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The map label for this gene is ybaK [H]

Identifier: 78355461

GI number: 78355461

Start: 411448

End: 411915

Strand: Direct

Name: ybaK [H]

Synonym: Dde_0414

Alternate gene names: 78355461

Gene position: 411448-411915 (Clockwise)

Preceding gene: 78355460

Following gene: 78355471

Centisome position: 11.03

GC content: 59.62

Gene sequence:

>468_bases
ATGACACCGGCTATTGCAGCAGCAAAAAAAGCGAAAATATGGTTTGCGGTGCACGAATACGAGCATGACCCCGCCGCGGA
GTCGTTCGGTAAGGAAGCCGCGGAAAAGCTGGAAACGGACCCTGCGAGGGTGTTTAAAACGCTGGTGGTTGCTGTTTCGG
AGCGTGATCTGGCCGTGATGGTGGTGCCTGTGCTGCACCAGCTGGATCTGAAGCTGGCGGCAAAGGCGCTGGGTGTGAAA
AAGGCGGCCATGGCTGATGTGAAACAGGTGGAGAGAGCTACAGGCTATGTGCTCGGGGGCGTGAGCCCGCTGGGACAGAA
AAAGCGGTTGCCCACCGTGGTGGACGCTTCCGCGGCGGAACATGCCAGTGTTTTTGTCAGCGGAGGACGCAGAGGGCTTG
ATATCGAGCTGGCACCGTCAGACCTGTGCGCACTGACGGGCGGCGTGTTTGCTCCGGTTGCCCGCTGA

Upstream 100 bases:

>100_bases
TGGTTCTTGCATATGCGCCCGGCCGGCGGTAGACCATGCGCCATGTCAGCGGGCGCGGGCCCGTGTTTTCCGGTAACTGC
AACAATCTGGATGAAGAAGT

Downstream 100 bases:

>100_bases
TTTCGTGTGATCCTCGTGTGACTGCCGACCTGCTTTCCGGTGTGCTGCGGGCGCTGTTGAGGCCTGTTTTTTTGCGGCGC
AGCGGTGGGCCTGTGTTGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MTPAIAAAKKAKIWFAVHEYEHDPAAESFGKEAAEKLETDPARVFKTLVVAVSERDLAVMVVPVLHQLDLKLAAKALGVK
KAAMADVKQVERATGYVLGGVSPLGQKKRLPTVVDASAAEHASVFVSGGRRGLDIELAPSDLCALTGGVFAPVAR

Sequences:

>Translated_155_residues
MTPAIAAAKKAKIWFAVHEYEHDPAAESFGKEAAEKLETDPARVFKTLVVAVSERDLAVMVVPVLHQLDLKLAAKALGVK
KAAMADVKQVERATGYVLGGVSPLGQKKRLPTVVDASAAEHASVFVSGGRRGLDIELAPSDLCALTGGVFAPVAR
>Mature_154_residues
TPAIAAAKKAKIWFAVHEYEHDPAAESFGKEAAEKLETDPARVFKTLVVAVSERDLAVMVVPVLHQLDLKLAAKALGVKK
AAMADVKQVERATGYVLGGVSPLGQKKRLPTVVDASAAEHASVFVSGGRRGLDIELAPSDLCALTGGVFAPVAR

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro). May compensate for the lack of Cys-tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak activity against Cys-tRNA(Cys) and Gly- tRNA(Gly), as wel

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=157, Percent_Identity=56.687898089172, Blast_Score=176, Evalue=7e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 16298; Mature: 16167

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPAIAAAKKAKIWFAVHEYEHDPAAESFGKEAAEKLETDPARVFKTLVVAVSERDLAVM
CCCCHHHHHHCEEEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEH
VVPVLHQLDLKLAAKALGVKKAAMADVKQVERATGYVLGGVSPLGQKKRLPTVVDASAAE
HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCEEECCCCCH
HASVFVSGGRRGLDIELAPSDLCALTGGVFAPVAR
HHEEEEECCCCCCEEEECCHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TPAIAAAKKAKIWFAVHEYEHDPAAESFGKEAAEKLETDPARVFKTLVVAVSERDLAVM
CCCHHHHHHCEEEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEH
VVPVLHQLDLKLAAKALGVKKAAMADVKQVERATGYVLGGVSPLGQKKRLPTVVDASAAE
HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCEEECCCCCH
HASVFVSGGRRGLDIELAPSDLCALTGGVFAPVAR
HHEEEEECCCCCCEEEECCHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 3012467; 10493123 [H]