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The map label for this gene is lpsD [H]

Identifier: 78355885

GI number: 78355885

Start: 865421

End: 866680

Strand: Direct

Name: lpsD [H]

Synonym: Dde_0838

Alternate gene names: 78355885

Gene position: 865421-866680 (Clockwise)

Preceding gene: 78355884

Following gene: 78355886

Centisome position: 23.2

GC content: 62.06

Gene sequence:

>1260_bases
ATGAGCGCCGCTTCACCGTCATCTGCATGCATTTTACCCGAAAAAGGCCCCGTCACCGTGGCACATTGCATAGCGAGCAA
TTTTTACGGGGGGCCGGAACGGCAGGTGCTTACCCATCTGGAGCATCTGCAGCGTTCAGGGGTGCGTCCGCTGCTCATTC
CTTTTTTTGAAGAAGGCAGGCGTAACGAGCTGTATCTGCATGCACAGGAGCGGGGTATTCCCGTGGCGCCGCTGAGACGG
CAGGGAGCGTTTAATCCGCTGCTCATCGGGGAACTGGCGGGGGTGCTGCACCGTGAACAGGTGCATCTGCTTGTCACGCA
CGGATACAAAGCCAATGTTGTGGGCAGACTGGCATCGTGGTTTATGCGTGTGCCGGAGGTGGCCGTATCACGCGGCTGGA
CCGGCGAGTGCCCGCGAGTGCGGTTGTATGAGCGTCTGGACAGGCTTTTTCTGCGGTTTGCCAGACATGTGGTGGCGGTT
TCCGCCGGACAGCGCGCCAAAGTTGTCGAAGCCGGCGTGCCGGCTGCCAGGGTAAGCGTCATTCACAACGCCATTGATCT
GGAGACGTACCCTCCTTCTGCGGGGGTGCTGCGCCCGCTGCTGGGCATACCGGATACGGCGGAGGTGGTCATCACCGCGG
GCAGGCTGTCGCCGGAAAAGAATCACGCCGGAATGATACGTGCGGCGGCCATGGTTCTCGAGCGGCATCCTGATGTGTAT
TTTGCCGTTTTCGGCGAGGGGGCGCTGCGCAGCCGGTTGGAGCGGCAGATAGAGGAAGCCGGACTGCAGAACCGTTTTTT
TCTTCCCGGATTCCGTAAGGACATGCGCGGCATCATGCACGAATGCGATATTTTTGTTCTGCCCAGTTTTACCGAGGGCC
TGCCCAATGTGGCGCTGGAGGCAGCTGCCTGCCGCAGGCCCGTGGTCTGCACGCGCGCCGGAGGTTCGCCCGAGGTGGTG
CGCCACGGGCACACGGGGCTGGTGACGGAACCGGGTGACGATGCCGCACTGGCCGCCGCCGTCGGCTCTCTGCTGGATGA
TCCCGCCCTGCGCAGAACCATGGGCGAAAATGCCTATTCGTTCATCAGCCGGTCATTTTCCTATGCGGGGCAGACAGAAC
AGTATCTGAATCTTTACAGGCGGATAACGCCGATGCCCTGTGCCGTTACCCCGCAGCATTGTGCGTGGTCGGACGGCCGC
GGCGGTGCCGTGTCCGGCCAGGAACAGCAGCAGCCCGTGCGGCGGCAGGAGGACGCGTAA

Upstream 100 bases:

>100_bases
GGACGCTGTATCTGCCGGTGGTGGTGTACGAGCTTGTTTATGCCACTGTCAGAGGCCTTCTGGGCATCAACCGCACTGTA
TGGCAAAGGACAAAACGCGT

Downstream 100 bases:

>100_bases
TGTCTTTTGCCGCAGTGCGCGGACTGTTGGCGCGGCGCGGAAAGGCTTCTCCGGCCACAGCTGAACAACAGGCCCCGGGT
GAACAACAGGCCGCCGGTGA

Product: glycosyl transferase, group 1 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 418

Protein sequence:

>419_residues
MSAASPSSACILPEKGPVTVAHCIASNFYGGPERQVLTHLEHLQRSGVRPLLIPFFEEGRRNELYLHAQERGIPVAPLRR
QGAFNPLLIGELAGVLHREQVHLLVTHGYKANVVGRLASWFMRVPEVAVSRGWTGECPRVRLYERLDRLFLRFARHVVAV
SAGQRAKVVEAGVPAARVSVIHNAIDLETYPPSAGVLRPLLGIPDTAEVVITAGRLSPEKNHAGMIRAAAMVLERHPDVY
FAVFGEGALRSRLERQIEEAGLQNRFFLPGFRKDMRGIMHECDIFVLPSFTEGLPNVALEAAACRRPVVCTRAGGSPEVV
RHGHTGLVTEPGDDAALAAAVGSLLDDPALRRTMGENAYSFISRSFSYAGQTEQYLNLYRRITPMPCAVTPQHCAWSDGR
GGAVSGQEQQQPVRRQEDA

Sequences:

>Translated_419_residues
MSAASPSSACILPEKGPVTVAHCIASNFYGGPERQVLTHLEHLQRSGVRPLLIPFFEEGRRNELYLHAQERGIPVAPLRR
QGAFNPLLIGELAGVLHREQVHLLVTHGYKANVVGRLASWFMRVPEVAVSRGWTGECPRVRLYERLDRLFLRFARHVVAV
SAGQRAKVVEAGVPAARVSVIHNAIDLETYPPSAGVLRPLLGIPDTAEVVITAGRLSPEKNHAGMIRAAAMVLERHPDVY
FAVFGEGALRSRLERQIEEAGLQNRFFLPGFRKDMRGIMHECDIFVLPSFTEGLPNVALEAAACRRPVVCTRAGGSPEVV
RHGHTGLVTEPGDDAALAAAVGSLLDDPALRRTMGENAYSFISRSFSYAGQTEQYLNLYRRITPMPCAVTPQHCAWSDGR
GGAVSGQEQQQPVRRQEDA
>Mature_418_residues
SAASPSSACILPEKGPVTVAHCIASNFYGGPERQVLTHLEHLQRSGVRPLLIPFFEEGRRNELYLHAQERGIPVAPLRRQ
GAFNPLLIGELAGVLHREQVHLLVTHGYKANVVGRLASWFMRVPEVAVSRGWTGECPRVRLYERLDRLFLRFARHVVAVS
AGQRAKVVEAGVPAARVSVIHNAIDLETYPPSAGVLRPLLGIPDTAEVVITAGRLSPEKNHAGMIRAAAMVLERHPDVYF
AVFGEGALRSRLERQIEEAGLQNRFFLPGFRKDMRGIMHECDIFVLPSFTEGLPNVALEAAACRRPVVCTRAGGSPEVVR
HGHTGLVTEPGDDAALAAAVGSLLDDPALRRTMGENAYSFISRSFSYAGQTEQYLNLYRRITPMPCAVTPQHCAWSDGRG
GAVSGQEQQQPVRRQEDA

Specific function: Slime polysaccharide colanic acid biosynthesis. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

Organism=Homo sapiens, GI11863130, Length=245, Percent_Identity=25.7142857142857, Blast_Score=66, Evalue=6e-11,
Organism=Escherichia coli, GI1788357, Length=175, Percent_Identity=27.4285714285714, Blast_Score=68, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17532709, Length=373, Percent_Identity=25.4691689008043, Blast_Score=70, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI9755344, Length=307, Percent_Identity=24.7557003257329, Blast_Score=73, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 45932; Mature: 45801

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAASPSSACILPEKGPVTVAHCIASNFYGGPERQVLTHLEHLQRSGVRPLLIPFFEEGR
CCCCCCCCEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEHHHCCCC
RNELYLHAQERGIPVAPLRRQGAFNPLLIGELAGVLHREQVHLLVTHGYKANVVGRLASW
CCEEEEEECCCCCCCCCHHHCCCCCCCHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHH
FMRVPEVAVSRGWTGECPRVRLYERLDRLFLRFARHVVAVSAGQRAKVVEAGVPAARVSV
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHH
IHNAIDLETYPPSAGVLRPLLGIPDTAEVVITAGRLSPEKNHAGMIRAAAMVLERHPDVY
HHHHHCCCCCCCCCHHHHHHHCCCCCHHEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEE
FAVFGEGALRSRLERQIEEAGLQNRFFLPGFRKDMRGIMHECDIFVLPSFTEGLPNVALE
EEEECCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHCCEEEECCHHCCCCHHHHH
AAACRRPVVCTRAGGSPEVVRHGHTGLVTEPGDDAALAAAVGSLLDDPALRRTMGENAYS
HHHCCCCEEEEECCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCHHHH
FISRSFSYAGQTEQYLNLYRRITPMPCAVTPQHCAWSDGRGGAVSGQEQQQPVRRQEDA
HHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
SAASPSSACILPEKGPVTVAHCIASNFYGGPERQVLTHLEHLQRSGVRPLLIPFFEEGR
CCCCCCCEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEHHHCCCC
RNELYLHAQERGIPVAPLRRQGAFNPLLIGELAGVLHREQVHLLVTHGYKANVVGRLASW
CCEEEEEECCCCCCCCCHHHCCCCCCCHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHH
FMRVPEVAVSRGWTGECPRVRLYERLDRLFLRFARHVVAVSAGQRAKVVEAGVPAARVSV
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHH
IHNAIDLETYPPSAGVLRPLLGIPDTAEVVITAGRLSPEKNHAGMIRAAAMVLERHPDVY
HHHHHCCCCCCCCCHHHHHHHCCCCCHHEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEE
FAVFGEGALRSRLERQIEEAGLQNRFFLPGFRKDMRGIMHECDIFVLPSFTEGLPNVALE
EEEECCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHCCEEEECCHHCCCCHHHHH
AAACRRPVVCTRAGGSPEVVRHGHTGLVTEPGDDAALAAAVGSLLDDPALRRTMGENAYS
HHHCCCCEEEEECCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCHHHH
FISRSFSYAGQTEQYLNLYRRITPMPCAVTPQHCAWSDGRGGAVSGQEQQQPVRRQEDA
HHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11157937; 11481430 [H]