| Definition | Prochlorococcus marinus str. MIT 9312, complete genome. |
|---|---|
| Accession | NC_007577 |
| Length | 1,709,204 |
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The map label for this gene is gyrA [H]
Identifier: 78778390
GI number: 78778390
Start: 5916
End: 8357
Strand: Reverse
Name: gyrA [H]
Synonym: PMT9312_0005
Alternate gene names: 78778390
Gene position: 8357-5916 (Counterclockwise)
Preceding gene: 78778391
Following gene: NA
Centisome position: 0.49
GC content: 26.62
Gene sequence:
>2442_bases ATGGATAAGAAAAAATTCACTTCTATCTCTCTCCAAGAAGAAATGCAACGTTCTTATTTGGAGTATGCAATGAGTGTAAT AGTTGGTCGTGCTTTACCCGATGCAAGAGACGGTCTTAAGCCTGTACAAAGAAGAATACTTTTTGCAATGTATGAATTAG GTTTAACACCAGATAAGCCATTTAGAAAGTGTGCCAGAGTTGTTGGAGATGTACTTGGAAAATATCATCCTCATGGAGAT CAGGCAGTATATGATGCATTAGTCAGGCTAGTTCAAAATTTTTCAACTAAATATCCTACTCTAGACGGCCATGGGAATTT TGGATCTGTAGATAATGATCCGCCAGCAGCAATGAGATACACAGAGACCAGATTAGCACCGATATCACATAAAGGATTTC TTGAAGAGATAGATTCAGAAACAGTAAATTTCTCAAATAACTTTGACGGTTCACAAAAAGAACCAGATGTTCTTCCAGCC CAACTTCCATTTTTATTATTGAACGGATCATCAGGTATTGCAGTTGGAATGGCAACAAACATTCCCCCCCACAATCTAGG GGAAATAGTAGATGGTTTAATTGCTCTAATCAACAATAAAGAGGTAAGTAATAAAAAACTTTCTAATATAATTAAAGGAC CTGATTTTCCTACAGGGGGAGAGTTAATTTATAGTCGTGCAATAGAAGAACTTTACGCCACAGGAAAAGGTTCAATCACA ATAAGAGGTGTCATAAATTCAGAAGCAATAAATTTAGGCAAAGGTAAACATAAAAGAAATGCATTAATCATTACTGAACT TCCTTTTCAAATCAGTAAGGCAGGATGGATTGAAAAACTAGCAGAACTTGTTAATTCAAGCAAAATTAATGGGATCTCTG ATATTAGGGACGAAAGTGATAGAGATGGAATGAGAATTGTAATAGAGTTAAAAAAAGATTCTAATGCTGAACTTGTAATT TCTAATTTATATAAAAAAACTACTCTCCAAACCAACTTTGGTGCCATTTTTTTAGCATTAATAAAGGGCAAACCTGTCCA ACTAAACTTAAAACAATATCTAAACTATTTTCTTGAATTTAGAGAAGAAACAATTAGAAAAAGAACTAATTATTTTCTGA AAAACACTCTTGAAAAACTAGAAATATTAGAAGGTTTATCTAAAGCAACAAAAAACATCAAAAAAATTATCGAGATTATT GAAGATTCAGAAAATTCTGCTGAAGCCAAATCAAAATTAATTGATATTTTCTACTTAAGTGCAAAACAGGCAAATTCAGT TTTGGATATGCCTCTAAAAAAATTAACAAATCTGGAAAAAAATCAAATTGATGAGGATATAAGAAAATTACAAGAAAAAA AAGATTATTTTCAAAATTTATTAAATGAAAGAAAATTATTACTTGAATTACTAGTAGATGAATTATTAATATTAAAGAAA AAATATAATGTTAAAAGAAAAACAAAACTACTTAAAAATATTGATCAAAATGAAGAATTAGAAACAATTAATAATCAGAT ATTAGAAGACTTTATCAATAAAAAAACTAAATTATTTATAGACAACAGATTATATTTAAGAAAGATGATTTTAAATAATT ATAAAAAATCGTTTGAAGATGTAAATAAAATTATAGATAATAAAAACATTCAAAAATTCATATGTAATATCGATAAAAAT GTAAAAATAATTGGGATCACATATACAGGAAAAGTTTTTCATATTAATTGGGAGTCAAATATTAATAATGACTATAAATT AGATAAAAAAATCATTGGGAATATTGATCAAAATAAAATAATAAATTTTCATTCAATAAAAAAGGGAATTAAAAATTATT TATGTATCTTAAATTCAGATGGAAGATTTAAAAAAGTTTTGTTTGATGAAGATATGATTAAAAGTAATAGATGTTTCTCA ATAACAAAATTAAAAAATAATATTAAAACAATTGATTCATTTATTTTTAGTGAAGAAAAAAATTTAATAATATTAACCTC AATAGGAAGAATGTTTAAATTTAATTTATCAAACAAATTTTTAACCCCGACTACTAAACAATCGCAAGGATTAATGCTTA CAAAACTTTTACCAACTGAAAAAATTGTATCTTGTTGTTCATATCAAAATGGAGAAAATATTTACTTAGTTTCTAGAAAA GGGAAAATCTTTTGTATAAATAGTAATGAAATTTATTATGCCAATGAATACAGTTTAGGATATTTAAATGAAATTACTCA ACTTAAAAACGATTACTTCCTAAAAATTTTGCCGAGTAACCATTACCTTGATATTGAAACTAATAAAAATAAATCTGCTA GGTTAAATTTTGATAAATTGAATTTTAAATCTAAGAAAACAAATTTTTTAATTGACTTTTTAAAATTAGACGATGAGGAA TATATTGAAAATTGTTTTCAACTCGAAAACTTTCTTGACTAA
Upstream 100 bases:
>100_bases CAAAAATAAATACATCTTCTTAATTTCCAATACTGGTAAATATTTGTTTACCTATTAGTCTTAATTTAATAAATCAATAA ATATTTAATTTTACGCTCTG
Downstream 100 bases:
>100_bases GATTTATATTCATTTTCAACCCAATTTAAATATTCTTGATTTACTTTTCCTGTTACATAAATACCAGTAAAGCAACTCAT CTCTAAATCTTCAATAGGAG
Product: DNA topoisomerase IV subunit A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 813; Mature: 813
Protein sequence:
>813_residues MDKKKFTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMYELGLTPDKPFRKCARVVGDVLGKYHPHGD QAVYDALVRLVQNFSTKYPTLDGHGNFGSVDNDPPAAMRYTETRLAPISHKGFLEEIDSETVNFSNNFDGSQKEPDVLPA QLPFLLLNGSSGIAVGMATNIPPHNLGEIVDGLIALINNKEVSNKKLSNIIKGPDFPTGGELIYSRAIEELYATGKGSIT IRGVINSEAINLGKGKHKRNALIITELPFQISKAGWIEKLAELVNSSKINGISDIRDESDRDGMRIVIELKKDSNAELVI SNLYKKTTLQTNFGAIFLALIKGKPVQLNLKQYLNYFLEFREETIRKRTNYFLKNTLEKLEILEGLSKATKNIKKIIEII EDSENSAEAKSKLIDIFYLSAKQANSVLDMPLKKLTNLEKNQIDEDIRKLQEKKDYFQNLLNERKLLLELLVDELLILKK KYNVKRKTKLLKNIDQNEELETINNQILEDFINKKTKLFIDNRLYLRKMILNNYKKSFEDVNKIIDNKNIQKFICNIDKN VKIIGITYTGKVFHINWESNINNDYKLDKKIIGNIDQNKIINFHSIKKGIKNYLCILNSDGRFKKVLFDEDMIKSNRCFS ITKLKNNIKTIDSFIFSEEKNLIILTSIGRMFKFNLSNKFLTPTTKQSQGLMLTKLLPTEKIVSCCSYQNGENIYLVSRK GKIFCINSNEIYYANEYSLGYLNEITQLKNDYFLKILPSNHYLDIETNKNKSARLNFDKLNFKSKKTNFLIDFLKLDDEE YIENCFQLENFLD
Sequences:
>Translated_813_residues MDKKKFTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMYELGLTPDKPFRKCARVVGDVLGKYHPHGD QAVYDALVRLVQNFSTKYPTLDGHGNFGSVDNDPPAAMRYTETRLAPISHKGFLEEIDSETVNFSNNFDGSQKEPDVLPA QLPFLLLNGSSGIAVGMATNIPPHNLGEIVDGLIALINNKEVSNKKLSNIIKGPDFPTGGELIYSRAIEELYATGKGSIT IRGVINSEAINLGKGKHKRNALIITELPFQISKAGWIEKLAELVNSSKINGISDIRDESDRDGMRIVIELKKDSNAELVI SNLYKKTTLQTNFGAIFLALIKGKPVQLNLKQYLNYFLEFREETIRKRTNYFLKNTLEKLEILEGLSKATKNIKKIIEII EDSENSAEAKSKLIDIFYLSAKQANSVLDMPLKKLTNLEKNQIDEDIRKLQEKKDYFQNLLNERKLLLELLVDELLILKK KYNVKRKTKLLKNIDQNEELETINNQILEDFINKKTKLFIDNRLYLRKMILNNYKKSFEDVNKIIDNKNIQKFICNIDKN VKIIGITYTGKVFHINWESNINNDYKLDKKIIGNIDQNKIINFHSIKKGIKNYLCILNSDGRFKKVLFDEDMIKSNRCFS ITKLKNNIKTIDSFIFSEEKNLIILTSIGRMFKFNLSNKFLTPTTKQSQGLMLTKLLPTEKIVSCCSYQNGENIYLVSRK GKIFCINSNEIYYANEYSLGYLNEITQLKNDYFLKILPSNHYLDIETNKNKSARLNFDKLNFKSKKTNFLIDFLKLDDEE YIENCFQLENFLD >Mature_813_residues MDKKKFTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMYELGLTPDKPFRKCARVVGDVLGKYHPHGD QAVYDALVRLVQNFSTKYPTLDGHGNFGSVDNDPPAAMRYTETRLAPISHKGFLEEIDSETVNFSNNFDGSQKEPDVLPA QLPFLLLNGSSGIAVGMATNIPPHNLGEIVDGLIALINNKEVSNKKLSNIIKGPDFPTGGELIYSRAIEELYATGKGSIT IRGVINSEAINLGKGKHKRNALIITELPFQISKAGWIEKLAELVNSSKINGISDIRDESDRDGMRIVIELKKDSNAELVI SNLYKKTTLQTNFGAIFLALIKGKPVQLNLKQYLNYFLEFREETIRKRTNYFLKNTLEKLEILEGLSKATKNIKKIIEII EDSENSAEAKSKLIDIFYLSAKQANSVLDMPLKKLTNLEKNQIDEDIRKLQEKKDYFQNLLNERKLLLELLVDELLILKK KYNVKRKTKLLKNIDQNEELETINNQILEDFINKKTKLFIDNRLYLRKMILNNYKKSFEDVNKIIDNKNIQKFICNIDKN VKIIGITYTGKVFHINWESNINNDYKLDKKIIGNIDQNKIINFHSIKKGIKNYLCILNSDGRFKKVLFDEDMIKSNRCFS ITKLKNNIKTIDSFIFSEEKNLIILTSIGRMFKFNLSNKFLTPTTKQSQGLMLTKLLPTEKIVSCCSYQNGENIYLVSRK GKIFCINSNEIYYANEYSLGYLNEITQLKNDYFLKILPSNHYLDIETNKNKSARLNFDKLNFKSKKTNFLIDFLKLDDEE YIENCFQLENFLD
Specific function: DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings [H]
COG id: COG0188
COG function: function code L; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the topoisomerase gyrA/parC subunit family [H]
Homologues:
Organism=Homo sapiens, GI19913408, Length=352, Percent_Identity=27.5568181818182, Blast_Score=82, Evalue=2e-15, Organism=Homo sapiens, GI19913406, Length=321, Percent_Identity=27.4143302180685, Blast_Score=79, Evalue=1e-14, Organism=Escherichia coli, GI1788562, Length=773, Percent_Identity=35.7050452781371, Blast_Score=468, Evalue=1e-133, Organism=Escherichia coli, GI1789396, Length=691, Percent_Identity=34.7322720694645, Blast_Score=367, Evalue=1e-102, Organism=Caenorhabditis elegans, GI212645845, Length=320, Percent_Identity=27.8125, Blast_Score=86, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17535065, Length=175, Percent_Identity=33.1428571428571, Blast_Score=78, Evalue=2e-14, Organism=Caenorhabditis elegans, GI115534553, Length=171, Percent_Identity=31.5789473684211, Blast_Score=71, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6324241, Length=383, Percent_Identity=26.6318537859008, Blast_Score=83, Evalue=1e-16, Organism=Drosophila melanogaster, GI17136538, Length=320, Percent_Identity=26.5625, Blast_Score=76, Evalue=8e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020899 - InterPro: IPR005743 - InterPro: IPR006691 - InterPro: IPR002205 - InterPro: IPR013758 - InterPro: IPR013757 - InterPro: IPR013760 [H]
Pfam domain/function: PF03989 DNA_gyraseA_C; PF00521 DNA_topoisoIV [H]
EC number: =5.99.1.3 [H]
Molecular weight: Translated: 93473; Mature: 93473
Theoretical pI: Translated: 9.56; Mature: 9.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKKKFTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMYELGLTPDKP CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHCCCCCHH FRKCARVVGDVLGKYHPHGDQAVYDALVRLVQNFSTKYPTLDGHGNFGSVDNDPPAAMRY HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEE TETRLAPISHKGFLEEIDSETVNFSNNFDGSQKEPDVLPAQLPFLLLNGSSGIAVGMATN HHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECC IPPHNLGEIVDGLIALINNKEVSNKKLSNIIKGPDFPTGGELIYSRAIEELYATGKGSIT CCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEE IRGVINSEAINLGKGKHKRNALIITELPFQISKAGWIEKLAELVNSSKINGISDIRDESD EEEEECCCCEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCC RDGMRIVIELKKDSNAELVISNLYKKTTLQTNFGAIFLALIKGKPVQLNLKQYLNYFLEF CCCCEEEEEEECCCCCCEEHHHHHHHHHCCCCHHHHEEHHHCCCCEEEEHHHHHHHHHHH REETIRKRTNYFLKNTLEKLEILEGLSKATKNIKKIIEIIEDSENSAEAKSKLIDIFYLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEE AKQANSVLDMPLKKLTNLEKNQIDEDIRKLQEKKDYFQNLLNERKLLLELLVDELLILKK CHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KYNVKRKTKLLKNIDQNEELETINNQILEDFINKKTKLFIDNRLYLRKMILNNYKKSFED HCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHH VNKIIDNKNIQKFICNIDKNVKIIGITYTGKVFHINWESNINNDYKLDKKIIGNIDQNKI HHHHHCCCCHHHHHHCCCCCEEEEEEEEECEEEEEEECCCCCCCCEECHHHHCCCCCCCE INFHSIKKGIKNYLCILNSDGRFKKVLFDEDMIKSNRCFSITKLKNNIKTIDSFIFSEEK EEHHHHHHHHHHEEEEECCCCCEEEEEECHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCC NLIILTSIGRMFKFNLSNKFLTPTTKQSQGLMLTKLLPTEKIVSCCSYQNGENIYLVSRK CEEEEEECCCEEEEECCCCEECCCCCCCCCEEEEECCCHHHHHHHHCCCCCCEEEEEECC GKIFCINSNEIYYANEYSLGYLNEITQLKNDYFLKILPSNHYLDIETNKNKSARLNFDKL CEEEEEECCEEEEECCCCCHHHHHHHHHCCCEEEEEECCCEEEEEEECCCCCEEECHHHC NFKSKKTNFLIDFLKLDDEEYIENCFQLENFLD CCCCCCCHHEEEHHHCCCHHHHHHHHHHHHHCC >Mature Secondary Structure MDKKKFTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMYELGLTPDKP CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHCCCCCHH FRKCARVVGDVLGKYHPHGDQAVYDALVRLVQNFSTKYPTLDGHGNFGSVDNDPPAAMRY HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEE TETRLAPISHKGFLEEIDSETVNFSNNFDGSQKEPDVLPAQLPFLLLNGSSGIAVGMATN HHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECC IPPHNLGEIVDGLIALINNKEVSNKKLSNIIKGPDFPTGGELIYSRAIEELYATGKGSIT CCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEE IRGVINSEAINLGKGKHKRNALIITELPFQISKAGWIEKLAELVNSSKINGISDIRDESD EEEEECCCCEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCC RDGMRIVIELKKDSNAELVISNLYKKTTLQTNFGAIFLALIKGKPVQLNLKQYLNYFLEF CCCCEEEEEEECCCCCCEEHHHHHHHHHCCCCHHHHEEHHHCCCCEEEEHHHHHHHHHHH REETIRKRTNYFLKNTLEKLEILEGLSKATKNIKKIIEIIEDSENSAEAKSKLIDIFYLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEE AKQANSVLDMPLKKLTNLEKNQIDEDIRKLQEKKDYFQNLLNERKLLLELLVDELLILKK CHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KYNVKRKTKLLKNIDQNEELETINNQILEDFINKKTKLFIDNRLYLRKMILNNYKKSFED HCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHH VNKIIDNKNIQKFICNIDKNVKIIGITYTGKVFHINWESNINNDYKLDKKIIGNIDQNKI HHHHHCCCCHHHHHHCCCCCEEEEEEEEECEEEEEEECCCCCCCCEECHHHHCCCCCCCE INFHSIKKGIKNYLCILNSDGRFKKVLFDEDMIKSNRCFSITKLKNNIKTIDSFIFSEEK EEHHHHHHHHHHEEEEECCCCCEEEEEECHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCC NLIILTSIGRMFKFNLSNKFLTPTTKQSQGLMLTKLLPTEKIVSCCSYQNGENIYLVSRK CEEEEEECCCEEEEECCCCEECCCCCCCCCEEEEECCCHHHHHHHHCCCCCCEEEEEECC GKIFCINSNEIYYANEYSLGYLNEITQLKNDYFLKILPSNHYLDIETNKNKSARLNFDKL CEEEEEECCEEEEECCCCCHHHHHHHHHCCCEEEEEECCCEEEEEEECCCCCEEECHHHC NFKSKKTNFLIDFLKLDDEEYIENCFQLENFLD CCCCCCCHHEEEHHHCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]