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The map label for this gene is fliN [H]

Identifier: 78358624

GI number: 78358624

Start: 3543532

End: 3544059

Strand: Reverse

Name: fliN [H]

Synonym: Dde_3585

Alternate gene names: 78358624

Gene position: 3544059-3543532 (Counterclockwise)

Preceding gene: 78358625

Following gene: 78358623

Centisome position: 95.01

GC content: 58.71

Gene sequence:

>528_bases
ATGGCAGAAAAAGACGTCGATCAGGATGCATTGGCCGCACAGTGGGCCGCTGCGCTGGAAGAGCAGGAAGGCGACGATTC
CGGCGGCGGGGGCGGTACCAGCGCCGGTGAGGAACAGCTGGCTGCGGAATGGGCTGCCGCTCTGGCAAACGAAGAGCAGG
ACCAGTTGAAAAAAGAAAAAGAACAGGGATTTTACGCTTCGGCCGCGCGGGATATGGAGTTCAAAGACCTGACCGAAGAA
GCCAAATCGCCCCGTCCGGATTCGGGCAAGCGCGAACTCGACTTCATTCTGGATATCCCGCTGGATGTCTCTGCCGAGCT
CGGGCGTACCCGTCTGCTGATCAACGAACTGCTCCAGCTGGGGCAGGGTTCGGTGGTTGAACTGAACAAACTGGCCGGTG
AACCGCTTGAAATTTATGTCAACGGCAAGCTGGTGGCCCGCGGCGAGGCCGTGGTCATCAACGAAAAATTCGGCGTGCGG
CTGACAGACATCATCAGCCCCATTGAACGCGTCAAACAGCTGGGCTAG

Upstream 100 bases:

>100_bases
TCCAAGGTGCGGCAGGTCTACTTCACCGAGATGGTCATCCAGTAAATGAACGCTGATGCTGACTGTGCCGGCAGGCGCAG
CCAGACAAGAGGATAGCGAT

Downstream 100 bases:

>100_bases
CGGGTACGGCGGTATGCATAACGCTTCGCTTAGTGCGGCGGAAGCCGTCGGGGGCGCTGTTGCCGCACGGCTGAACGCCA
CTGCGGGAGCAGATGGTGTG

Product: surface presentation of antigens (SPOA) protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MAEKDVDQDALAAQWAAALEEQEGDDSGGGGGTSAGEEQLAAEWAAALANEEQDQLKKEKEQGFYASAARDMEFKDLTEE
AKSPRPDSGKRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEIYVNGKLVARGEAVVINEKFGVR
LTDIISPIERVKQLG

Sequences:

>Translated_175_residues
MAEKDVDQDALAAQWAAALEEQEGDDSGGGGGTSAGEEQLAAEWAAALANEEQDQLKKEKEQGFYASAARDMEFKDLTEE
AKSPRPDSGKRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEIYVNGKLVARGEAVVINEKFGVR
LTDIISPIERVKQLG
>Mature_174_residues
AEKDVDQDALAAQWAAALEEQEGDDSGGGGGTSAGEEQLAAEWAAALANEEQDQLKKEKEQGFYASAARDMEFKDLTEEA
KSPRPDSGKRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEIYVNGKLVARGEAVVINEKFGVRL
TDIISPIERVKQLG

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=132, Percent_Identity=44.6969696969697, Blast_Score=110, Evalue=5e-26,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 18938; Mature: 18807

Theoretical pI: Translated: 4.09; Mature: 4.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEKDVDQDALAAQWAAALEEQEGDDSGGGGGTSAGEEQLAAEWAAALANEEQDQLKKEK
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
EQGFYASAARDMEFKDLTEEAKSPRPDSGKRELDFILDIPLDVSAELGRTRLLINELLQL
HCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
GQGSVVELNKLAGEPLEIYVNGKLVARGEAVVINEKFGVRLTDIISPIERVKQLG
CCCCEEEHHHHCCCCEEEEECCEEEECCCEEEEECCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AEKDVDQDALAAQWAAALEEQEGDDSGGGGGTSAGEEQLAAEWAAALANEEQDQLKKEK
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
EQGFYASAARDMEFKDLTEEAKSPRPDSGKRELDFILDIPLDVSAELGRTRLLINELLQL
HCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
GQGSVVELNKLAGEPLEIYVNGKLVARGEAVVINEKFGVRLTDIISPIERVKQLG
CCCCEEEHHHHCCCCEEEEECCEEEECCCEEEEECCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7622217; 10984043 [H]