAAAATATTTTTTAGTAAATAAGCCTCAGAATTTG
TAAATTCTATTTTTAAAACA

Downstream 100 bases:

>100_bases
AAATCACAAAAGATTAGTAATTAATAAATATTTATTTTTGCAGAAAGTTTGAATACTTTTAAAAAAGTTTACATTTAGCT
AGGCAAGATCACTCATTTAT

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 536; Mature: 536

Protein sequence:

>536_residues
MIRFEGVSKIYSTDIVLKNINWEIKKGEKVGLVGSNGAGKSTQFKILIGEEDQTSGTIIKEGNPKIAHLKQELDCNLNCS
VREELESSFKDIQIVAIKLLEIENKMKSLDFKKNSDELETLVNQLAKYQAKFEVLGGYKMQSDVDKILPKLGFSIEDADK
LVGNFSGGWQMKVALGKIILQKPDLLLLDEPTNHLDLDTIFWLEEYLSSLKIAIIIISHDRFFLDKLCKKIIFIDRGIAE
IYNGNYSFFVEQKSLNEESQNKAYQLQQKEIEMQKKYIDRFRASATRSSQAKSREKQLKKISKIEAPIAKAKSPAFNFPE
CPRSGKLVLNIKNLSHSYEDKILFLDVNLKISSGDKIAILGPNGSGKSTLLKIIMEKISPEIGEINLGKHNIITSYYEQN
QAEALSLEERVIDLICNKSPEWSQKKVRTFLGGFGFQKETVFKYIKQLSGGEKARLALALMIMNPSNFLLLDEPTNHLDL
QSKENLELAINNYKGSLLIISHDRYFISKVANRIVEIKDSKLFSYDGNYEYFLEKK

Sequences:

>Translated_536_residues
MIRFEGVSKIYSTDIVLKNINWEIKKGEKVGLVGSNGAGKSTQFKILIGEEDQTSGTIIKEGNPKIAHLKQELDCNLNCS
VREELESSFKDIQIVAIKLLEIENKMKSLDFKKNSDELETLVNQLAKYQAKFEVLGGYKMQSDVDKILPKLGFSIEDADK
LVGNFSGGWQMKVALGKIILQKPDLLLLDEPTNHLDLDTIFWLEEYLSSLKIAIIIISHDRFFLDKLCKKIIFIDRGIAE
IYNGNYSFFVEQKSLNEESQNKAYQLQQKEIEMQKKYIDRFRASATRSSQAKSREKQLKKISKIEAPIAKAKSPAFNFPE
CPRSGKLVLNIKNLSHSYEDKILFLDVNLKISSGDKIAILGPNGSGKSTLLKIIMEKISPEIGEINLGKHNIITSYYEQN
QAEALSLEERVIDLICNKSPEWSQKKVRTFLGGFGFQKETVFKYIKQLSGGEKARLALALMIMNPSNFLLLDEPTNHLDL
QSKENLELAINNYKGSLLIISHDRYFISKVANRIVEIKDSKLFSYDGNYEYFLEKK
>Mature_536_residues
MIRFEGVSKIYSTDIVLKNINWEIKKGEKVGLVGSNGAGKSTQFKILIGEEDQTSGTIIKEGNPKIAHLKQELDCNLNCS
VREELESSFKDIQIVAIKLLEIENKMKSLDFKKNSDELETLVNQLAKYQAKFEVLGGYKMQSDVDKILPKLGFSIEDADK
LVGNFSGGWQMKVALGKIILQKPDLLLLDEPTNHLDLDTIFWLEEYLSSLKIAIIIISHDRFFLDKLCKKIIFIDRGIAE
IYNGNYSFFVEQKSLNEESQNKAYQLQQKEIEMQKKYIDRFRASATRSSQAKSREKQLKKISKIEAPIAKAKSPAFNFPE
CPRSGKLVLNIKNLSHSYEDKILFLDVNLKISSGDKIAILGPNGSGKSTLLKIIMEKISPEIGEINLGKHNIITSYYEQN
QAEALSLEERVIDLICNKSPEWSQKKVRTFLGGFGFQKETVFKYIKQLSGGEKARLALALMIMNPSNFLLLDEPTNHLDL
QSKENLELAINNYKGSLLIISHDRYFISKVANRIVEIKDSKLFSYDGNYEYFLEKK

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=533, Percent_Identity=30.7692307692308, Blast_Score=276, Evalue=3e-74,
Organism=Homo sapiens, GI27881506, Length=525, Percent_Identity=31.4285714285714, Blast_Score=246, Evalue=5e-65,
Organism=Homo sapiens, GI10947137, Length=525, Percent_Identity=31.4285714285714, Blast_Score=245, Evalue=6e-65,
Organism=Homo sapiens, GI69354671, Length=536, Percent_Identity=30.9701492537313, Blast_Score=214, Evalue=2e-55,
Organism=Homo sapiens, GI10947135, Length=536, Percent_Identity=30.9701492537313, Blast_Score=214, Evalue=2e-55,
Organism=Escherichia coli, GI1789751, Length=536, Percent_Identity=36.0074626865672, Blast_Score=337, Evalue=1e-93,
Organism=Escherichia coli, GI1787041, Length=548, Percent_Identity=30.8394160583942, Blast_Score=292, Evalue=5e-80,
Organism=Escherichia coli, GI2367384, Length=534, Percent_Identity=32.3970037453184, Blast_Score=280, Evalue=2e-76,
Organism=Escherichia coli, GI1787182, Length=547, Percent_Identity=32.9067641681901, Blast_Score=264, Evalue=8e-72,
Organism=Escherichia coli, GI1790190, Length=554, Percent_Identity=22.3826714801444, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787029, Length=260, Percent_Identity=30, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1788506, Length=233, Percent_Identity=28.755364806867, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1788225, Length=231, Percent_Identity=25.974025974026, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1789891, Length=229, Percent_Identity=26.6375545851528, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1786703, Length=226, Percent_Identity=26.9911504424779, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1788472, Length=226, Percent_Identity=26.1061946902655, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787089, Length=257, Percent_Identity=25.2918287937743, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI87081791, Length=203, Percent_Identity=29.5566502463054, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787712, Length=226, Percent_Identity=25.6637168141593, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1786253, Length=211, Percent_Identity=26.0663507109005, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787112, Length=251, Percent_Identity=25.8964143426295, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789672, Length=233, Percent_Identity=22.3175965665236, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1786698, Length=220, Percent_Identity=28.1818181818182, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI48994883, Length=242, Percent_Identity=25.2066115702479, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1787164, Length=203, Percent_Identity=25.615763546798, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1790525, Length=540, Percent_Identity=20, Blast_Score=63, Evalue=5e-11,
Organism=Escherichia coli, GI1789962, Length=227, Percent_Identity=22.9074889867841, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=538, Percent_Identity=32.3420074349442, Blast_Score=266, Evalue=2e-71,
Organism=Caenorhabditis elegans, GI17559834, Length=530, Percent_Identity=30.377358490566, Blast_Score=248, Evalue=8e-66,
Organism=Caenorhabditis elegans, GI17555318, Length=545, Percent_Identity=31.0091743119266, Blast_Score=246, Evalue=3e-65,
Organism=Caenorhabditis elegans, GI115533592, Length=231, Percent_Identity=29.4372294372294, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI212646699, Length=231, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI193208177, Length=246, Percent_Identity=27.6422764227642, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6321121, Length=530, Percent_Identity=31.1320754716981, Blast_Score=268, Evalue=2e-72,
Organism=Saccharomyces cerevisiae, GI6320874, Length=538, Percent_Identity=31.5985130111524, Blast_Score=246, Evalue=9e-66,
Organism=Saccharomyces cerevisiae, GI6325030, Length=445, Percent_Identity=28.0898876404494, Blast_Score=145, Evalue=2e-35,
Organism=Saccharomyces cerevisiae, GI6324314, Length=390, Percent_Identity=26.9230769230769, Blast_Score=134, Evalue=3e-32,
Organism=Saccharomyces cerevisiae, GI6323278, Length=394, Percent_Identity=26.1421319796954, Blast_Score=125, Evalue=2e-29,
Organism=Drosophila melanogaster, GI24666836, Length=534, Percent_Identity=33.5205992509363, Blast_Score=286, Evalue=2e-77,
Organism=Drosophila melanogaster, GI24642252, Length=505, Percent_Identity=32.6732673267327, Blast_Score=259, Evalue=2e-69,
Organism=Drosophila melanogaster, GI18859989, Length=505, Percent_Identity=32.6732673267327, Blast_Score=259, Evalue=2e-69,
Organism=Drosophila melanogaster, GI24641342, Length=527, Percent_Identity=31.8785578747628, Blast_Score=258, Evalue=9e-69,
Organism=Drosophila melanogaster, GI24659289, Length=205, Percent_Identity=29.2682926829268, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI17136662, Length=207, Percent_Identity=27.536231884058, Blast_Score=67, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 60982; Mature: 60982

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRFEGVSKIYSTDIVLKNINWEIKKGEKVGLVGSNGAGKSTQFKILIGEEDQTSGTIIK
CEEECCCHHHHCCEEEEEECCEEEECCCEEEEEECCCCCCCEEEEEEECCCCCCCCCEEE
EGNPKIAHLKQELDCNLNCSVREELESSFKDIQIVAIKLLEIENKMKSLDFKKNSDELET
CCCCCHHHHHHHCCCCCCCCHHHHHHHHHCCEEEEEEHHHHHHHHHHHCCCCCCHHHHHH
LVNQLAKYQAKFEVLGGYKMQSDVDKILPKLGFSIEDADKLVGNFSGGWQMKVALGKIIL
HHHHHHHHHHHHHEECCEECHHHHHHHHHHHCCCCCCHHHHHHCCCCCEEEEEEHHHHHH
QKPDLLLLDEPTNHLDLDTIFWLEEYLSSLKIAIIIISHDRFFLDKLCKKIIFIDRGIAE
CCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHCCCHHH
IYNGNYSFFVEQKSLNEESQNKAYQLQQKEIEMQKKYIDRFRASATRSSQAKSREKQLKK
HHCCCEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
ISKIEAPIAKAKSPAFNFPECPRSGKLVLNIKNLSHSYEDKILFLDVNLKISSGDKIAIL
HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEECCCCEEEEE
GPNGSGKSTLLKIIMEKISPEIGEINLGKHNIITSYYEQNQAEALSLEERVIDLICNKSP
CCCCCCHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
EWSQKKVRTFLGGFGFQKETVFKYIKQLSGGEKARLALALMIMNPSNFLLLDEPTNHLDL
CHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEECCCCCCCC
QSKENLELAINNYKGSLLIISHDRYFISKVANRIVEIKDSKLFSYDGNYEYFLEKK
CCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHEEEECCEEEEECCCEEEEEECC
>Mature Secondary Structure
MIRFEGVSKIYSTDIVLKNINWEIKKGEKVGLVGSNGAGKSTQFKILIGEEDQTSGTIIK
CEEECCCHHHHCCEEEEEECCEEEECCCEEEEEECCCCCCCEEEEEEECCCCCCCCCEEE
EGNPKIAHLKQELDCNLNCSVREELESSFKDIQIVAIKLLEIENKMKSLDFKKNSDELET
CCCCCHHHHHHHCCCCCCCCHHHHHHHHHCCEEEEEEHHHHHHHHHHHCCCCCCHHHHHH
LVNQLAKYQAKFEVLGGYKMQSDVDKILPKLGFSIEDADKLVGNFSGGWQMKVALGKIIL
HHHHHHHHHHHHHEECCEECHHHHHHHHHHHCCCCCCHHHHHHCCCCCEEEEEEHHHHHH
QKPDLLLLDEPTNHLDLDTIFWLEEYLSSLKIAIIIISHDRFFLDKLCKKIIFIDRGIAE
CCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHCCCHHH
IYNGNYSFFVEQKSLNEESQNKAYQLQQKEIEMQKKYIDRFRASATRSSQAKSREKQLKK
HHCCCEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
ISKIEAPIAKAKSPAFNFPECPRSGKLVLNIKNLSHSYEDKILFLDVNLKISSGDKIAIL
HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEECCCCEEEEE
GPNGSGKSTLLKIIMEKISPEIGEINLGKHNIITSYYEQNQAEALSLEERVIDLICNKSP
CCCCCCHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
EWSQKKVRTFLGGFGFQKETVFKYIKQLSGGEKARLALALMIMNPSNFLLLDEPTNHLDL
CHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEECCCCCCCC
QSKENLELAINNYKGSLLIISHDRYFISKVANRIVEIKDSKLFSYDGNYEYFLEKK
CCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHEEEECCEEEEECCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]