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The map label for this gene is csrA

Identifier: 78358190

GI number: 78358190

Start: 3136122

End: 3136358

Strand: Reverse

Name: csrA

Synonym: Dde_3150

Alternate gene names: 78358190

Gene position: 3136358-3136122 (Counterclockwise)

Preceding gene: 78358191

Following gene: 78358189

Centisome position: 84.08

GC content: 54.43

Gene sequence:

>237_bases
ATGCTTATATTGACGCGCCGTCCGGGAGAGAGCCTGTACCTGGGCGATACCATCAAGATCACTGTCCTGAGTGTGCAGGG
CAAGCAGATCAAGATAGGTCTCGATGTGCCCGGAGACATGACCGTGTACCGGGAAGAGGTATACATGCGCGTTCGTGACC
AGAACCGTCAGGCACTTGAAACCAGCGATGCGGACCTGCTCGCAGCGACTCAATTATGGCACGCGAAAAAGAAATAG

Upstream 100 bases:

>100_bases
CACGCCTTGCGCAGCAGCAGCTCATCTATAACAGCGTGCTCAAGTCGTCCTCCATGATCATGCAGATGAACCTGACCAAT
TACCTGTAAACGAGCAGCGT

Downstream 100 bases:

>100_bases
AAATCCAGACTCGTCTCGGAAAGCAGCGCATCCTGCCCAGCAAGGTGATCTATTTTCCGCGCGGTATCATGGGCTTTGAA
AATCAGCACGAATTCACGCT

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 78; Mature: 78

Protein sequence:

>78_residues
MLILTRRPGESLYLGDTIKITVLSVQGKQIKIGLDVPGDMTVYREEVYMRVRDQNRQALETSDADLLAATQLWHAKKK

Sequences:

>Translated_78_residues
MLILTRRPGESLYLGDTIKITVLSVQGKQIKIGLDVPGDMTVYREEVYMRVRDQNRQALETSDADLLAATQLWHAKKK
>Mature_78_residues
MLILTRRPGESLYLGDTIKITVLSVQGKQIKIGLDVPGDMTVYREEVYMRVRDQNRQALETSDADLLAATQLWHAKKK

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family

Homologues:

Organism=Escherichia coli, GI1789047, Length=57, Percent_Identity=49.1228070175439, Blast_Score=68, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSRA_DESDG (Q30WK2)

Other databases:

- EMBL:   CP000112
- RefSeq:   YP_389639.1
- ProteinModelPortal:   Q30WK2
- SMR:   Q30WK2
- STRING:   Q30WK2
- GeneID:   3758125
- GenomeReviews:   CP000112_GR
- KEGG:   dde:Dde_3150
- NMPDR:   fig|207559.3.peg.3739
- eggNOG:   COG1551
- HOGENOM:   HBG724655
- OMA:   RIGINAP
- ProtClustDB:   CLSK704676
- BioCyc:   DDES207559:DDE_3150-MONOMER
- HAMAP:   MF_00167
- InterPro:   IPR003751
- ProDom:   PD009007
- TIGRFAMs:   TIGR00202

Pfam domain/function: PF02599 CsrA

EC number: NA

Molecular weight: Translated: 8887; Mature: 8887

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILTRRPGESLYLGDTIKITVLSVQGKQIKIGLDVPGDMTVYREEVYMRVRDQNRQALE
CEEEECCCCCEEEECCEEEEEEEEECCCEEEEEECCCCCCEEEEEEEEEEECCCCCCEEC
TSDADLLAATQLWHAKKK
CCCCCEEEHHHHHHCCCC
>Mature Secondary Structure
MLILTRRPGESLYLGDTIKITVLSVQGKQIKIGLDVPGDMTVYREEVYMRVRDQNRQALE
CEEEECCCCCEEEECCEEEEEEEEECCCEEEEEECCCCCCEEEEEEEEEEECCCCCCEEC
TSDADLLAATQLWHAKKK
CCCCCEEEHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA