Click here to switch to the map view.

The map label for this gene is dcrA [H]

Identifier: 78355394

GI number: 78355394

Start: 335743

End: 337587

Strand: Direct

Name: dcrA [H]

Synonym: Dde_0347

Alternate gene names: 78355394

Gene position: 335743-337587 (Clockwise)

Preceding gene: 78355393

Following gene: 78355396

Centisome position: 9.0

GC content: 58.54

Gene sequence:

>1845_bases
GTGAGCTTTGCCGCATGGCCGTATCTTATTCGATTTCATCAGGGGAAGAACATGAGCATAAAGTGGAAAGTGCTGGCTGT
TGCGCTGCTGGGCCCTCTGGTTGTTGCATTGCTGATGGCTGTCAGCTGGGTAAGGGATATCCGGCACGGTGCCGAGGAAG
CCATACTGGAAAAAAGCCGCAGCATAGTGCTGATGGCAGAAGCCACACGCCACCAGATGGCGGTAAAGCTGAAGGACGGC
GTGGTTCGTCCGCTGGATGAATTGCCGTCTGACAAGGTCGTATCGGCTGTTCCGGTTGTTACTGCTATGCGCGCCGCAGC
GGAAAATGCCGAAAAAGCCGGCTATGAATTCCGCGTACCCAAGGTAAGCCCCAGAAATCCGGCAAACACGCCCACGCCTC
TTGAGCTGGAAGTTCTTGCCAAGCTTAAAAAAGAACAGCTTGATGAGTATGTTGTGCGAGAAGCCGATGCCATACGTTAT
TTCAGACCCGTCAGGCTGACGCAGGACTGCATGTTCTGCCACGGCGATCCCAAAGGATCCAAAGATCCTACCGGAGGCAT
ACGTGAAGGCTGGAAGGTCGGCAGCATCCACGGGGCGTTTCAGGTGATCAGTTCGCTGGAAGGCGTGCATGCCCGCGTGC
GCAGCGCGGCCATCGGGGTAGGAATTACCACCGTCGGCGTCCTGCTGGTGCTGGGGCTGCTTGCCCGGTATTTTCTGGGG
CGCAGTCTGCTTTCGCCTCTGGAGCGTCTGCGCGCGTATGCAGGTGCGGTGGCCGGTGGCGATCTGAAGGCCCGCCCCGA
GGGTAAATACGAGGCGGAACTTGCCCTGCTGCGTGATTCCATTGCATCCATGGTGGGCGATCTGCGTGATAAAATGGCCG
AATCTGCTGCGCGCACCGAAGAGGCAGCGCAACAGACACAGCGGGCTGAAGCGGCCATGGGCGAAGCCAAAGAGCAGGAG
GCGAAAGTGTCTGCCCTGCTGGAAAGCATGGCCCGTATTGCTTCGGAGGCCAAAGAGATAGCCGAGCAGGTGTCGCTGGC
TGCGCAGGCGCTTTCGGCGCAGGTGGACGAGGTTGCATCCGGTGCCGGAATTCAGTCTGCCCGCTCGCAGGAGACGGCTG
TGGCCATGGAGGAAATGAATGCCACGGTGCTGGAAGTGGCGCGTAATTCTGCAGAGTCCGCCGCCACTGCTGACGAAACC
CGCCATAAGGCGGCGGCAGGCGAGAATGTGGTGGAGCAGGTGGTAGCGTCCATCGCCCGTGTGAACAGCCGGGCGCAGAC
ATTGCGCGGCGAAATGGCCGGTCTGGGCAAACAGACGGAAGACATCAGCAGAATTATGGACGTTATCAGCGATATTGCCG
ACCAGACAAACCTGCTGGCCCTTAATGCAGCCATTGAGGCGGCCAGAGCGGGCGATGCCGGTCGCGGTTTTGCCGTGGTG
GCCGATGAGGTGCGCAAGCTTGCCGAAAAGACCATGCATGCCACCAAAGAAGTTGGTGATGCCATAGGGACTATTCAGAA
AAGTGCACATGATAATGTGGAGCATGTGGAAAACGCAGCCGGTGCCGCTGATGAAGCCACAGGTAAAGCGCGCGAAGCCG
GTGCCGCACTGAAGGAAATAGTGCGGCTGGCAGAGCATACGTCCGATCAGGTGCGTTCCATCGCCACAGCTGCGGAGCAG
CAGTCCGCGACCAGTGAAGAAATTAACAGAGCCGTGGATGAAATAAGTGCTGTGGCTACGGATACGGCGGAAGGCATGGA
TCAGGCCGCTGGCGCAGTGGCACGTCTGGCCGAGCTTGCTGCCCGGCTTGAAGAACTGATTGATGAGCTGAACAGCAGAA
AATAA

Upstream 100 bases:

>100_bases
CTTTACTGCAGACAGGGCACCATGTGTGCCCTTTTTTATTATCCTCTGCAGAAAACTTGTTCTGAGGTTATGCTTTCCCT
TGTCCTGCCGATAGAATAAA

Downstream 100 bases:

>100_bases
CGCTTTCTGAGAGTAACTGCTGAACAAACGGCCCGCCGCAAGGCGGGCCGTTCCCGTTCCCGTTCCCGTTCCCGTTCCCG
TTCCCGTTCCCGTTCCCGTT

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 614; Mature: 613

Protein sequence:

>614_residues
MSFAAWPYLIRFHQGKNMSIKWKVLAVALLGPLVVALLMAVSWVRDIRHGAEEAILEKSRSIVLMAEATRHQMAVKLKDG
VVRPLDELPSDKVVSAVPVVTAMRAAAENAEKAGYEFRVPKVSPRNPANTPTPLELEVLAKLKKEQLDEYVVREADAIRY
FRPVRLTQDCMFCHGDPKGSKDPTGGIREGWKVGSIHGAFQVISSLEGVHARVRSAAIGVGITTVGVLLVLGLLARYFLG
RSLLSPLERLRAYAGAVAGGDLKARPEGKYEAELALLRDSIASMVGDLRDKMAESAARTEEAAQQTQRAEAAMGEAKEQE
AKVSALLESMARIASEAKEIAEQVSLAAQALSAQVDEVASGAGIQSARSQETAVAMEEMNATVLEVARNSAESAATADET
RHKAAAGENVVEQVVASIARVNSRAQTLRGEMAGLGKQTEDISRIMDVISDIADQTNLLALNAAIEAARAGDAGRGFAVV
ADEVRKLAEKTMHATKEVGDAIGTIQKSAHDNVEHVENAAGAADEATGKAREAGAALKEIVRLAEHTSDQVRSIATAAEQ
QSATSEEINRAVDEISAVATDTAEGMDQAAGAVARLAELAARLEELIDELNSRK

Sequences:

>Translated_614_residues
MSFAAWPYLIRFHQGKNMSIKWKVLAVALLGPLVVALLMAVSWVRDIRHGAEEAILEKSRSIVLMAEATRHQMAVKLKDG
VVRPLDELPSDKVVSAVPVVTAMRAAAENAEKAGYEFRVPKVSPRNPANTPTPLELEVLAKLKKEQLDEYVVREADAIRY
FRPVRLTQDCMFCHGDPKGSKDPTGGIREGWKVGSIHGAFQVISSLEGVHARVRSAAIGVGITTVGVLLVLGLLARYFLG
RSLLSPLERLRAYAGAVAGGDLKARPEGKYEAELALLRDSIASMVGDLRDKMAESAARTEEAAQQTQRAEAAMGEAKEQE
AKVSALLESMARIASEAKEIAEQVSLAAQALSAQVDEVASGAGIQSARSQETAVAMEEMNATVLEVARNSAESAATADET
RHKAAAGENVVEQVVASIARVNSRAQTLRGEMAGLGKQTEDISRIMDVISDIADQTNLLALNAAIEAARAGDAGRGFAVV
ADEVRKLAEKTMHATKEVGDAIGTIQKSAHDNVEHVENAAGAADEATGKAREAGAALKEIVRLAEHTSDQVRSIATAAEQ
QSATSEEINRAVDEISAVATDTAEGMDQAAGAVARLAELAARLEELIDELNSRK
>Mature_613_residues
SFAAWPYLIRFHQGKNMSIKWKVLAVALLGPLVVALLMAVSWVRDIRHGAEEAILEKSRSIVLMAEATRHQMAVKLKDGV
VRPLDELPSDKVVSAVPVVTAMRAAAENAEKAGYEFRVPKVSPRNPANTPTPLELEVLAKLKKEQLDEYVVREADAIRYF
RPVRLTQDCMFCHGDPKGSKDPTGGIREGWKVGSIHGAFQVISSLEGVHARVRSAAIGVGITTVGVLLVLGLLARYFLGR
SLLSPLERLRAYAGAVAGGDLKARPEGKYEAELALLRDSIASMVGDLRDKMAESAARTEEAAQQTQRAEAAMGEAKEQEA
KVSALLESMARIASEAKEIAEQVSLAAQALSAQVDEVASGAGIQSARSQETAVAMEEMNATVLEVARNSAESAATADETR
HKAAAGENVVEQVVASIARVNSRAQTLRGEMAGLGKQTEDISRIMDVISDIADQTNLLALNAAIEAARAGDAGRGFAVVA
DEVRKLAEKTMHATKEVGDAIGTIQKSAHDNVEHVENAAGAADEATGKAREAGAALKEIVRLAEHTSDQVRSIATAAEQQ
SATSEEINRAVDEISAVATDTAEGMDQAAGAVARLAELAARLEELIDELNSRK

Specific function: Mediates Taxis To The Sugars Ribose And Galactose VIa An Interaction With The Periplasmic Ribose- Or Galactose-Binding Proteins. Chemotactic-Signal Transducers Respond To Changes In The Concentration Of Attractants And Repellents In The Environment, Trans

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787690, Length=268, Percent_Identity=33.5820895522388, Blast_Score=108, Evalue=7e-25,
Organism=Escherichia coli, GI2367378, Length=357, Percent_Identity=31.0924369747899, Blast_Score=108, Evalue=8e-25,
Organism=Escherichia coli, GI1788195, Length=347, Percent_Identity=27.3775216138329, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1788194, Length=299, Percent_Identity=30.1003344481605, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI1789453, Length=270, Percent_Identity=29.2592592592593, Blast_Score=89, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 65377; Mature: 65246

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFAAWPYLIRFHQGKNMSIKWKVLAVALLGPLVVALLMAVSWVRDIRHGAEEAILEKSR
CCCCCCHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SIVLMAEATRHQMAVKLKDGVVRPLDELPSDKVVSAVPVVTAMRAAAENAEKAGYEFRVP
CEEEEEEHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECC
KVSPRNPANTPTPLELEVLAKLKKEQLDEYVVREADAIRYFRPVRLTQDCMFCHGDPKGS
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
KDPTGGIREGWKVGSIHGAFQVISSLEGVHARVRSAAIGVGITTVGVLLVLGLLARYFLG
CCCCCCHHCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSLLSPLERLRAYAGAVAGGDLKARPEGKYEAELALLRDSIASMVGDLRDKMAESAARTE
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAAQQTQRAEAAMGEAKEQEAKVSALLESMARIASEAKEIAEQVSLAAQALSAQVDEVAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GAGIQSARSQETAVAMEEMNATVLEVARNSAESAATADETRHKAAAGENVVEQVVASIAR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
VNSRAQTLRGEMAGLGKQTEDISRIMDVISDIADQTNLLALNAAIEAARAGDAGRGFAVV
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHH
ADEVRKLAEKTMHATKEVGDAIGTIQKSAHDNVEHVENAAGAADEATGKAREAGAALKEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHCCHHHHHHHHHHHH
VRLAEHTSDQVRSIATAAEQQSATSEEINRAVDEISAVATDTAEGMDQAAGAVARLAELA
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARLEELIDELNSRK
HHHHHHHHHHHCCC
>Mature Secondary Structure 
SFAAWPYLIRFHQGKNMSIKWKVLAVALLGPLVVALLMAVSWVRDIRHGAEEAILEKSR
CCCCCHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SIVLMAEATRHQMAVKLKDGVVRPLDELPSDKVVSAVPVVTAMRAAAENAEKAGYEFRVP
CEEEEEEHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECC
KVSPRNPANTPTPLELEVLAKLKKEQLDEYVVREADAIRYFRPVRLTQDCMFCHGDPKGS
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
KDPTGGIREGWKVGSIHGAFQVISSLEGVHARVRSAAIGVGITTVGVLLVLGLLARYFLG
CCCCCCHHCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSLLSPLERLRAYAGAVAGGDLKARPEGKYEAELALLRDSIASMVGDLRDKMAESAARTE
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAAQQTQRAEAAMGEAKEQEAKVSALLESMARIASEAKEIAEQVSLAAQALSAQVDEVAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GAGIQSARSQETAVAMEEMNATVLEVARNSAESAATADETRHKAAAGENVVEQVVASIAR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
VNSRAQTLRGEMAGLGKQTEDISRIMDVISDIADQTNLLALNAAIEAARAGDAGRGFAVV
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHH
ADEVRKLAEKTMHATKEVGDAIGTIQKSAHDNVEHVENAAGAADEATGKAREAGAALKEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHCCHHHHHHHHHHHH
VRLAEHTSDQVRSIATAAEQQSATSEEINRAVDEISAVATDTAEGMDQAAGAVARLAELA
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARLEELIDELNSRK
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1548224 [H]