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The map label for this gene is arrD [H]

Identifier: 78358460

GI number: 78358460

Start: 3384218

End: 3384664

Strand: Reverse

Name: arrD [H]

Synonym: Dde_3421

Alternate gene names: 78358460

Gene position: 3384664-3384218 (Counterclockwise)

Preceding gene: 78358461

Following gene: 78358450

Centisome position: 90.74

GC content: 68.01

Gene sequence:

>447_bases
ATGGCCATCGACTTGGCCAAGCGCTTCGAGGGCTTCCACCGCGTGCCGAAGACCGATCCGGGTCGTGCTCATCCGTACAT
ATGCCCGGCAGGCTTCTGGACGATTGGCTACGGCCACCTCTGTGATCCCAAGCACCCGCCGATCACCGAGGCCGAAGCCG
AGGTCTATCTGGCGCGCGACCTCCAATCGGCGCTCGCCGCCACGCTGCGCTACTGCCCGGTGTTGGCCACCGAACCCGAG
AGCAGGCTCGCTGCCATCGTGGATTTCACGTTCAACCTTGGCGCCGGTCGGCTGCAGACCTCAACGCTACGACGACGCAT
CAACCGGCGGGACTGGCCCGCTGCCGCGACTGAGCTGCGGCGCTGGGTCTATGGCGGCGGCAGGGTGCTGCCGGGGCTTG
TCACGCGGCGGGAGGCTGAGGCCACTTGCCTGCTCCGCGCCGCCTGA

Upstream 100 bases:

>100_bases
GCGTCGAAGAGGCCGACCAGGCGCTGTGGGCCGGGGTGCTGAACTTCTGGTTTTTGGGTCGCGTGTTCGACCGGGTGCGG
CCGTGATCGAGGTGCCGCAA

Downstream 100 bases:

>100_bases
TAGACCGGGTCGATTCAGTCAAATCCCCGGTTGCAGCTCCACACGCACTTCGCGCGTTTTGCCGGCCCGTTCCACTGACA
AGACCACCACATCGCCGACC

Product: prophage LambdaMc01, lysozyme

Products: NA

Alternate protein names: Endolysin; Lysis protein; Muramidase [H]

Number of amino acids: Translated: 148; Mature: 147

Protein sequence:

>148_residues
MAIDLAKRFEGFHRVPKTDPGRAHPYICPAGFWTIGYGHLCDPKHPPITEAEAEVYLARDLQSALAATLRYCPVLATEPE
SRLAAIVDFTFNLGAGRLQTSTLRRRINRRDWPAAATELRRWVYGGGRVLPGLVTRREAEATCLLRAA

Sequences:

>Translated_148_residues
MAIDLAKRFEGFHRVPKTDPGRAHPYICPAGFWTIGYGHLCDPKHPPITEAEAEVYLARDLQSALAATLRYCPVLATEPE
SRLAAIVDFTFNLGAGRLQTSTLRRRINRRDWPAAATELRRWVYGGGRVLPGLVTRREAEATCLLRAA
>Mature_147_residues
AIDLAKRFEGFHRVPKTDPGRAHPYICPAGFWTIGYGHLCDPKHPPITEAEAEVYLARDLQSALAATLRYCPVLATEPES
RLAAIVDFTFNLGAGRLQTSTLRRRINRRDWPAAATELRRWVYGGGRVLPGLVTRREAEATCLLRAA

Specific function: Essential for lysis of bacterial cell wall, by showing cell wall hydrolyzing activity [H]

COG id: COG3772

COG function: function code R; Phage-related lysozyme (muraminidase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 24 family [H]

Homologues:

Organism=Escherichia coli, GI1786768, Length=123, Percent_Identity=39.0243902439024, Blast_Score=80, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002196 [H]

Pfam domain/function: PF00959 Phage_lysozyme [H]

EC number: =3.2.1.17 [H]

Molecular weight: Translated: 16499; Mature: 16368

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIDLAKRFEGFHRVPKTDPGRAHPYICPAGFWTIGYGHLCDPKHPPITEAEAEVYLARD
CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHH
LQSALAATLRYCPVLATEPESRLAAIVDFTFNLGAGRLQTSTLRRRINRRDWPAAATELR
HHHHHHHHHHHCCCCCCCCHHHHEEHHHHEECCCCCCCHHHHHHHHHCCCCCCHHHHHHH
RWVYGGGRVLPGLVTRREAEATCLLRAA
HHHHCCCEECCHHHHCCCCCCEEEEECC
>Mature Secondary Structure 
AIDLAKRFEGFHRVPKTDPGRAHPYICPAGFWTIGYGHLCDPKHPPITEAEAEVYLARD
CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHH
LQSALAATLRYCPVLATEPESRLAAIVDFTFNLGAGRLQTSTLRRRINRRDWPAAATELR
HHHHHHHHHHHCCCCCCCCHHHHEEHHHHEECCCCCCCHHHHHHHHHCCCCCCHHHHHHH
RWVYGGGRVLPGLVTRREAEATCLLRAA
HHHHCCCEECCHHHHCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]