| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is nrdZ [H]
Identifier: 78355160
GI number: 78355160
Start: 104526
End: 106763
Strand: Direct
Name: nrdZ [H]
Synonym: Dde_0113
Alternate gene names: 78355160
Gene position: 104526-106763 (Clockwise)
Preceding gene: 78355159
Following gene: 78355161
Centisome position: 2.8
GC content: 56.3
Gene sequence:
>2238_bases ATGAAACAGCCGGAAGACTTGCAGCCCGTTGTGCTCAACCAGAATGCAGAGGTCGTGCTTTCGAAGCGTTATTACCGCAA AGGCCCTGACGGAGAACCGCTGGAAGATGCCACGGGGCTTTTCTGGCGTGTGGCGTCTGCCATCGCGGCGGAGGAGGGTA AATACCCTGATTCGTCGTGCAGGGCGGACGAACTGGCCCGTGAATTTTACGACCTGATGACATCGTGGAAATTTTTACCC AATTCTCCCACGCTGATGAATGCGGGCACTGATCTGGGTCAGCTGGCGGCCTGTTTTGTGCTGCCGGTGGGTGATTCCAT AGAAGAGATTTTTGACGCCGTGAAACATGCCGCCATGATTCATAAATCAGGAGGCGGAACAGGGTTTTCATTCTCGCGCC TGCGTCCGGCGGCCAGCCGTGTGGGGTCCACGGGCGGGGTTGCCTCGGGCCCGCTTTCTTTTTTACGCATTTTCAATACC GCCACGGAGCAGATTAAGCAGGGAGGCACACGCCGCGGGGCCAATATGGGCATTCTGCGTGTGGACCATCCGGACATTCT GGAGTTCATCCGCGCCAAGGAACGTGAAGGGGAATTCAATAACTTCAACCTTTCCGTTGCGCTGACCGAAGACTTTATGA AGGCGGTGGAAAAAGGTGAAGAATATCCTCTGATGGCGCCGCACTCCGGCGAAGCCAAAGGTACCCTGAATGCCCGTGAG GTGTTTGAGATACTGGTGCAGAAAGCGTGGGAGTCGGGGGATCCGGGCATTGTTTTCATTGACCGGATAAACCGTGACAA CCCCACGCCCGCACAGGGCGAGATGGAGTCCACAAACCCGTGCGGGGAGCAGCCACTGCTGCCTTACGAGGCCTGCAATC TCGGTTCCGTCAATCTGGCCGGACTGTACCTTGCGGGGCATGGCAGCACGGCAGATTCCATAGACTGGGCAGAGCTTAAG CGTATTATCAGGCTTTCCGTGCGTTTTCTGGATAATGTCATCGATGCTTCGCGCTATCCGCTGGACCGCATAACAGAAAC GGTGCACAGAAACCGCAAAATCGGGCTGGGCGTCATGGGCTGGGCCGACCTGCTGTTTCAGCTGCGCATTCCCTACGACA GTCAGGATGCCGTTAAGCTTGCCGGCCGTGTCATGGAATTCATCCGCGCGGAAGGCCGTGCCGCCTCCAAACAGCTTGCC AAGGAACGCGGACCCTTTCCGGCTTACGCCGAGTCAGTGTTCGGACAGCGGGACCTCGGACCATACCGCAACGCCACCAT AACGACCATTGCCCCCACCGGAACCCTGTCCATTCTTGCGGGATGCTCTTCCGGGGTTGAACCGTTGTTTGCGCTCAGCT TTGCGCGGCATGTCATGGACGGCGAGCGTCTGGTGGAAGTGAATCCTTATTTTGAGCAGGCGCTCAAGGACGAGCAGTGC TATTCTGAAAAGCTGATGGAAGCTGTAACGCAGAAAGGGTCTGTGCAGACAATGGAGCACCTGCCGCAGCATATGCGCGA TGTTTTTGTGACAGCCATGGACATAGAGCCCGTATGGCATCTGAAAATGCAGGCGGCGTTTCAGGAATATACCGACAACG CCGTGTCCAAGACCGTCAACCTGCCCAACAGCGCAACCATTGACGACATACGCAGCATTTACTGGATGGCGTATGAGCGG GGCTGCAAGGGGGTTACCGTATACCGTGACGGCTGCAAACAGTCGCAGGTTCTGTGCACCGGCGACGGAGAAAAAAGCAA GGAAGAGCAGAAAAAAGAACGCAGCGTTGTGCGTGAACGTCCTGATATCGTATACGGATTTACCCAGAAAGTGGAAACGG GGCTGGGTGTGCTGTATGTGACTATTAACGAAGTGGACGGAAGGCCGTTTGAACTGTTCACCACCATAGGCAAGTCGGGA CGGTCCATCACCGCAAAGGCGGAAGCCATCGGCAGACTGGTTTCGCTGGCGCTGCGCTCCGGCGTTGAGGTGGTGGAAAT AGTGCGGCAGCTCAAGGGTATAGGCGGAGAACACCCCAAGTTTCAGAAAAAAGGATTGCTGCTGTCCATACCCGATGCCA TTGCATGGGTAATGGAAAACAGGTACCTAAAGGCCAAGGTGCCCGTACACGCTCCCAACGGGCTCGGTAGGCAGCAGTGC CCCGATTGCGATGAAGAACTGGTGTTTCAGGAAGGCTGCCATATCTGCCCTGCCTGCGGATTCACCAAATGCGGCTGA
Upstream 100 bases:
>100_bases CGGCAGTGGCTTTTTCCGGCAGGGCATGCTAAGCTCCGTAGCAGGTAGTAAAAGTTGAGAAAAACTATAACCAATTGATT TGATACGTTAAAGGGATGAC
Downstream 100 bases:
>100_bases TACGCCGCGCACCATCAGCACAAACAGGGGGCCTTTGCGCCCCCTTTTTCCGTAGCGGAATCCACACATGCTTAACGCCC AGCATCTTTCCCATAATTTC
Product: ribonucleotide-diphosphate reductase subunit alpha
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 745; Mature: 745
Protein sequence:
>745_residues MKQPEDLQPVVLNQNAEVVLSKRYYRKGPDGEPLEDATGLFWRVASAIAAEEGKYPDSSCRADELAREFYDLMTSWKFLP NSPTLMNAGTDLGQLAACFVLPVGDSIEEIFDAVKHAAMIHKSGGGTGFSFSRLRPAASRVGSTGGVASGPLSFLRIFNT ATEQIKQGGTRRGANMGILRVDHPDILEFIRAKEREGEFNNFNLSVALTEDFMKAVEKGEEYPLMAPHSGEAKGTLNARE VFEILVQKAWESGDPGIVFIDRINRDNPTPAQGEMESTNPCGEQPLLPYEACNLGSVNLAGLYLAGHGSTADSIDWAELK RIIRLSVRFLDNVIDASRYPLDRITETVHRNRKIGLGVMGWADLLFQLRIPYDSQDAVKLAGRVMEFIRAEGRAASKQLA KERGPFPAYAESVFGQRDLGPYRNATITTIAPTGTLSILAGCSSGVEPLFALSFARHVMDGERLVEVNPYFEQALKDEQC YSEKLMEAVTQKGSVQTMEHLPQHMRDVFVTAMDIEPVWHLKMQAAFQEYTDNAVSKTVNLPNSATIDDIRSIYWMAYER GCKGVTVYRDGCKQSQVLCTGDGEKSKEEQKKERSVVRERPDIVYGFTQKVETGLGVLYVTINEVDGRPFELFTTIGKSG RSITAKAEAIGRLVSLALRSGVEVVEIVRQLKGIGGEHPKFQKKGLLLSIPDAIAWVMENRYLKAKVPVHAPNGLGRQQC PDCDEELVFQEGCHICPACGFTKCG
Sequences:
>Translated_745_residues MKQPEDLQPVVLNQNAEVVLSKRYYRKGPDGEPLEDATGLFWRVASAIAAEEGKYPDSSCRADELAREFYDLMTSWKFLP NSPTLMNAGTDLGQLAACFVLPVGDSIEEIFDAVKHAAMIHKSGGGTGFSFSRLRPAASRVGSTGGVASGPLSFLRIFNT ATEQIKQGGTRRGANMGILRVDHPDILEFIRAKEREGEFNNFNLSVALTEDFMKAVEKGEEYPLMAPHSGEAKGTLNARE VFEILVQKAWESGDPGIVFIDRINRDNPTPAQGEMESTNPCGEQPLLPYEACNLGSVNLAGLYLAGHGSTADSIDWAELK RIIRLSVRFLDNVIDASRYPLDRITETVHRNRKIGLGVMGWADLLFQLRIPYDSQDAVKLAGRVMEFIRAEGRAASKQLA KERGPFPAYAESVFGQRDLGPYRNATITTIAPTGTLSILAGCSSGVEPLFALSFARHVMDGERLVEVNPYFEQALKDEQC YSEKLMEAVTQKGSVQTMEHLPQHMRDVFVTAMDIEPVWHLKMQAAFQEYTDNAVSKTVNLPNSATIDDIRSIYWMAYER GCKGVTVYRDGCKQSQVLCTGDGEKSKEEQKKERSVVRERPDIVYGFTQKVETGLGVLYVTINEVDGRPFELFTTIGKSG RSITAKAEAIGRLVSLALRSGVEVVEIVRQLKGIGGEHPKFQKKGLLLSIPDAIAWVMENRYLKAKVPVHAPNGLGRQQC PDCDEELVFQEGCHICPACGFTKCG >Mature_745_residues MKQPEDLQPVVLNQNAEVVLSKRYYRKGPDGEPLEDATGLFWRVASAIAAEEGKYPDSSCRADELAREFYDLMTSWKFLP NSPTLMNAGTDLGQLAACFVLPVGDSIEEIFDAVKHAAMIHKSGGGTGFSFSRLRPAASRVGSTGGVASGPLSFLRIFNT ATEQIKQGGTRRGANMGILRVDHPDILEFIRAKEREGEFNNFNLSVALTEDFMKAVEKGEEYPLMAPHSGEAKGTLNARE VFEILVQKAWESGDPGIVFIDRINRDNPTPAQGEMESTNPCGEQPLLPYEACNLGSVNLAGLYLAGHGSTADSIDWAELK RIIRLSVRFLDNVIDASRYPLDRITETVHRNRKIGLGVMGWADLLFQLRIPYDSQDAVKLAGRVMEFIRAEGRAASKQLA KERGPFPAYAESVFGQRDLGPYRNATITTIAPTGTLSILAGCSSGVEPLFALSFARHVMDGERLVEVNPYFEQALKDEQC YSEKLMEAVTQKGSVQTMEHLPQHMRDVFVTAMDIEPVWHLKMQAAFQEYTDNAVSKTVNLPNSATIDDIRSIYWMAYER GCKGVTVYRDGCKQSQVLCTGDGEKSKEEQKKERSVVRERPDIVYGFTQKVETGLGVLYVTINEVDGRPFELFTTIGKSG RSITAKAEAIGRLVSLALRSGVEVVEIVRQLKGIGGEHPKFQKKGLLLSIPDAIAWVMENRYLKAKVPVHAPNGLGRQQC PDCDEELVFQEGCHICPACGFTKCG
Specific function: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides [H]
COG id: COG0209
COG function: function code F; Ribonucleotide reductase, alpha subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ATP-cone domain [H]
Homologues:
Organism=Homo sapiens, GI4506749, Length=603, Percent_Identity=26.5339966832504, Blast_Score=218, Evalue=2e-56, Organism=Escherichia coli, GI1789030, Length=573, Percent_Identity=25.6544502617801, Blast_Score=131, Evalue=2e-31, Organism=Escherichia coli, GI2367133, Length=497, Percent_Identity=22.5352112676056, Blast_Score=105, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17555242, Length=583, Percent_Identity=26.9296740994854, Blast_Score=216, Evalue=4e-56, Organism=Saccharomyces cerevisiae, GI6320914, Length=605, Percent_Identity=29.2561983471074, Blast_Score=229, Evalue=1e-60, Organism=Saccharomyces cerevisiae, GI6322123, Length=640, Percent_Identity=27.03125, Blast_Score=210, Evalue=6e-55, Organism=Drosophila melanogaster, GI17352481, Length=655, Percent_Identity=26.412213740458, Blast_Score=217, Evalue=2e-56,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005144 - InterPro: IPR013344 - InterPro: IPR013509 - InterPro: IPR000788 - InterPro: IPR008926 [H]
Pfam domain/function: PF03477 ATP-cone; PF02867 Ribonuc_red_lgC; PF00317 Ribonuc_red_lgN [H]
EC number: =1.17.4.1 [H]
Molecular weight: Translated: 82226; Mature: 82226
Theoretical pI: Translated: 5.86; Mature: 5.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQPEDLQPVVLNQNAEVVLSKRYYRKGPDGEPLEDATGLFWRVASAIAAEEGKYPDSSC CCCCCCCCCEEECCCCCEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC RADELAREFYDLMTSWKFLPNSPTLMNAGTDLGQLAACFVLPVGDSIEEIFDAVKHAAMI CHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHEEECCCCHHHHHHHHHHHHHH HKSGGGTGFSFSRLRPAASRVGSTGGVASGPLSFLRIFNTATEQIKQGGTRRGANMGILR CCCCCCCCCCHHHHCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE VDHPDILEFIRAKEREGEFNNFNLSVALTEDFMKAVEKGEEYPLMAPHSGEAKGTLNARE CCCHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHCCCCCCEECCCCCCCCCCCCHHH VFEILVQKAWESGDPGIVFIDRINRDNPTPAQGEMESTNPCGEQPLLPYEACNLGSVNLA HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCEEEE GLYLAGHGSTADSIDWAELKRIIRLSVRFLDNVIDASRYPLDRITETVHRNRKIGLGVMG EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEHHH WADLLFQLRIPYDSQDAVKLAGRVMEFIRAEGRAASKQLAKERGPFPAYAESVFGQRDLG HHHHHHEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHCCCCCCC PYRNATITTIAPTGTLSILAGCSSGVEPLFALSFARHVMDGERLVEVNPYFEQALKDEQC CCCCCEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHCHHHH YSEKLMEAVTQKGSVQTMEHLPQHMRDVFVTAMDIEPVWHLKMQAAFQEYTDNAVSKTVN HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC LPNSATIDDIRSIYWMAYERGCKGVTVYRDGCKQSQVLCTGDGEKSKEEQKKERSVVRER CCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHC PDIVYGFTQKVETGLGVLYVTINEVDGRPFELFTTIGKSGRSITAKAEAIGRLVSLALRS CCEEECHHHHHHCCCEEEEEEEECCCCCCHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHC GVEVVEIVRQLKGIGGEHPKFQKKGLLLSIPDAIAWVMENRYLKAKVPVHAPNGLGRQQC CCHHHHHHHHHHCCCCCCCCHHHCCCEEECHHHHHHHHHCCEEEEECCEECCCCCCCCCC PDCDEELVFQEGCHICPACGFTKCG CCCCHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure MKQPEDLQPVVLNQNAEVVLSKRYYRKGPDGEPLEDATGLFWRVASAIAAEEGKYPDSSC CCCCCCCCCEEECCCCCEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC RADELAREFYDLMTSWKFLPNSPTLMNAGTDLGQLAACFVLPVGDSIEEIFDAVKHAAMI CHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHEEECCCCHHHHHHHHHHHHHH HKSGGGTGFSFSRLRPAASRVGSTGGVASGPLSFLRIFNTATEQIKQGGTRRGANMGILR CCCCCCCCCCHHHHCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE VDHPDILEFIRAKEREGEFNNFNLSVALTEDFMKAVEKGEEYPLMAPHSGEAKGTLNARE CCCHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHCCCCCCEECCCCCCCCCCCCHHH VFEILVQKAWESGDPGIVFIDRINRDNPTPAQGEMESTNPCGEQPLLPYEACNLGSVNLA HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCEEEE GLYLAGHGSTADSIDWAELKRIIRLSVRFLDNVIDASRYPLDRITETVHRNRKIGLGVMG EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEHHH WADLLFQLRIPYDSQDAVKLAGRVMEFIRAEGRAASKQLAKERGPFPAYAESVFGQRDLG HHHHHHEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHCCCCCCC PYRNATITTIAPTGTLSILAGCSSGVEPLFALSFARHVMDGERLVEVNPYFEQALKDEQC CCCCCEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHCHHHH YSEKLMEAVTQKGSVQTMEHLPQHMRDVFVTAMDIEPVWHLKMQAAFQEYTDNAVSKTVN HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC LPNSATIDDIRSIYWMAYERGCKGVTVYRDGCKQSQVLCTGDGEKSKEEQKKERSVVRER CCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHC PDIVYGFTQKVETGLGVLYVTINEVDGRPFELFTTIGKSGRSITAKAEAIGRLVSLALRS CCEEECHHHHHHCCCEEEEEEEECCCCCCHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHC GVEVVEIVRQLKGIGGEHPKFQKKGLLLSIPDAIAWVMENRYLKAKVPVHAPNGLGRQQC CCHHHHHHHHHHCCCCCCCCHHHCCCEEECHHHHHHHHHCCEEEEECCEECCCCCCCCCC PDCDEELVFQEGCHICPACGFTKCG CCCCHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]