Click here to switch to the map view.

The map label for this gene is 78355588

Identifier: 78355588

GI number: 78355588

Start: 552770

End: 554158

Strand: Direct

Name: 78355588

Synonym: Dde_0541

Alternate gene names: NA

Gene position: 552770-554158 (Clockwise)

Preceding gene: 78355587

Following gene: 78355589

Centisome position: 14.82

GC content: 65.01

Gene sequence:

>1389_bases
ATGGGACTAGCCTTCAGGCTTGCCATACTCGGCCTGCTGATTCTGACGGCAGGCGGGTGCGCCGTTATGCGCCCGCCTGC
CTCTTTCCGGCCGCCGGAGCGTGAAGAACAGCTTTTCACCGCCCTTCAGGCTCCTGTTTCTCCTGCCGCTTTTGCTCAGG
CGGCGCTCTCATACGATTACATTCTGCTGGGCGAGGGGCACACCTCGGCCTGCGACCATCTGATGCAGGCCCGAATGCTG
CAGGCTCTGGCTGCTGCAGGCATGCGTCCCGCCGTGGGGCTGGAGATGGTGCCCGCGGAAAAACAGCCCGTGCTGGACAG
GTTCGGGCCTTTTGCCGTTGCTGCGGATACCGCCCTGCAACAGCGGCTGGATGCGGATACACTGGAAGAGGCCGTGGACT
GGAAAACCGTGTGGGGATACCCCTACGATCTGTACAGACCGGTTTTTGAAGCGGCATATGCCGGCGGGCTGCCGCTTTTC
GGGCTTAATGTGCCGCGTGAGGTGGTGCGCAAGGTGAGCCGCGGCGGTATTGAATCACTGACAGACGACGAACGCAGCCT
GCTGCCGTCAAAGATTATTTTTCCCTCCGACGAGCAGCGCGAGGCGCTGACCCGTATGTTCCGCAAACATGACTCCATGC
GCAGGGCGCGCCATAACTCCACGGCGGAACAGACCGGCATGCCGGATACGCCTGCCGCGCCGGAACGCAGGCCTTCCACA
GACACTGCCGCTGCAGACACGGCCGCTGTGCCGGGCGGCAATGCCACCGCCCGCACCGCTCCCGGCTCTGCCGGAATTTC
AGCAGTCGAGGCCGGTGCCGCTGCCGCTGACGGTGAACACGGTACCCGTGAACGCTTTTTTCTTGTCCAGTCACTGTGGG
ATACGGCCATGGCCGAAAACGCCATGCGGGCGCGTCGCCGCCACGGAGGGCCCGTGGTCGTGCTGGCGGGCAGCGGGCAC
GTGGAACGCGGCTGGGGTCTGGCCCGCAGGCTGGGCATCCTTGACCGCGGGGCACGCGTGCTGCTGGTCATGCCGTGGCG
TGCCGAAGGTCCCCCCGACCCCGAAGACGGCGATTACTTTTTCTATTGCCGTGCCAGCCACCGAAGCCGTATGGGCTTTA
CGCTGGTCATGGCTGAAGGACGGGTGACGGTACAGGACGTGGCGGAGGATTCCCCCGCCCGGCGTGCCGGATTCCGCGCC
GGCGATGTGCTGCGTTCTGCCGACGGGGCGCAGGTGAATTCGCTGTGGGATATGCACAAGGCCGGTATGCAGGCGGCGCG
TGAAAAGCGTCCTGTGGTTTTCGGCGTGCAGCGCGACGGAGCCATGCTGTCGCTGGAACTGTCTGTGCAGCACGAAGACG
GGGCGCAGGAGGACACGGACAGGCGGTGA

Upstream 100 bases:

>100_bases
TGCACGCGTTCCGCGAGCGCATCAAACTGCGGCCCGAGCTCAAGGTGCTTGCACCCGGTTCGCTGCCTCCGCAGATCCGT
CCCATCGAGGACAAGAGAGT

Downstream 100 bases:

>100_bases
TGTCCGGCAGGTATCTGGTGCCTGCTGCATGCCGTCCATACCGTCCATACCCCCATGCCGTCCGTTGTCTTCCGGATTTT
TCCGGCCCGCTGCGGCGTTC

Product: hypothetical protein

Products: NA

Alternate protein names: PDZ Domain-Containing Protein

Number of amino acids: Translated: 462; Mature: 461

Protein sequence:

>462_residues
MGLAFRLAILGLLILTAGGCAVMRPPASFRPPEREEQLFTALQAPVSPAAFAQAALSYDYILLGEGHTSACDHLMQARML
QALAAAGMRPAVGLEMVPAEKQPVLDRFGPFAVAADTALQQRLDADTLEEAVDWKTVWGYPYDLYRPVFEAAYAGGLPLF
GLNVPREVVRKVSRGGIESLTDDERSLLPSKIIFPSDEQREALTRMFRKHDSMRRARHNSTAEQTGMPDTPAAPERRPST
DTAAADTAAVPGGNATARTAPGSAGISAVEAGAAAADGEHGTRERFFLVQSLWDTAMAENAMRARRRHGGPVVVLAGSGH
VERGWGLARRLGILDRGARVLLVMPWRAEGPPDPEDGDYFFYCRASHRSRMGFTLVMAEGRVTVQDVAEDSPARRAGFRA
GDVLRSADGAQVNSLWDMHKAGMQAAREKRPVVFGVQRDGAMLSLELSVQHEDGAQEDTDRR

Sequences:

>Translated_462_residues
MGLAFRLAILGLLILTAGGCAVMRPPASFRPPEREEQLFTALQAPVSPAAFAQAALSYDYILLGEGHTSACDHLMQARML
QALAAAGMRPAVGLEMVPAEKQPVLDRFGPFAVAADTALQQRLDADTLEEAVDWKTVWGYPYDLYRPVFEAAYAGGLPLF
GLNVPREVVRKVSRGGIESLTDDERSLLPSKIIFPSDEQREALTRMFRKHDSMRRARHNSTAEQTGMPDTPAAPERRPST
DTAAADTAAVPGGNATARTAPGSAGISAVEAGAAAADGEHGTRERFFLVQSLWDTAMAENAMRARRRHGGPVVVLAGSGH
VERGWGLARRLGILDRGARVLLVMPWRAEGPPDPEDGDYFFYCRASHRSRMGFTLVMAEGRVTVQDVAEDSPARRAGFRA
GDVLRSADGAQVNSLWDMHKAGMQAAREKRPVVFGVQRDGAMLSLELSVQHEDGAQEDTDRR
>Mature_461_residues
GLAFRLAILGLLILTAGGCAVMRPPASFRPPEREEQLFTALQAPVSPAAFAQAALSYDYILLGEGHTSACDHLMQARMLQ
ALAAAGMRPAVGLEMVPAEKQPVLDRFGPFAVAADTALQQRLDADTLEEAVDWKTVWGYPYDLYRPVFEAAYAGGLPLFG
LNVPREVVRKVSRGGIESLTDDERSLLPSKIIFPSDEQREALTRMFRKHDSMRRARHNSTAEQTGMPDTPAAPERRPSTD
TAAADTAAVPGGNATARTAPGSAGISAVEAGAAAADGEHGTRERFFLVQSLWDTAMAENAMRARRRHGGPVVVLAGSGHV
ERGWGLARRLGILDRGARVLLVMPWRAEGPPDPEDGDYFFYCRASHRSRMGFTLVMAEGRVTVQDVAEDSPARRAGFRAG
DVLRSADGAQVNSLWDMHKAGMQAAREKRPVVFGVQRDGAMLSLELSVQHEDGAQEDTDRR

Specific function: Unknown

COG id: COG3016

COG function: function code S; Uncharacterized iron-regulated protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50069; Mature: 49938

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50106 PDZ ; PS00290 IG_MHC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLAFRLAILGLLILTAGGCAVMRPPASFRPPEREEQLFTALQAPVSPAAFAQAALSYDY
CCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCE
ILLGEGHTSACDHLMQARMLQALAAAGMRPAVGLEMVPAEKQPVLDRFGPFAVAADTALQ
EEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCHHHHCCCHHHHHHHHHH
QRLDADTLEEAVDWKTVWGYPYDLYRPVFEAAYAGGLPLFGLNVPREVVRKVSRGGIESL
HHCCHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHCCCCCC
TDDERSLLPSKIIFPSDEQREALTRMFRKHDSMRRARHNSTAEQTGMPDTPAAPERRPST
CCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCC
DTAAADTAAVPGGNATARTAPGSAGISAVEAGAAAADGEHGTRERFFLVQSLWDTAMAEN
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
AMRARRRHGGPVVVLAGSGHVERGWGLARRLGILDRGARVLLVMPWRAEGPPDPEDGDYF
HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEE
FYCRASHRSRMGFTLVMAEGRVTVQDVAEDSPARRAGFRAGDVLRSADGAQVNSLWDMHK
EEEECCCCCCCCEEEEEECCCEEHHHHHCCCCHHHHCCCHHHHHHCCCCCHHHHHHHHHH
AGMQAAREKRPVVFGVQRDGAMLSLELSVQHEDGAQEDTDRR
HHHHHHHHCCCEEEEEECCCEEEEEEEEEECCCCCCCCCCCC
>Mature Secondary Structure 
GLAFRLAILGLLILTAGGCAVMRPPASFRPPEREEQLFTALQAPVSPAAFAQAALSYDY
CHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCE
ILLGEGHTSACDHLMQARMLQALAAAGMRPAVGLEMVPAEKQPVLDRFGPFAVAADTALQ
EEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCHHHHCCCHHHHHHHHHH
QRLDADTLEEAVDWKTVWGYPYDLYRPVFEAAYAGGLPLFGLNVPREVVRKVSRGGIESL
HHCCHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHCCCCCC
TDDERSLLPSKIIFPSDEQREALTRMFRKHDSMRRARHNSTAEQTGMPDTPAAPERRPST
CCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCC
DTAAADTAAVPGGNATARTAPGSAGISAVEAGAAAADGEHGTRERFFLVQSLWDTAMAEN
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
AMRARRRHGGPVVVLAGSGHVERGWGLARRLGILDRGARVLLVMPWRAEGPPDPEDGDYF
HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEE
FYCRASHRSRMGFTLVMAEGRVTVQDVAEDSPARRAGFRAGDVLRSADGAQVNSLWDMHK
EEEECCCCCCCCEEEEEECCCEEHHHHHCCCCHHHHCCCHHHHHHCCCCCHHHHHHHHHH
AGMQAAREKRPVVFGVQRDGAMLSLELSVQHEDGAQEDTDRR
HHHHHHHHCCCEEEEEECCCEEEEEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA