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The map label for this gene is tolR [H]

Identifier: 78224721

GI number: 78224721

Start: 3971978

End: 3972397

Strand: Direct

Name: tolR [H]

Synonym: Gmet_3538

Alternate gene names: 78224721

Gene position: 3971978-3972397 (Clockwise)

Preceding gene: 78224720

Following gene: 78224722

Centisome position: 99.36

GC content: 61.19

Gene sequence:

>420_bases
ATGGAAATCGGCAGCAGAAACAACGGCGACCGCGGCACCATGTCGCAGATCAACGTCACCCCTATGGTGGACGTGATGCT
CGTGCTCCTGGTCATCTTCATGGTTACGGCCCCCATGATGCAGCAGGGGGTCCAGGTGAACCTCCCCAAGGCGGAAACCA
AGGCCATGGCCACCCAGGAAGAGTCGGTGGTCGTCTCCATCGACCGAAGCGGCAAGGTCTTCATCAACGCCACGGAGGTG
GCTCCGGGGGACCTGAAGGGAAAGCTGACTTCCATGGTGGCCAACCGGACCAAGAAGGAGGTCTTCCTCAAGGCCGACCG
GGATGTCCCCTACGGAGATGTGGTGCGAACCATGGCTGAAATCAAGGGGGCCGGCATCGAGCGCCTCGGCATGGTGACGG
AGCCAGCCCCGACAAAATGA

Upstream 100 bases:

>100_bases
CCAGTACAAGATCAAGGTTCTTATCGCCACCATGGACAACTTCTCCACCGAGTTCCTGAATATCGTCCAGCGGACCGTGA
CCAAGAAGTAGGAGCAGACC

Downstream 100 bases:

>100_bases
GCCGTACCCGCCAACCGAGAGATACCGGGCTGGGGTGGGGGGTTGCCGCTTCCTGCGTCGTCCACGCCTCCGTCGCCGCC
TTTGTCCTCCTCCACCACTT

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MEIGSRNNGDRGTMSQINVTPMVDVMLVLLVIFMVTAPMMQQGVQVNLPKAETKAMATQEESVVVSIDRSGKVFINATEV
APGDLKGKLTSMVANRTKKEVFLKADRDVPYGDVVRTMAEIKGAGIERLGMVTEPAPTK

Sequences:

>Translated_139_residues
MEIGSRNNGDRGTMSQINVTPMVDVMLVLLVIFMVTAPMMQQGVQVNLPKAETKAMATQEESVVVSIDRSGKVFINATEV
APGDLKGKLTSMVANRTKKEVFLKADRDVPYGDVVRTMAEIKGAGIERLGMVTEPAPTK
>Mature_139_residues
MEIGSRNNGDRGTMSQINVTPMVDVMLVLLVIFMVTAPMMQQGVQVNLPKAETKAMATQEESVVVSIDRSGKVFINATEV
APGDLKGKLTSMVANRTKKEVFLKADRDVPYGDVVRTMAEIKGAGIERLGMVTEPAPTK

Specific function: Involved in the tonB-independent uptake of proteins [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=130, Percent_Identity=34.6153846153846, Blast_Score=85, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014168
- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15039; Mature: 15039

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.9 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
7.9 %Met     (Mature Protein)
7.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIGSRNNGDRGTMSQINVTPMVDVMLVLLVIFMVTAPMMQQGVQVNLPKAETKAMATQE
CCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHCCC
ESVVVSIDRSGKVFINATEVAPGDLKGKLTSMVANRTKKEVFLKADRDVPYGDVVRTMAE
CCEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHH
IKGAGIERLGMVTEPAPTK
HCCCCHHHHCCCCCCCCCC
>Mature Secondary Structure
MEIGSRNNGDRGTMSQINVTPMVDVMLVLLVIFMVTAPMMQQGVQVNLPKAETKAMATQE
CCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHCCC
ESVVVSIDRSGKVFINATEVAPGDLKGKLTSMVANRTKKEVFLKADRDVPYGDVVRTMAE
CCEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHH
IKGAGIERLGMVTEPAPTK
HCCCCHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8955385; 10984043 [H]