| Definition | Prochlorococcus marinus str. MIT 9312, complete genome. |
|---|---|
| Accession | NC_007577 |
| Length | 1,709,204 |
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The map label for this gene is speA [H]
Identifier: 78778431
GI number: 78778431
Start: 48703
End: 50649
Strand: Reverse
Name: speA [H]
Synonym: PMT9312_0046
Alternate gene names: 78778431
Gene position: 50649-48703 (Counterclockwise)
Preceding gene: 78778433
Following gene: 78778429
Centisome position: 2.96
GC content: 29.33
Gene sequence:
>1947_bases TTGACCAATTTTGAGCCGAAAAAATTAAAGAATATTTGGACTATTGAAGATAGTATTTCGACTTATAACATAGACAAATG GGGAGATAAATATTTTTCTATAAATTCCAAAGGAAATATATCAGTAACTAAAGATATAAAATCTGAAAATAAGATTGATC TTTTTAAGCTTGTCAAAGAACTTAAGAGTAGAGAAATAAATCCCCCATTAATTATAAGATTTAATGATATCTTGAAAGAT CGCATAAATGCATTACATGACTCTTTTTTTAAAGCAATAAAAACCTATAAATATAAGAACATTTATCAAGGCGTTTTTCC TGTCAAATGTAATCAACAGAAAAATGTCCTAGAAAAGATAATAGAGTTTGGTAGCCAATGGAATTTTGGTTTAGAAGTAG GAAGTAAATCAGAACTATTAATTGGCCTTGCACTTCTTGAAAACCAAAATTCATTATTAATTTGCAACGGATATAAAGAT AAAAAATATATTGAGATTGCTACTTTGGCCAGAAAACTCGGCAAGAATCCAATAATAGTTATTGAACAACGAGATGAGGT AAAAAGAATTATTCAAGCAGTTCAAGAACTTAACGCGACTCCATTGATAGGAATTAGAGCAAAGTTATCAAGTAAAAGTA GTGGTAGGTGGGGTAAATCTATTGGAGATAATTCCAAATTTGGATTATCAATCCCAGAAATTATGTTGACAATAAAAGAA CTAAAAGAAGCAAATCTTATCAACGAAATGAAATTGCTCCATTTTCATATAGGCAGTCAAATAAGTGATATTGCTGTGAT CAAAGACGCATTACAAGAAGCGAGTCAAATATATGTTGAACTATGCAAACTAGGAGCCCCAATGCAATATATCGACGTTG GGGGAGGATTAGGAATAGATTTTGATGGAACTAAAACCTCCTCCAACACCTCTACTAATTATTCTCTTCAAAATTATGCT AACGATGTAATTGCAACTATTAAGGATTCATGTGAATTAAATAATATAAAGCATCCAATCATAATCTCAGAAAGTGGAAG AGCAATAATTAGTCATTGTTCAGTTTTAATTTTTAATGTCTTAGGAACAAGCCATGTCAGTTCCAAACTACAAATTTTTG ATAAAAAAAATCAACAATTAATAATTTCAAATTTACTTGAAACTTTCTATGAATTAAAAAAACTTAAAAATAAAAAAATA AATTTATCTCAAATAATTGAACTATGGAACGATGCAAAAAAGTTTAAAGAAGATTGCTTAGTCGCTTTTAGATTAGGATT TTTAAGTTTGGCAGAGAGAGCTTATGCCGAAGAACTTACTTGGGCTTGCGCAAAAGAAATTTCTAAAAACCTGAATAATG ATGCAATAAATCACCCTGATTTATCTGAAATTACAGAAACTCTTGCATCAACTTATTATGCAAATTTATCTATCTTTAAA TCTATTCCCGATAGCTGGGCAATAAATCAGATTTTTCCAATAGTACCAATACATAGGCACTTAGAGGAGCCTTTCTGCAA AGGCAACTTTGCAGATTTAACTTGTGATTCAGATGGGAAACTGAATAATTTTATTGATGATGGAAAAATTAAATCATTAC TAAATTTACATAAGCCAGAAGAAGATAAAGATTATCTAATTGGCATTTTTATGACTGGAGCCTATCAAGAAGCATTAGGA AACTTGCACAATTTATTTGGCAGTACAAACGTTGTTCATATAGACATAAATCAAGATAATTCATATAAGGTCAAAAATAT TATTAAAGAGGACAGTAAATCTGAAATTTTACAATTATTAGATTACAGTTCAGCTTCTTTGGTTGAATCTATAAGAATTA ATACTGAATCAGCAATTGATCAAAAAAAATTAACTATTGAAGAAGCAAGGAAATTAATGGATCAAATCGAAATTAGTCTC AGAAAAAGTAGTTATTTATCAGAATGA
Upstream 100 bases:
>100_bases ATATTCAACTTTTGGGTGGTAACTTGGCAAGTAATCATTAAAATAAAAGATATTGTTTTGAGTTATTTTCAAAAACATTT ATTAATCACTAAGACATAAA
Downstream 100 bases:
>100_bases CTATCTAATGTTTTTTGCAAATAATTTTTAGCATAATCTAGAGCATCACTTAACTTATCAATATCTTTAGCACCTGCTTG AGCAAAGTTAGGCTTTCCTC
Product: arginine decarboxylase
Products: NA
Alternate protein names: ADC [H]
Number of amino acids: Translated: 648; Mature: 647
Protein sequence:
>648_residues MTNFEPKKLKNIWTIEDSISTYNIDKWGDKYFSINSKGNISVTKDIKSENKIDLFKLVKELKSREINPPLIIRFNDILKD RINALHDSFFKAIKTYKYKNIYQGVFPVKCNQQKNVLEKIIEFGSQWNFGLEVGSKSELLIGLALLENQNSLLICNGYKD KKYIEIATLARKLGKNPIIVIEQRDEVKRIIQAVQELNATPLIGIRAKLSSKSSGRWGKSIGDNSKFGLSIPEIMLTIKE LKEANLINEMKLLHFHIGSQISDIAVIKDALQEASQIYVELCKLGAPMQYIDVGGGLGIDFDGTKTSSNTSTNYSLQNYA NDVIATIKDSCELNNIKHPIIISESGRAIISHCSVLIFNVLGTSHVSSKLQIFDKKNQQLIISNLLETFYELKKLKNKKI NLSQIIELWNDAKKFKEDCLVAFRLGFLSLAERAYAEELTWACAKEISKNLNNDAINHPDLSEITETLASTYYANLSIFK SIPDSWAINQIFPIVPIHRHLEEPFCKGNFADLTCDSDGKLNNFIDDGKIKSLLNLHKPEEDKDYLIGIFMTGAYQEALG NLHNLFGSTNVVHIDINQDNSYKVKNIIKEDSKSEILQLLDYSSASLVESIRINTESAIDQKKLTIEEARKLMDQIEISL RKSSYLSE
Sequences:
>Translated_648_residues MTNFEPKKLKNIWTIEDSISTYNIDKWGDKYFSINSKGNISVTKDIKSENKIDLFKLVKELKSREINPPLIIRFNDILKD RINALHDSFFKAIKTYKYKNIYQGVFPVKCNQQKNVLEKIIEFGSQWNFGLEVGSKSELLIGLALLENQNSLLICNGYKD KKYIEIATLARKLGKNPIIVIEQRDEVKRIIQAVQELNATPLIGIRAKLSSKSSGRWGKSIGDNSKFGLSIPEIMLTIKE LKEANLINEMKLLHFHIGSQISDIAVIKDALQEASQIYVELCKLGAPMQYIDVGGGLGIDFDGTKTSSNTSTNYSLQNYA NDVIATIKDSCELNNIKHPIIISESGRAIISHCSVLIFNVLGTSHVSSKLQIFDKKNQQLIISNLLETFYELKKLKNKKI NLSQIIELWNDAKKFKEDCLVAFRLGFLSLAERAYAEELTWACAKEISKNLNNDAINHPDLSEITETLASTYYANLSIFK SIPDSWAINQIFPIVPIHRHLEEPFCKGNFADLTCDSDGKLNNFIDDGKIKSLLNLHKPEEDKDYLIGIFMTGAYQEALG NLHNLFGSTNVVHIDINQDNSYKVKNIIKEDSKSEILQLLDYSSASLVESIRINTESAIDQKKLTIEEARKLMDQIEISL RKSSYLSE >Mature_647_residues TNFEPKKLKNIWTIEDSISTYNIDKWGDKYFSINSKGNISVTKDIKSENKIDLFKLVKELKSREINPPLIIRFNDILKDR INALHDSFFKAIKTYKYKNIYQGVFPVKCNQQKNVLEKIIEFGSQWNFGLEVGSKSELLIGLALLENQNSLLICNGYKDK KYIEIATLARKLGKNPIIVIEQRDEVKRIIQAVQELNATPLIGIRAKLSSKSSGRWGKSIGDNSKFGLSIPEIMLTIKEL KEANLINEMKLLHFHIGSQISDIAVIKDALQEASQIYVELCKLGAPMQYIDVGGGLGIDFDGTKTSSNTSTNYSLQNYAN DVIATIKDSCELNNIKHPIIISESGRAIISHCSVLIFNVLGTSHVSSKLQIFDKKNQQLIISNLLETFYELKKLKNKKIN LSQIIELWNDAKKFKEDCLVAFRLGFLSLAERAYAEELTWACAKEISKNLNNDAINHPDLSEITETLASTYYANLSIFKS IPDSWAINQIFPIVPIHRHLEEPFCKGNFADLTCDSDGKLNNFIDDGKIKSLLNLHKPEEDKDYLIGIFMTGAYQEALGN LHNLFGSTNVVHIDINQDNSYKVKNIIKEDSKSEILQLLDYSSASLVESIRINTESAIDQKKLTIEEARKLMDQIEISLR KSSYLSE
Specific function: Catalyzes the biosynthesis of agmatine from arginine [H]
COG id: COG1166
COG function: function code E; Arginine decarboxylase (spermidine biosynthesis)
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789307, Length=632, Percent_Identity=34.8101265822785, Blast_Score=447, Evalue=1e-126,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009006 - InterPro: IPR002985 - InterPro: IPR022643 - InterPro: IPR022657 - InterPro: IPR022644 - InterPro: IPR022653 - InterPro: IPR000183 [H]
Pfam domain/function: PF02784 Orn_Arg_deC_N; PF00278 Orn_DAP_Arg_deC [H]
EC number: =4.1.1.19 [H]
Molecular weight: Translated: 73367; Mature: 73236
Theoretical pI: Translated: 7.53; Mature: 7.53
Prosite motif: PS00878 ODR_DC_2_1 ; PS00879 ODR_DC_2_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNFEPKKLKNIWTIEDSISTYNIDKWGDKYFSINSKGNISVTKDIKSENKIDLFKLVKE CCCCCCHHHCCEEEEECCCCEECCCCCCCCEEEECCCCCEEEEECCCCCCCHHHHHHHHH LKSREINPPLIIRFNDILKDRINALHDSFFKAIKTYKYKNIYQGVFPVKCNQQKNVLEKI HHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHH IEFGSQWNFGLEVGSKSELLIGLALLENQNSLLICNGYKDKKYIEIATLARKLGKNPIIV HHCCCCCCCEEECCCCCCEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE IEQRDEVKRIIQAVQELNATPLIGIRAKLSSKSSGRWGKSIGDNSKFGLSIPEIMLTIKE EECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH LKEANLINEMKLLHFHIGSQISDIAVIKDALQEASQIYVELCKLGAPMQYIDVGGGLGID HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC FDGTKTSSNTSTNYSLQNYANDVIATIKDSCELNNIKHPIIISESGRAIISHCSVLIFNV CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHH LGTSHVSSKLQIFDKKNQQLIISNLLETFYELKKLKNKKINLSQIIELWNDAKKFKEDCL HCCHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH VAFRLGFLSLAERAYAEELTWACAKEISKNLNNDAINHPDLSEITETLASTYYANLSIFK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH SIPDSWAINQIFPIVPIHRHLEEPFCKGNFADLTCDSDGKLNNFIDDGKIKSLLNLHKPE HCCCCCCHHHHCCCCCHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCC EDKDYLIGIFMTGAYQEALGNLHNLFGSTNVVHIDINQDNSYKVKNIIKEDSKSEILQLL CCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHCCCHHHHHHHH DYSSASLVESIRINTESAIDQKKLTIEEARKLMDQIEISLRKSSYLSE CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TNFEPKKLKNIWTIEDSISTYNIDKWGDKYFSINSKGNISVTKDIKSENKIDLFKLVKE CCCCCHHHCCEEEEECCCCEECCCCCCCCEEEECCCCCEEEEECCCCCCCHHHHHHHHH LKSREINPPLIIRFNDILKDRINALHDSFFKAIKTYKYKNIYQGVFPVKCNQQKNVLEKI HHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHH IEFGSQWNFGLEVGSKSELLIGLALLENQNSLLICNGYKDKKYIEIATLARKLGKNPIIV HHCCCCCCCEEECCCCCCEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE IEQRDEVKRIIQAVQELNATPLIGIRAKLSSKSSGRWGKSIGDNSKFGLSIPEIMLTIKE EECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH LKEANLINEMKLLHFHIGSQISDIAVIKDALQEASQIYVELCKLGAPMQYIDVGGGLGID HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC FDGTKTSSNTSTNYSLQNYANDVIATIKDSCELNNIKHPIIISESGRAIISHCSVLIFNV CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHH LGTSHVSSKLQIFDKKNQQLIISNLLETFYELKKLKNKKINLSQIIELWNDAKKFKEDCL HCCHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH VAFRLGFLSLAERAYAEELTWACAKEISKNLNNDAINHPDLSEITETLASTYYANLSIFK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH SIPDSWAINQIFPIVPIHRHLEEPFCKGNFADLTCDSDGKLNNFIDDGKIKSLLNLHKPE HCCCCCCHHHHCCCCCHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCC EDKDYLIGIFMTGAYQEALGNLHNLFGSTNVVHIDINQDNSYKVKNIIKEDSKSEILQLL CCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHCCCHHHHHHHH DYSSASLVESIRINTESAIDQKKLTIEEARKLMDQIEISLRKSSYLSE CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA