Click here to switch to the map view.

The map label for this gene is phnF [C]

Identifier: 78358367

GI number: 78358367

Start: 3312770

End: 3313525

Strand: Reverse

Name: phnF [C]

Synonym: Dde_3327

Alternate gene names: 78358367

Gene position: 3313525-3312770 (Counterclockwise)

Preceding gene: 78358377

Following gene: 78358363

Centisome position: 88.83

GC content: 64.81

Gene sequence:

>756_bases
ATGACGCATGACACGGTACCTGTTGCGCATCGGGAACTGGAACGGGGAAACGGAGTGGCGCTGTGGCGCCAGATTCAGGC
TGTGCTGGAGCATGACCTGCGCAGCGGATATGTGGCTGCAGGTGAAAAACTGCCCACGGAGCGGCAGCTGGCACAGCGTT
TCGGCGTAAACCGCCATACCGTGAGGCAGGCGCTGGCTGAACTTGCCCGTAAGGAGCTTATCGTTGTGGAACAGGGACGC
GGCGCGTTCGCCCGCAGGGACAAGCTTGATTACGCGCTTGCGCGGCGGGTCCGCTTCAGCGAAAACCTGCTGCGGCAGAG
CCGTATTCCCAGTGAGCGGCTGCTGGGCAGCGACAAAGTGCAGGCCGGGCGCAGGGCGGCGGAAGCGCTGCAGGTGCTGC
CCGCCACGATGCTGCTGCGGCTGCGCACCGTGGGTAATGCCGACGGCCGCCCCCTGTGCTGCACCACGCACTATTTTCCG
TACGGGCGGTTTGCGGGTTTTGCCGCTGTCTACGGACAGCTGCATTCCGTCACTGCTGCATTCCGGGCGCTGGGGGTGGC
TGATTATGTACGCACCTCCACCCGCATCACGTCCAGAATGCCCGATGCCGCAGAGGTCAGGGCGCTGGGGCTGGCGCGGC
AGACTCCGGTGCTGGTGGTGGAATCGGTCAATGCCGACGGCGCCGGTACTCCCGTGGAATACGGGGTGTGCGTCTGGGCG
GCCGACCGCATCCAGTTTGTCATTGATGCCGCGTAA

Upstream 100 bases:

>100_bases
AACTTTATGTGTTTCTGTAACACTGCCGGCATGCTTTCATTCTGCCGCCCGTCTATGCTGCCTGTTCCGCATGGAACACA
GCAAAAAGGAGACGCAAGCA

Downstream 100 bases:

>100_bases
AACGTCTGCGGCGGTACAGGCGGCTGAACTGCGCATGGTTATACAAACCTGCTGCGGATGATGCCGCACATGTAATCGAT
GACGGTGACCATGAGGATGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MTHDTVPVAHRELERGNGVALWRQIQAVLEHDLRSGYVAAGEKLPTERQLAQRFGVNRHTVRQALAELARKELIVVEQGR
GAFARRDKLDYALARRVRFSENLLRQSRIPSERLLGSDKVQAGRRAAEALQVLPATMLLRLRTVGNADGRPLCCTTHYFP
YGRFAGFAAVYGQLHSVTAAFRALGVADYVRTSTRITSRMPDAAEVRALGLARQTPVLVVESVNADGAGTPVEYGVCVWA
ADRIQFVIDAA

Sequences:

>Translated_251_residues
MTHDTVPVAHRELERGNGVALWRQIQAVLEHDLRSGYVAAGEKLPTERQLAQRFGVNRHTVRQALAELARKELIVVEQGR
GAFARRDKLDYALARRVRFSENLLRQSRIPSERLLGSDKVQAGRRAAEALQVLPATMLLRLRTVGNADGRPLCCTTHYFP
YGRFAGFAAVYGQLHSVTAAFRALGVADYVRTSTRITSRMPDAAEVRALGLARQTPVLVVESVNADGAGTPVEYGVCVWA
ADRIQFVIDAA
>Mature_250_residues
THDTVPVAHRELERGNGVALWRQIQAVLEHDLRSGYVAAGEKLPTERQLAQRFGVNRHTVRQALAELARKELIVVEQGRG
AFARRDKLDYALARRVRFSENLLRQSRIPSERLLGSDKVQAGRRAAEALQVLPATMLLRLRTVGNADGRPLCCTTHYFPY
GRFAGFAAVYGQLHSVTAAFRALGVADYVRTSTRITSRMPDAAEVRALGLARQTPVLVVESVNADGAGTPVEYGVCVWAA
DRIQFVIDAA

Specific function: Belongs To An Operon Involved In Alkylphosphonate Uptake And C-P Lyase. Exact Function Not Known. By Similarity Could Be A Transcriptional Regulator. [C]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790540, Length=234, Percent_Identity=35.042735042735, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI87082252, Length=229, Percent_Identity=23.1441048034935, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1788418, Length=234, Percent_Identity=24.7863247863248, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786950, Length=232, Percent_Identity=24.5689655172414, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1790304, Length=223, Percent_Identity=24.6636771300448, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012702
- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27687; Mature: 27556

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHDTVPVAHRELERGNGVALWRQIQAVLEHDLRSGYVAAGEKLPTERQLAQRFGVNRHT
CCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHCCCHHH
VRQALAELARKELIVVEQGRGAFARRDKLDYALARRVRFSENLLRQSRIPSERLLGSDKV
HHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHH
QAGRRAAEALQVLPATMLLRLRTVGNADGRPLCCTTHYFPYGRFAGFAAVYGQLHSVTAA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
FRALGVADYVRTSTRITSRMPDAAEVRALGLARQTPVLVVESVNADGAGTPVEYGVCVWA
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHCEEEEE
ADRIQFVIDAA
CCCEEEEEECC
>Mature Secondary Structure 
THDTVPVAHRELERGNGVALWRQIQAVLEHDLRSGYVAAGEKLPTERQLAQRFGVNRHT
CCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHCCCHHH
VRQALAELARKELIVVEQGRGAFARRDKLDYALARRVRFSENLLRQSRIPSERLLGSDKV
HHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHH
QAGRRAAEALQVLPATMLLRLRTVGNADGRPLCCTTHYFPYGRFAGFAAVYGQLHSVTAA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
FRALGVADYVRTSTRITSRMPDAAEVRALGLARQTPVLVVESVNADGAGTPVEYGVCVWA
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHCEEEEE
ADRIQFVIDAA
CCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481431; 9889346 [H]