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The map label for this gene is ysaA [H]

Identifier: 78355521

GI number: 78355521

Start: 484411

End: 485016

Strand: Direct

Name: ysaA [H]

Synonym: Dde_0474

Alternate gene names: 78355521

Gene position: 484411-485016 (Clockwise)

Preceding gene: 78355520

Following gene: 78355522

Centisome position: 12.99

GC content: 65.51

Gene sequence:

>606_bases
ATGCAATCCCAGTTGAGTGATTTTGTGGTGGCAGATGCTTCGCGCTGCATAGGCTGCCGTGTGTGCGAGGTGGCCTGCGC
CGTGGCGCACACCGCTACAGGCAAGGAACACCCCGTGGCCGGCAATCTGGACAGCCCGTTGCTTCCCCGTCTGTATCTGG
TGCGCACGCCGCTGGCCACAGCCCCTGTGCAGTGCCGTCACTGCGAGGATGCCCCCTGCGCTGCAAGCTGCCCCGCAGGT
GCCATCAGACGTAAGGACGGCGCACTGGTGGTGGAAGAGGCCCGCTGTGTGGGCTGCAAGACCTGTATGCTGGCCTGCCC
GTTCGGCGCCGTGGAACTGGTGCCTGTATACGCGCAGGGTCGTGCCGTCATGCAGACCGTGCAGACAGAGGACGGGGGTG
TATGCACGGTTTCTCCGGTCATGGTGGCCGTCAAATGCGATATGTGCACCGGCAGGCAGGCAGGACCGGCGTGTGTGCAG
GCCTGCCCCCGCGGCGCTTTGCGCATGGCCGCGGTGAGTGATCTGCGCCGCAGACGCTGCGCGCAGGCTGCGGCCGGACT
GGCAAAATACGTGACGGCATTGCATCCGGAGGACGGAAGGTCATGA

Upstream 100 bases:

>100_bases
GCCCCTGTCCGGCGGATACCGCCGGACGGCGGCCGGAGGCGGCTGCTCAGAAACACTATTCCGAACCGGCGGTGCATCCT
GCCGGAACACCGGAGAAAAT

Downstream 100 bases:

>100_bases
ATGGACAGCAGAATGTGATACGCATTGACAGCGATATATGCACGGGCTGCGGCCGGTGCAAAGATGTCTGCCCCGTGGGG
GCGGTGGAAGGGGTGCAGGG

Product: electron transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MQSQLSDFVVADASRCIGCRVCEVACAVAHTATGKEHPVAGNLDSPLLPRLYLVRTPLATAPVQCRHCEDAPCAASCPAG
AIRRKDGALVVEEARCVGCKTCMLACPFGAVELVPVYAQGRAVMQTVQTEDGGVCTVSPVMVAVKCDMCTGRQAGPACVQ
ACPRGALRMAAVSDLRRRRCAQAAAGLAKYVTALHPEDGRS

Sequences:

>Translated_201_residues
MQSQLSDFVVADASRCIGCRVCEVACAVAHTATGKEHPVAGNLDSPLLPRLYLVRTPLATAPVQCRHCEDAPCAASCPAG
AIRRKDGALVVEEARCVGCKTCMLACPFGAVELVPVYAQGRAVMQTVQTEDGGVCTVSPVMVAVKCDMCTGRQAGPACVQ
ACPRGALRMAAVSDLRRRRCAQAAAGLAKYVTALHPEDGRS
>Mature_201_residues
MQSQLSDFVVADASRCIGCRVCEVACAVAHTATGKEHPVAGNLDSPLLPRLYLVRTPLATAPVQCRHCEDAPCAASCPAG
AIRRKDGALVVEEARCVGCKTCMLACPFGAVELVPVYAQGRAVMQTVQTEDGGVCTVSPVMVAVKCDMCTGRQAGPACVQ
ACPRGALRMAAVSDLRRRRCAQAAAGLAKYVTALHPEDGRS

Specific function: Unknown

COG id: COG1142

COG function: function code C; Fe-S-cluster-containing hydrogenase components 2

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI2367245, Length=178, Percent_Identity=41.5730337078652, Blast_Score=141, Evalue=3e-35,
Organism=Escherichia coli, GI1789067, Length=183, Percent_Identity=40.4371584699454, Blast_Score=133, Evalue=7e-33,
Organism=Escherichia coli, GI1789079, Length=184, Percent_Identity=38.0434782608696, Blast_Score=124, Evalue=4e-30,
Organism=Escherichia coli, GI1788811, Length=185, Percent_Identity=36.2162162162162, Blast_Score=123, Evalue=9e-30,
Organism=Escherichia coli, GI87082114, Length=189, Percent_Identity=38.0952380952381, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI87082179, Length=175, Percent_Identity=36, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI87082180, Length=188, Percent_Identity=35.6382978723404, Blast_Score=115, Evalue=1e-27,
Organism=Escherichia coli, GI1787122, Length=193, Percent_Identity=32.1243523316062, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787872, Length=193, Percent_Identity=31.0880829015544, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI226510944, Length=168, Percent_Identity=32.1428571428571, Blast_Score=71, Evalue=4e-14,
Organism=Escherichia coli, GI1787749, Length=220, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI2367345, Length=182, Percent_Identity=32.967032967033, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 20988; Mature: 20988

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
11.9 %Cys+Met (Translated Protein)
9.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
11.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSQLSDFVVADASRCIGCRVCEVACAVAHTATGKEHPVAGNLDSPLLPRLYLVRTPLAT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
APVQCRHCEDAPCAASCPAGAIRRKDGALVVEEARCVGCKTCMLACPFGAVELVPVYAQG
CCCCCCCCCCCCCCCCCCCCCEECCCCCEEEECCHHHHHHHHHHCCCCCCEEEEEEHHCC
RAVMQTVQTEDGGVCTVSPVMVAVKCDMCTGRQAGPACVQACPRGALRMAAVSDLRRRRC
HHHHHHHHCCCCCEEEECCEEEEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHH
AQAAAGLAKYVTALHPEDGRS
HHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MQSQLSDFVVADASRCIGCRVCEVACAVAHTATGKEHPVAGNLDSPLLPRLYLVRTPLAT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
APVQCRHCEDAPCAASCPAGAIRRKDGALVVEEARCVGCKTCMLACPFGAVELVPVYAQG
CCCCCCCCCCCCCCCCCCCCCEECCCCCEEEECCHHHHHHHHHHCCCCCCEEEEEEHHCC
RAVMQTVQTEDGGVCTVSPVMVAVKCDMCTGRQAGPACVQACPRGALRMAAVSDLRRRRC
HHHHHHHHCCCCCEEEECCEEEEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHH
AQAAAGLAKYVTALHPEDGRS
HHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]