Click here to switch to the map view.

The map label for this gene is rlpA [C]

Identifier: 78355578

GI number: 78355578

Start: 537415

End: 538527

Strand: Direct

Name: rlpA [C]

Synonym: Dde_0531

Alternate gene names: 78355578

Gene position: 537415-538527 (Clockwise)

Preceding gene: 78355576

Following gene: 78355579

Centisome position: 14.41

GC content: 59.66

Gene sequence:

>1113_bases
TTGCGCATAAGGGGATGCCGTTCCGCGGCCGTGCTGGCTGCTGCGGCGTTGTTGTGGATGCTGGCCGCTGCGGGGCATGC
TGAAACTGTAAAAACCCCTCCCCGGCTGCTGGAAGGAATGGCTTCGTGGTACGGCGAATTTTTTCAGGGCCGTCCCACAG
CCAGCGGCGAACCCTTTGACATGAATGCGCTTACTGCGGCGCATATGACTCTGCCGCTGGGCAGCATCGTGCGGGTGGTC
AATCTGGAAAACGGAAAAACCGTCATCGTGCGTATCAATGACCGTGGACCGTTTAAAAAGCAGTATGTCATTGACCTGTC
CCGTCAGGCCGCCGTGCGGCTGGATATGCTGCAGAAAGGAACAGCCAGGGTGCGCATAGAACCGCTGGATCGTAATGTCA
TTGACGGTGAGGCACCGCAGGCTGTTGTTCCTGCCGCCATTCGCAGAACTGCGCAGCGCAACGCCACGGGTGATGAGCAG
AAGGCGGTATCGCAGGCCGGAACCGCACCGGCTGGTGGTCAGACCGGTACGGCGCAGCCCGCTGCCGGACAGCATGATTC
TGCTGAGACAGCTGCTGCCGCTGGTGCAACACAGGCCGGTATGACCGCTGCGGTTTCACAGGGCCGGGCGGACAGTTCTG
TTGCCGCCCCCATCGCAGAGCGGGACGGCGTGGCTTCTCCGGACCATGCGCCGCAGGGCGGCAGCCATGCAAAAGAGCCG
GTGAAGGAACAGCAGCCACAACCGGCAGCTAACAGTACCCGTCAGGCGCTGGCTGTGGCGGCTGCCATAACCGGCGCAGA
TCATGACAAAGCGGCGCACAAGACGGTACTGCCGGAAGAGAGCGGCGTACGAGACGGAAATTATGTGAAAAAACTGCCAT
CCGGCGTGTATGTGCAGGCCGGTGCATTCAGCAGACGCGAAAATGCGCGTAATTTCGCGCAACAGCTTGAAAAAGAAGGA
TTCGGACCGGTGTTGTGGAGTGCCAAAAACAGTGCCGGAAGCCTGTGGCTGGTGGTTGCGGGGCCGTTTGCAGATAAGGC
GCAAGCCTATAACAGACTTGCAGCATTGCGAAATGCGGGTCACAATGGCTACTTGAAAGTGGTTGCTCCATAA

Upstream 100 bases:

>100_bases
CCTGCACGGCTGCGTGACGCAGGAGTGAAGGTGAGACATAACATTGGACGCCTTGCAGGCGTATACAGGATAAGATCAGG
TGGAGTCGATGACTTTTTCA

Downstream 100 bases:

>100_bases
GGCGGTTACGCCGCGGCGGTGGGGTGTGTAACTGTACGGATGCAATGATCCGGAACTTTCGCCGGCCGGTCAGCAGGCCG
GCAATATCGCTTTTTTGTTC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MRIRGCRSAAVLAAAALLWMLAAAGHAETVKTPPRLLEGMASWYGEFFQGRPTASGEPFDMNALTAAHMTLPLGSIVRVV
NLENGKTVIVRINDRGPFKKQYVIDLSRQAAVRLDMLQKGTARVRIEPLDRNVIDGEAPQAVVPAAIRRTAQRNATGDEQ
KAVSQAGTAPAGGQTGTAQPAAGQHDSAETAAAAGATQAGMTAAVSQGRADSSVAAPIAERDGVASPDHAPQGGSHAKEP
VKEQQPQPAANSTRQALAVAAAITGADHDKAAHKTVLPEESGVRDGNYVKKLPSGVYVQAGAFSRRENARNFAQQLEKEG
FGPVLWSAKNSAGSLWLVVAGPFADKAQAYNRLAALRNAGHNGYLKVVAP

Sequences:

>Translated_370_residues
MRIRGCRSAAVLAAAALLWMLAAAGHAETVKTPPRLLEGMASWYGEFFQGRPTASGEPFDMNALTAAHMTLPLGSIVRVV
NLENGKTVIVRINDRGPFKKQYVIDLSRQAAVRLDMLQKGTARVRIEPLDRNVIDGEAPQAVVPAAIRRTAQRNATGDEQ
KAVSQAGTAPAGGQTGTAQPAAGQHDSAETAAAAGATQAGMTAAVSQGRADSSVAAPIAERDGVASPDHAPQGGSHAKEP
VKEQQPQPAANSTRQALAVAAAITGADHDKAAHKTVLPEESGVRDGNYVKKLPSGVYVQAGAFSRRENARNFAQQLEKEG
FGPVLWSAKNSAGSLWLVVAGPFADKAQAYNRLAALRNAGHNGYLKVVAP
>Mature_370_residues
MRIRGCRSAAVLAAAALLWMLAAAGHAETVKTPPRLLEGMASWYGEFFQGRPTASGEPFDMNALTAAHMTLPLGSIVRVV
NLENGKTVIVRINDRGPFKKQYVIDLSRQAAVRLDMLQKGTARVRIEPLDRNVIDGEAPQAVVPAAIRRTAQRNATGDEQ
KAVSQAGTAPAGGQTGTAQPAAGQHDSAETAAAAGATQAGMTAAVSQGRADSSVAAPIAERDGVASPDHAPQGGSHAKEP
VKEQQPQPAANSTRQALAVAAAITGADHDKAAHKTVLPEESGVRDGNYVKKLPSGVYVQAGAFSRRENARNFAQQLEKEG
FGPVLWSAKNSAGSLWLVVAGPFADKAQAYNRLAALRNAGHNGYLKVVAP

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=103, Percent_Identity=46.6019417475728, Blast_Score=88, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 38651; Mature: 38651

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIRGCRSAAVLAAAALLWMLAAAGHAETVKTPPRLLEGMASWYGEFFQGRPTASGEPFD
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
MNALTAAHMTLPLGSIVRVVNLENGKTVIVRINDRGPFKKQYVIDLSRQAAVRLDMLQKG
CHHHHHHHHHCCHHHHEEEEEECCCCEEEEEECCCCCCCHHHEEECCHHHHHHHHHHHCC
TARVRIEPLDRNVIDGEAPQAVVPAAIRRTAQRNATGDEQKAVSQAGTAPAGGQTGTAQP
CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCC
AAGQHDSAETAAAAGATQAGMTAAVSQGRADSSVAAPIAERDGVASPDHAPQGGSHAKEP
CCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCHHHCCCHHCCCCCCCCCCCCCCCCCCCC
VKEQQPQPAANSTRQALAVAAAITGADHDKAAHKTVLPEESGVRDGNYVKKLPSGVYVQA
HHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCHHHHHCCCCEEEEC
GAFSRRENARNFAQQLEKEGFGPVLWSAKNSAGSLWLVVAGPFADKAQAYNRLAALRNAG
CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCC
HNGYLKVVAP
CCCEEEEECC
>Mature Secondary Structure
MRIRGCRSAAVLAAAALLWMLAAAGHAETVKTPPRLLEGMASWYGEFFQGRPTASGEPFD
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
MNALTAAHMTLPLGSIVRVVNLENGKTVIVRINDRGPFKKQYVIDLSRQAAVRLDMLQKG
CHHHHHHHHHCCHHHHEEEEEECCCCEEEEEECCCCCCCHHHEEECCHHHHHHHHHHHCC
TARVRIEPLDRNVIDGEAPQAVVPAAIRRTAQRNATGDEQKAVSQAGTAPAGGQTGTAQP
CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCC
AAGQHDSAETAAAAGATQAGMTAAVSQGRADSSVAAPIAERDGVASPDHAPQGGSHAKEP
CCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCHHHCCCHHCCCCCCCCCCCCCCCCCCCC
VKEQQPQPAANSTRQALAVAAAITGADHDKAAHKTVLPEESGVRDGNYVKKLPSGVYVQA
HHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCHHHHHCCCCEEEEC
GAFSRRENARNFAQQLEKEGFGPVLWSAKNSAGSLWLVVAGPFADKAQAYNRLAALRNAG
CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCC
HNGYLKVVAP
CCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]