| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is ubiE [C]
Identifier: 78355476
GI number: 78355476
Start: 428591
End: 430885
Strand: Direct
Name: ubiE [C]
Synonym: Dde_0429
Alternate gene names: 78355476
Gene position: 428591-430885 (Clockwise)
Preceding gene: 78355475
Following gene: 78355477
Centisome position: 11.49
GC content: 56.99
Gene sequence:
>2295_bases ATGAACATTCTGCAGCAGACTGCACCAGATGCGTCGCCTGTGATTTCTTTGCTTTTGCCGACAAAGGACCGGCATGAAAT GCTGGTGCGCATGCTTGCCTCCATGGAAAAGGCCGCAGGCCGTATTCCATGGGAGGCAAGAGTATTGTACGCGGGTGAAG ACGTGGCGCAGAAAGCGGCGGCATTGCGGCAGCGGTTTCCACAGGTGCAAGTGTATGATCAGGAAGAACATTTTTCGCCG GGCAGACCGTCATGGCCGTCCATGATGCAGTTTTTGCTCCGGCAGACGGATGCCCCGTGGTTTATGTATGCCTCTGACGA TATTGTTTTTGCACCTGATGCTGTACTGCTGGCCCTGAAGGCTCTGCAGGACAGGCAGGGACTGGCTGCGGGGGTGGCCA TGGGATATCGCAATGTGCACGCTGCTCAGCCAGAGTGGGAACAATATGGTGTCGATCTGACTCTTGGCGATCAGGTACTG GTCAATTACGGATTGCTTAGCACTCCTCTGGTGAAATCACTGGGGGGCTTTTCAGACGCGTACCGGTTTTACTGCGCAGA TGGCGACATTTGCCTGCGTATCTTGCAGGCCGGATACGAAATAGTTGCATGTCCGGAAGCACACGTTCTGCATGATAATG TTCTGGATGTGTCAAAACAAAATAATAATAATCTGGCAGAACAGGATATTGCTGCATACCGTGCTGCCTGGACAGGCAGT TACTATGACGTGCAGCGTGTCAAACGGCTGTTTGCTGCCGATGCAGATTCCGAACCTTTGATGCCCCGGGGGCGTGCGCT TGCGCCGGAGCAGCAGACGGACGGCTCTTTGCTGATACCCGCAGAAAGCGACGCACTGTGGGCACTGCATCAGGCAGGTC TGTACAGGGCGGGTACTCCGCTCAGGCTGCATCTCGGATGCGGCGAGACGCATCTTGAGGGGTATGTGAATATAGATTAC CCGCAGGACAGGCATGCCGTGATGCGGACAAAGGCCGACATCTGCGCGGAGATAAAGCAGCTGCGTTTTCCCGACAACAG TGTGGATGAAATCAGGCTGCATCATGTGTTCGAGCACTTTAACCGTGTGGAGGCGCTGGGACTTCTGGTGCGCTGGCACC GGTGGCTGCGTACGGGCGGAGTGCTGCACATCGAAACGCCTGACCTTGAAGGAAGCGCCCGCACGGTGCTGTCGGACGTG CCCCTGAAGGAAAAAACCGCCGCGGTGCGGCATCTGGCGGGCGATCAGACAGAGACATGGGCGTATCATATCGATCACTG GTTTCCTCAGCGGTTTCAGACCACGCTCAGTCATCTGGGGTATGGTGAACTGCGTATAACAGCAGATCGGTGGAAGAAGC CTCCGTACCTTGCCAATGTTACCGCCGTGGCTGTCAAACAGGCTGATATACCGCTGGAAAAACTGCTGCAGGCTGCTGAT GAACTGCTGTGGCTGAGTACCGTGGCTCCGGCGGAAATTCCCACCTATGAGGTGTGGAAAAAACAGCTGCGCGAATTTAT GGCCTACCGCCCTGTGCACCCTGCTGCCGGGCAGCCTGCACAGCAGCAGACTGCCGGTACTGTGCTGCCGCCGCTTTGCG CCGCCCCGCTGAAGGACATTCATGATTTCAATCAGCGCGGGCGCGACCGCTGGATGGCGGCAAAGGCGGCCGCGGTACCG GACGGCGCCCGCGTGCTGGACGTGGGTGCGGGAACGTGTCCGTACCGTCCGCTTTTTTCACACTGCCGCTATGTGGCTCA TGATTTCAAAGAGTATCAGGGCGAAAAGCTGGGTGGCGGCACGGACTACGGCGATATTGATCTGGTGGGCGACATTACCG CCATACCGGCTCCCGATGCGTCGTTTGACGTGGTGCTGTGCACGGAGGTTCTGGAGCATGTTCCTGATCCGGCAGCAGCC CTGCGCGAGATGGTCCGGCTGCTGCGTCCGGGCGGCAGGCTGCTGCTTACGGCCCCTCTCGGGTCGGGGCTGCATCAGGA GCCGTTCCACTATTATGGCGGATTCACTAGGCATTTTTATGAAAAATTTTTGCCGCCTCTGGGCATCAGGATAACGGAGC TGCGGCCCAACGGCGGTTTTTTCCGTCATCTTGCGCAGGAATGCGCCAGAGTATCGTGGCTGCTGGATAAAAAACCGGAA TTTGCCGACGGGCGGGCAGAAGAACTGCGTGCGTTTTTCGGCGAAATGCTGCCCCGTTATCTTGCAGGGATGGATGACAG ATACATGCTGGAAGATTTCACTGTGGGATATTTTGTGGAAGGAGTGAAAGCGTGA
Upstream 100 bases:
>100_bases AAATGAGCGGCTTCACCTTTTCCGAAGTGGGATACGGTGTGGGCTTTGCAGTGCGCATGCGCTAGCGCCGTGCGGAACGT TATAACCTTCCGAGGAATAT
Downstream 100 bases:
>100_bases GGACGCAGGCCGTCGTATTCAGCAAGGACAGGGCGCTGCAGTTGCGCGCCACCCTCGAATCGCTGCTGCTGCGGTGCACT GATGCCGCGGAGGAACTGCG
Product: ubiquinone/menaquinone biosynthesis methylase-like protein
Products: S-Adenosyl-L-Homocysteine; @OCTA02.txt*2- Polyprenyl-3-Methyl-6-Methoxy-1,4-Benzoquinol!; Menaquinol. [C]
Alternate protein names: Ubiquinone/Menaquinone Biosynthesis Methylase-Like Protein; TPR Repeat-Containing Methylase UbiE
Number of amino acids: Translated: 764; Mature: 764
Protein sequence:
>764_residues MNILQQTAPDASPVISLLLPTKDRHEMLVRMLASMEKAAGRIPWEARVLYAGEDVAQKAAALRQRFPQVQVYDQEEHFSP GRPSWPSMMQFLLRQTDAPWFMYASDDIVFAPDAVLLALKALQDRQGLAAGVAMGYRNVHAAQPEWEQYGVDLTLGDQVL VNYGLLSTPLVKSLGGFSDAYRFYCADGDICLRILQAGYEIVACPEAHVLHDNVLDVSKQNNNNLAEQDIAAYRAAWTGS YYDVQRVKRLFAADADSEPLMPRGRALAPEQQTDGSLLIPAESDALWALHQAGLYRAGTPLRLHLGCGETHLEGYVNIDY PQDRHAVMRTKADICAEIKQLRFPDNSVDEIRLHHVFEHFNRVEALGLLVRWHRWLRTGGVLHIETPDLEGSARTVLSDV PLKEKTAAVRHLAGDQTETWAYHIDHWFPQRFQTTLSHLGYGELRITADRWKKPPYLANVTAVAVKQADIPLEKLLQAAD ELLWLSTVAPAEIPTYEVWKKQLREFMAYRPVHPAAGQPAQQQTAGTVLPPLCAAPLKDIHDFNQRGRDRWMAAKAAAVP DGARVLDVGAGTCPYRPLFSHCRYVAHDFKEYQGEKLGGGTDYGDIDLVGDITAIPAPDASFDVVLCTEVLEHVPDPAAA LREMVRLLRPGGRLLLTAPLGSGLHQEPFHYYGGFTRHFYEKFLPPLGIRITELRPNGGFFRHLAQECARVSWLLDKKPE FADGRAEELRAFFGEMLPRYLAGMDDRYMLEDFTVGYFVEGVKA
Sequences:
>Translated_764_residues MNILQQTAPDASPVISLLLPTKDRHEMLVRMLASMEKAAGRIPWEARVLYAGEDVAQKAAALRQRFPQVQVYDQEEHFSP GRPSWPSMMQFLLRQTDAPWFMYASDDIVFAPDAVLLALKALQDRQGLAAGVAMGYRNVHAAQPEWEQYGVDLTLGDQVL VNYGLLSTPLVKSLGGFSDAYRFYCADGDICLRILQAGYEIVACPEAHVLHDNVLDVSKQNNNNLAEQDIAAYRAAWTGS YYDVQRVKRLFAADADSEPLMPRGRALAPEQQTDGSLLIPAESDALWALHQAGLYRAGTPLRLHLGCGETHLEGYVNIDY PQDRHAVMRTKADICAEIKQLRFPDNSVDEIRLHHVFEHFNRVEALGLLVRWHRWLRTGGVLHIETPDLEGSARTVLSDV PLKEKTAAVRHLAGDQTETWAYHIDHWFPQRFQTTLSHLGYGELRITADRWKKPPYLANVTAVAVKQADIPLEKLLQAAD ELLWLSTVAPAEIPTYEVWKKQLREFMAYRPVHPAAGQPAQQQTAGTVLPPLCAAPLKDIHDFNQRGRDRWMAAKAAAVP DGARVLDVGAGTCPYRPLFSHCRYVAHDFKEYQGEKLGGGTDYGDIDLVGDITAIPAPDASFDVVLCTEVLEHVPDPAAA LREMVRLLRPGGRLLLTAPLGSGLHQEPFHYYGGFTRHFYEKFLPPLGIRITELRPNGGFFRHLAQECARVSWLLDKKPE FADGRAEELRAFFGEMLPRYLAGMDDRYMLEDFTVGYFVEGVKA >Mature_764_residues MNILQQTAPDASPVISLLLPTKDRHEMLVRMLASMEKAAGRIPWEARVLYAGEDVAQKAAALRQRFPQVQVYDQEEHFSP GRPSWPSMMQFLLRQTDAPWFMYASDDIVFAPDAVLLALKALQDRQGLAAGVAMGYRNVHAAQPEWEQYGVDLTLGDQVL VNYGLLSTPLVKSLGGFSDAYRFYCADGDICLRILQAGYEIVACPEAHVLHDNVLDVSKQNNNNLAEQDIAAYRAAWTGS YYDVQRVKRLFAADADSEPLMPRGRALAPEQQTDGSLLIPAESDALWALHQAGLYRAGTPLRLHLGCGETHLEGYVNIDY PQDRHAVMRTKADICAEIKQLRFPDNSVDEIRLHHVFEHFNRVEALGLLVRWHRWLRTGGVLHIETPDLEGSARTVLSDV PLKEKTAAVRHLAGDQTETWAYHIDHWFPQRFQTTLSHLGYGELRITADRWKKPPYLANVTAVAVKQADIPLEKLLQAAD ELLWLSTVAPAEIPTYEVWKKQLREFMAYRPVHPAAGQPAQQQTAGTVLPPLCAAPLKDIHDFNQRGRDRWMAAKAAAVP DGARVLDVGAGTCPYRPLFSHCRYVAHDFKEYQGEKLGGGTDYGDIDLVGDITAIPAPDASFDVVLCTEVLEHVPDPAAA LREMVRLLRPGGRLLLTAPLGSGLHQEPFHYYGGFTRHFYEKFLPPLGIRITELRPNGGFFRHLAQECARVSWLLDKKPE FADGRAEELRAFFGEMLPRYLAGMDDRYMLEDFTVGYFVEGVKA
Specific function: Methyltransferase Required For The Conversion Of Dimethylmenaquinone (Dmkh2) To Menaquinone (Mkh2) And The Conversion Of 2-Polyprenyl-6-Methoxy-1,4-Benzoquinol (Ddmqh2) To 2-Polyprenyl-3-Methyl-6-Methoxy-1,4-Benzoquinol (Dmqh2). [C]
COG id: COG4627
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 2.1.1.- [C]
Molecular weight: Translated: 85645; Mature: 85645
Theoretical pI: Translated: 6.17; Mature: 6.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNILQQTAPDASPVISLLLPTKDRHEMLVRMLASMEKAAGRIPWEARVLYAGEDVAQKAA CCCHHHCCCCHHHHHEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHH ALRQRFPQVQVYDQEEHFSPGRPSWPSMMQFLLRQTDAPWFMYASDDIVFAPDAVLLALK HHHHHCCCEEEECCHHCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCEEECCHHHHHHHH ALQDRQGLAAGVAMGYRNVHAAQPEWEQYGVDLTLGDQVLVNYGLLSTPLVKSLGGFSDA HHHHHCCHHHHHHHHHHHCCCCCCCHHHHCCCEEECCHHHHHCCCHHHHHHHHHCCCCCC YRFYCADGDICLRILQAGYEIVACPEAHVLHDNVLDVSKQNNNNLAEQDIAAYRAAWTGS CEEEECCHHHHHHHHHCCCEEEECCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCC YYDVQRVKRLFAADADSEPLMPRGRALAPEQQTDGSLLIPAESDALWALHQAGLYRAGTP HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHCCCEECCCC LRLHLGCGETHLEGYVNIDYPQDRHAVMRTKADICAEIKQLRFPDNSVDEIRLHHVFEHF EEEEECCCCHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH NRVEALGLLVRWHRWLRTGGVLHIETPDLEGSARTVLSDVPLKEKTAAVRHLAGDQTETW HHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCE AYHIDHWFPQRFQTTLSHLGYGELRITADRWKKPPYLANVTAVAVKQADIPLEKLLQAAD EEEHHHHHHHHHHHHHHHCCCCEEEEEHHHCCCCCCEECHHEEEEECCCCCHHHHHHHHH ELLWLSTVAPAEIPTYEVWKKQLREFMAYRPVHPAAGQPAQQQTAGTVLPPLCAAPLKDI HHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHH HDFNQRGRDRWMAAKAAAVPDGARVLDVGAGTCPYRPLFSHCRYVAHDFKEYQGEKLGGG HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC TDYGDIDLVGDITAIPAPDASFDVVLCTEVLEHVPDPAAALREMVRLLRPGGRLLLTAPL CCCCCEEEEECEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECC GSGLHQEPFHYYGGFTRHFYEKFLPPLGIRITELRPNGGFFRHLAQECARVSWLLDKKPE CCCCCCCCHHHHCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC FADGRAEELRAFFGEMLPRYLAGMDDRYMLEDFTVGYFVEGVKA CCCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHCCHHHHHHCCCC >Mature Secondary Structure MNILQQTAPDASPVISLLLPTKDRHEMLVRMLASMEKAAGRIPWEARVLYAGEDVAQKAA CCCHHHCCCCHHHHHEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHH ALRQRFPQVQVYDQEEHFSPGRPSWPSMMQFLLRQTDAPWFMYASDDIVFAPDAVLLALK HHHHHCCCEEEECCHHCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCEEECCHHHHHHHH ALQDRQGLAAGVAMGYRNVHAAQPEWEQYGVDLTLGDQVLVNYGLLSTPLVKSLGGFSDA HHHHHCCHHHHHHHHHHHCCCCCCCHHHHCCCEEECCHHHHHCCCHHHHHHHHHCCCCCC YRFYCADGDICLRILQAGYEIVACPEAHVLHDNVLDVSKQNNNNLAEQDIAAYRAAWTGS CEEEECCHHHHHHHHHCCCEEEECCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCC YYDVQRVKRLFAADADSEPLMPRGRALAPEQQTDGSLLIPAESDALWALHQAGLYRAGTP HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHCCCEECCCC LRLHLGCGETHLEGYVNIDYPQDRHAVMRTKADICAEIKQLRFPDNSVDEIRLHHVFEHF EEEEECCCCHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH NRVEALGLLVRWHRWLRTGGVLHIETPDLEGSARTVLSDVPLKEKTAAVRHLAGDQTETW HHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCE AYHIDHWFPQRFQTTLSHLGYGELRITADRWKKPPYLANVTAVAVKQADIPLEKLLQAAD EEEHHHHHHHHHHHHHHHCCCCEEEEEHHHCCCCCCEECHHEEEEECCCCCHHHHHHHHH ELLWLSTVAPAEIPTYEVWKKQLREFMAYRPVHPAAGQPAQQQTAGTVLPPLCAAPLKDI HHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHH HDFNQRGRDRWMAAKAAAVPDGARVLDVGAGTCPYRPLFSHCRYVAHDFKEYQGEKLGGG HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC TDYGDIDLVGDITAIPAPDASFDVVLCTEVLEHVPDPAAALREMVRLLRPGGRLLLTAPL CCCCCEEEEECEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECC GSGLHQEPFHYYGGFTRHFYEKFLPPLGIRITELRPNGGFFRHLAQECARVSWLLDKKPE CCCCCCCCHHHHCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC FADGRAEELRAFFGEMLPRYLAGMDDRYMLEDFTVGYFVEGVKA CCCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: S-Adenosyl-L-Methionine; 2-Polyprenyl-6- Methoxy-1,4-Benzoquinol; Demethylmenaquinol [C]
Specific reaction: S-Adenosyl-L-Methionine + @OCTA02.txt*2-Polyprenyl-6- Methoxy-1,4-Benzoquinol! = S-Adenosyl-L-Homocysteine + 2- Polyprenyl-3-Methyl-6-Methoxy -1,4-Benzoquinol S-Adenosyl-L-Methionine + Demethylmenaquinol = S-Adenosyl-L-Homocysteine + Menaquinol. [C]
General reaction: Transferring one-carbon groups; Methyltransferases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA