| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is yddB [H]
Identifier: 78355494
GI number: 78355494
Start: 453541
End: 456066
Strand: Direct
Name: yddB [H]
Synonym: Dde_0447
Alternate gene names: 78355494
Gene position: 453541-456066 (Clockwise)
Preceding gene: 78355493
Following gene: 78355495
Centisome position: 12.16
GC content: 57.52
Gene sequence:
>2526_bases ATGAAAAAGCTTCTTCTGGGCTGCATGCTTCTGCTGCTGATGTCCGGCGCATTGCCCGCGTCGGCTGCAGAGGCTGAACA GAAGGGTGGTCCGGCGGCGGGAGACCGGCCGGGAAACGCGGTGCAGCTGGAACCGGCGCGCAAAAATGGCGGGCCTGCAG CCAATGCCACCGGTCCGGCGGCACATAACGGCACCGTGTACCGGCTTGCTCCGGTTGATGTGCAGGAGGAGACGCGCGAG ACCGGCCGGGCCACCATAGGCGGCAAGGCGCTGCGGTCCATGCCTTCGCATACCGGTTCGCTTACCGAAGCCCTGAAGGG CATGCCCAACGTGCAGTTTTCCAACGACATGATTTCCGGACAGACGGCAGGGGAAATAGCTCCGCCGCGTATCTCCATTT CGGGTGCAAAGCCGTATGAAAACAACTTTATGATTGACGGCATGAGCATAACAAACCGCATCAACCCGAGCGGGCTGGGG GACAGTGCCTCCCAGAATGATCTGACCGTGGGCGGGGGGGACCAGACACTTTTTTACGATACCCAGCTGCTGGACAACAT AACCGTGTACACCAGCAATATTCCCGCCAGTTTCGGAGGATTTGTGGGCGGCGTGGTGGACGGAGAACTGCGTGATCCCA AAATGGATGAATGGCATTTCAGCGTGACAGGCAAACATACCCGCAGCAAGTGGTTCACTCTGCGCGGCGTGGATGAAAAT TCTGAAAAACCGTCCAGCCAGCCCCGTTTTTCCATCAACACGGTTTCCGCCACTGCAGAAGGGCCGGTGAGCGATACCGC GGGGCTGCTGCTGGCAGTTTCGCGCAAGCATTCTGTCATACCCCTTAAGCGTGAAGAAAACGACGGCACCATCAATGATG GTGACCAGCACCGCATAAGCGACAACTTCATGGCCAAGATGGTCGTGCGTCCTTCCGACGACCTGACGCTGAAAATCGAC GCGACCTATGCCCCCTACGAAGAAAAACGCTGGCGCGAAAAGTGGCCGGACAGCGACTGGTTTTTGCAGAACGATGCATA CCGTCTGGGGCTGCAGGCCGAATACGAGACTCAGCACGGTACGCTGAGCGGCAAAACATCGTACATGCTGCACGGCTACA ACCGCGAATCGTCTTCGGCGCACCGTTACAGCAACACCTCCACCGATGAGCAGCGCGGCGGCGTGGGTGACCTGAAGCAG GACACGCAGGAACTGGACATGCGTTTCGACTTCGACTCGGTGGACTACACCGCGGGCATGCTGACGTGGAACGTTTCCAC AGGGGTGCTGTGGCACAACACGCTGGTCGATTTTACGGCCGGTGCTGCGGAAGTGGACGTGGACGTGCTGATGGCGGGCA ACCGGAGGATTCTCACCAATTCCAAATACCTTGAGCATAGTCAGGAACTGTCGCTGAACACGCTTGGCTACTACGCCCAG ACCGAACTTACGCTGGGCAACTTCACCCTTACTCCGGGGCTGCGTGCCGATTATGACGATTTTTCCACCAATCTGGACAT AGCCCACCGCCTGAAGGCCGAATACGACACCTTCGGCGACGGTTCTCTGCGGCTGACAGCGGGCCTGAACCGTTATTACG GCGGTCAGCTTTCGGCCTATGCGCTTAAGCGGTACCGCCCGCAGATTGTGTTTCAGCAGCGCGACATGGATGGCGACGGC GTGTTCGAGTCGAGCAAGACCACCTATGGAACGGACAAGAAGCACACCATGTCGGGGCTGGATACGCCGTATACCGATGA AATTTCCGCCGGTGTGCAGGGTGATTTTCTGGGCTTTGAATACGGGGTCGAGCTGGTGAAGCGTGACTACAAGAACCAGC TGGTAAGCAAGAGCGACGACAAGAAAAGCTACTATATGACCAACGAAGGCAAGAGCGAATACGAAGGCATAACGCTGACC CTTGCCAGAGCCGTGCAGACGCAGTCCATGGGCGACCACGTGTTCGGTCTGGGCATTACCAAGTCCAAACGCAAGACATT CAACGGCAGCTACGACGAAGATGTCTACGACGAGGCCAACGGTGTGCGGCTGGATTATGACAAGGTCTACTACAACGGCG AACTGACCGACCGTAATGCGCTGCCGGCAGACGATTACAACGCGCCTGTGGTGCTGACCTTTTCGTGGCAGGGGCATTTT ATGGAAGATACGCTGCGCCTGAATACCGTCACCCGCTGGCGTGATTCGGCAACGGGGCTCATGGCCGATTCCCGTTTCAG CGATGACACGCCCCACGGCACCACTTCGGGCAGCAATACCAACAAAAGCGACAAGTGGATGGGCGAAGGCACTGAATACC ACAACGCCTACAAACACGGTGTGATTTCCGGCGGGTTTGTGACCGACCTCGGCGTGGAATGGGATGTGCTGAAAGAAGAA GAGTACACCCTGACCATGCTCATGGATGTGAACAACGTGTTTGATGAATCGCAGGAAGTCAGTGTGACCGAAGGTGAAGC CTCGCGCGGGCGTTCCTTTTATGCCGGTTTCCGCTGCGAGTTTTAG
Upstream 100 bases:
>100_bases GATTGTATGTGTTCCCGTCCCTGCGGCGACGGAGACTCGCCGCAGGGATTTTTTTATACATCTTGGTTGAAAATGAGACT CATTACCTAAGGGGGTAGAG
Downstream 100 bases:
>100_bases CTGAATAGCGGAGTATATGACGCAGTGCCCGGCGGCGTGCCGCCGGGTGCTGCCTGTCCTTTCCGGCTGGGGCGTGTACG GGCGCCGCAACCGGATGATG
Product: TonB dependent receptor domain-containing protein
Products: NA
Alternate protein names: CDS103 [H]
Number of amino acids: Translated: 841; Mature: 841
Protein sequence:
>841_residues MKKLLLGCMLLLLMSGALPASAAEAEQKGGPAAGDRPGNAVQLEPARKNGGPAANATGPAAHNGTVYRLAPVDVQEETRE TGRATIGGKALRSMPSHTGSLTEALKGMPNVQFSNDMISGQTAGEIAPPRISISGAKPYENNFMIDGMSITNRINPSGLG DSASQNDLTVGGGDQTLFYDTQLLDNITVYTSNIPASFGGFVGGVVDGELRDPKMDEWHFSVTGKHTRSKWFTLRGVDEN SEKPSSQPRFSINTVSATAEGPVSDTAGLLLAVSRKHSVIPLKREENDGTINDGDQHRISDNFMAKMVVRPSDDLTLKID ATYAPYEEKRWREKWPDSDWFLQNDAYRLGLQAEYETQHGTLSGKTSYMLHGYNRESSSAHRYSNTSTDEQRGGVGDLKQ DTQELDMRFDFDSVDYTAGMLTWNVSTGVLWHNTLVDFTAGAAEVDVDVLMAGNRRILTNSKYLEHSQELSLNTLGYYAQ TELTLGNFTLTPGLRADYDDFSTNLDIAHRLKAEYDTFGDGSLRLTAGLNRYYGGQLSAYALKRYRPQIVFQQRDMDGDG VFESSKTTYGTDKKHTMSGLDTPYTDEISAGVQGDFLGFEYGVELVKRDYKNQLVSKSDDKKSYYMTNEGKSEYEGITLT LARAVQTQSMGDHVFGLGITKSKRKTFNGSYDEDVYDEANGVRLDYDKVYYNGELTDRNALPADDYNAPVVLTFSWQGHF MEDTLRLNTVTRWRDSATGLMADSRFSDDTPHGTTSGSNTNKSDKWMGEGTEYHNAYKHGVISGGFVTDLGVEWDVLKEE EYTLTMLMDVNNVFDESQEVSVTEGEASRGRSFYAGFRCEF
Sequences:
>Translated_841_residues MKKLLLGCMLLLLMSGALPASAAEAEQKGGPAAGDRPGNAVQLEPARKNGGPAANATGPAAHNGTVYRLAPVDVQEETRE TGRATIGGKALRSMPSHTGSLTEALKGMPNVQFSNDMISGQTAGEIAPPRISISGAKPYENNFMIDGMSITNRINPSGLG DSASQNDLTVGGGDQTLFYDTQLLDNITVYTSNIPASFGGFVGGVVDGELRDPKMDEWHFSVTGKHTRSKWFTLRGVDEN SEKPSSQPRFSINTVSATAEGPVSDTAGLLLAVSRKHSVIPLKREENDGTINDGDQHRISDNFMAKMVVRPSDDLTLKID ATYAPYEEKRWREKWPDSDWFLQNDAYRLGLQAEYETQHGTLSGKTSYMLHGYNRESSSAHRYSNTSTDEQRGGVGDLKQ DTQELDMRFDFDSVDYTAGMLTWNVSTGVLWHNTLVDFTAGAAEVDVDVLMAGNRRILTNSKYLEHSQELSLNTLGYYAQ TELTLGNFTLTPGLRADYDDFSTNLDIAHRLKAEYDTFGDGSLRLTAGLNRYYGGQLSAYALKRYRPQIVFQQRDMDGDG VFESSKTTYGTDKKHTMSGLDTPYTDEISAGVQGDFLGFEYGVELVKRDYKNQLVSKSDDKKSYYMTNEGKSEYEGITLT LARAVQTQSMGDHVFGLGITKSKRKTFNGSYDEDVYDEANGVRLDYDKVYYNGELTDRNALPADDYNAPVVLTFSWQGHF MEDTLRLNTVTRWRDSATGLMADSRFSDDTPHGTTSGSNTNKSDKWMGEGTEYHNAYKHGVISGGFVTDLGVEWDVLKEE EYTLTMLMDVNNVFDESQEVSVTEGEASRGRSFYAGFRCEF >Mature_841_residues MKKLLLGCMLLLLMSGALPASAAEAEQKGGPAAGDRPGNAVQLEPARKNGGPAANATGPAAHNGTVYRLAPVDVQEETRE TGRATIGGKALRSMPSHTGSLTEALKGMPNVQFSNDMISGQTAGEIAPPRISISGAKPYENNFMIDGMSITNRINPSGLG DSASQNDLTVGGGDQTLFYDTQLLDNITVYTSNIPASFGGFVGGVVDGELRDPKMDEWHFSVTGKHTRSKWFTLRGVDEN SEKPSSQPRFSINTVSATAEGPVSDTAGLLLAVSRKHSVIPLKREENDGTINDGDQHRISDNFMAKMVVRPSDDLTLKID ATYAPYEEKRWREKWPDSDWFLQNDAYRLGLQAEYETQHGTLSGKTSYMLHGYNRESSSAHRYSNTSTDEQRGGVGDLKQ DTQELDMRFDFDSVDYTAGMLTWNVSTGVLWHNTLVDFTAGAAEVDVDVLMAGNRRILTNSKYLEHSQELSLNTLGYYAQ TELTLGNFTLTPGLRADYDDFSTNLDIAHRLKAEYDTFGDGSLRLTAGLNRYYGGQLSAYALKRYRPQIVFQQRDMDGDG VFESSKTTYGTDKKHTMSGLDTPYTDEISAGVQGDFLGFEYGVELVKRDYKNQLVSKSDDKKSYYMTNEGKSEYEGITLT LARAVQTQSMGDHVFGLGITKSKRKTFNGSYDEDVYDEANGVRLDYDKVYYNGELTDRNALPADDYNAPVVLTFSWQGHF MEDTLRLNTVTRWRDSATGLMADSRFSDDTPHGTTSGSNTNKSDKWMGEGTEYHNAYKHGVISGGFVTDLGVEWDVLKEE EYTLTMLMDVNNVFDESQEVSVTEGEASRGRSFYAGFRCEF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae HI_1369 [H]
Homologues:
Organism=Escherichia coli, GI1787771, Length=815, Percent_Identity=23.9263803680982, Blast_Score=188, Evalue=1e-48,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 [H]
Pfam domain/function: PF07715 Plug [H]
EC number: NA
Molecular weight: Translated: 92896; Mature: 92896
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLLLGCMLLLLMSGALPASAAEAEQKGGPAAGDRPGNAVQLEPARKNGGPAANATGPA CHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC AHNGTVYRLAPVDVQEETRETGRATIGGKALRSMPSHTGSLTEALKGMPNVQFSNDMISG CCCCEEEEEECCCCHHHHHHHCCEEECCHHHHHCCCCCCHHHHHHCCCCCCEECCCCCCC QTAGEIAPPRISISGAKPYENNFMIDGMSITNRINPSGLGDSASQNDLTVGGGDQTLFYD CCCCCCCCCEEEECCCCCCCCCEEEECCHHCCCCCCCCCCCCCCCCCEEECCCCCEEEEE TQLLDNITVYTSNIPASFGGFVGGVVDGELRDPKMDEWHFSVTGKHTRSKWFTLRGVDEN HHHHCCEEEEECCCCCHHCCCCCCEECCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCC SEKPSSQPRFSINTVSATAEGPVSDTAGLLLAVSRKHSVIPLKREENDGTINDGDQHRIS CCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCC DNFMAKMVVRPSDDLTLKIDATYAPYEEKRWREKWPDSDWFLQNDAYRLGLQAEYETQHG CCEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHCCCCCEEEECCCEEEEEEEEECCCCC TLSGKTSYMLHGYNRESSSAHRYSNTSTDEQRGGVGDLKQDTQELDMRFDFDSVDYTAGM CCCCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHCEEECCCCCCEEEEE LTWNVSTGVLWHNTLVDFTAGAAEVDVDVLMAGNRRILTNSKYLEHSQELSLNTLGYYAQ EEEECCCCEEEECHHHHHCCCCCEEEEEEEEECCEEEEECCHHHHHHHHCCEEEECEEEE TELTLGNFTLTPGLRADYDDFSTNLDIAHRLKAEYDTFGDGSLRLTAGLNRYYGGQLSAY EEEEECCEEECCCCCCCCCHHCCCCCHHHHHHHCCCCCCCCCEEEEECCCHHCCCCCHHH ALKRYRPQIVFQQRDMDGDGVFESSKTTYGTDKKHTMSGLDTPYTDEISAGVQGDFLGFE HHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHCCCCCCCCCCHH YGVELVKRDYKNQLVSKSDDKKSYYMTNEGKSEYEGITLTLARAVQTQSMGDHVFGLGIT HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEEHHHHHHCCCCEEEEECCC KSKRKTFNGSYDEDVYDEANGVRLDYDKVYYNGELTDRNALPADDYNAPVVLTFSWQGHF CCCCCCCCCCCCCHHHHCCCCEEEEEHEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCE MEDTLRLNTVTRWRDSATGLMADSRFSDDTPHGTTSGSNTNKSDKWMGEGTEYHNAYKHG ECCEEEEEEEHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC VISGGFVTDLGVEWDVLKEEEYTLTMLMDVNNVFDESQEVSVTEGEASRGRSFYAGFRCE CCCCCEEEECCCEEEEECCCCEEEEEEEECHHHHCCCCCEEEECCCCCCCCEEEEEEEEC F C >Mature Secondary Structure MKKLLLGCMLLLLMSGALPASAAEAEQKGGPAAGDRPGNAVQLEPARKNGGPAANATGPA CHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC AHNGTVYRLAPVDVQEETRETGRATIGGKALRSMPSHTGSLTEALKGMPNVQFSNDMISG CCCCEEEEEECCCCHHHHHHHCCEEECCHHHHHCCCCCCHHHHHHCCCCCCEECCCCCCC QTAGEIAPPRISISGAKPYENNFMIDGMSITNRINPSGLGDSASQNDLTVGGGDQTLFYD CCCCCCCCCEEEECCCCCCCCCEEEECCHHCCCCCCCCCCCCCCCCCEEECCCCCEEEEE TQLLDNITVYTSNIPASFGGFVGGVVDGELRDPKMDEWHFSVTGKHTRSKWFTLRGVDEN HHHHCCEEEEECCCCCHHCCCCCCEECCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCC SEKPSSQPRFSINTVSATAEGPVSDTAGLLLAVSRKHSVIPLKREENDGTINDGDQHRIS CCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCC DNFMAKMVVRPSDDLTLKIDATYAPYEEKRWREKWPDSDWFLQNDAYRLGLQAEYETQHG CCEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHCCCCCEEEECCCEEEEEEEEECCCCC TLSGKTSYMLHGYNRESSSAHRYSNTSTDEQRGGVGDLKQDTQELDMRFDFDSVDYTAGM CCCCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHCEEECCCCCCEEEEE LTWNVSTGVLWHNTLVDFTAGAAEVDVDVLMAGNRRILTNSKYLEHSQELSLNTLGYYAQ EEEECCCCEEEECHHHHHCCCCCEEEEEEEEECCEEEEECCHHHHHHHHCCEEEECEEEE TELTLGNFTLTPGLRADYDDFSTNLDIAHRLKAEYDTFGDGSLRLTAGLNRYYGGQLSAY EEEEECCEEECCCCCCCCCHHCCCCCHHHHHHHCCCCCCCCCEEEEECCCHHCCCCCHHH ALKRYRPQIVFQQRDMDGDGVFESSKTTYGTDKKHTMSGLDTPYTDEISAGVQGDFLGFE HHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHCCCCCCCCCCHH YGVELVKRDYKNQLVSKSDDKKSYYMTNEGKSEYEGITLTLARAVQTQSMGDHVFGLGIT HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEEHHHHHHCCCCEEEEECCC KSKRKTFNGSYDEDVYDEANGVRLDYDKVYYNGELTDRNALPADDYNAPVVLTFSWQGHF CCCCCCCCCCCCCHHHHCCCCEEEEEHEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCE MEDTLRLNTVTRWRDSATGLMADSRFSDDTPHGTTSGSNTNKSDKWMGEGTEYHNAYKHG ECCEEEEEEEHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC VISGGFVTDLGVEWDVLKEEEYTLTMLMDVNNVFDESQEVSVTEGEASRGRSFYAGFRCE CCCCCEEEECCCEEEEECCCCEEEEEEEECHHHHCCCCCEEEECCCCCCCCEEEEEEEEC F C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]