Click here to switch to the map view.

The map label for this gene is tnpA [H]

Identifier: 78224586

GI number: 78224586

Start: 3810050

End: 3811273

Strand: Direct

Name: tnpA [H]

Synonym: Gmet_3396

Alternate gene names: 78224586

Gene position: 3810050-3811273 (Clockwise)

Preceding gene: 78224585

Following gene: 78224587

Centisome position: 95.31

GC content: 55.31

Gene sequence:

>1224_bases
TTGTCGTATTCCGATGTTATCGCAATTGCGGGAGGGTGGGAAGGATATCGTGTTGCTGGGACACGCACTATCGTCACAGG
TGATGCCAAACGGATCGAGGTAGAACTGATTGCCCTGTCCCAGGATGAGATGGTGTGTGGCTCGTGCGGCGGGCGTTGCA
CAAGCGTCCATGAAACGACCAAGCGCGTAATTCGAGATTTGCCGATTCTCGATGCTCAGACTTATCTGATCGTTCACCGC
CGCAGGCTGCTGTGCCCTCAGTGTGGGCCAACGCTGGAGCGTCTGTCATGGCTGGCGAAATACGCCCGCGTGACGCGCAG
GCTTGCAGAGAGCGTAGCGCGACTGTGTGGTGTCGTGTCTGTGAAGCACGTGGCGCAGTATCTGGGGCTTTCTTGGGACC
AGGTGAAGGAAATCGACAAGCGCTCACTCACAGAGCGGGTCGGCACCGTCGACCTCTCAAACATCGAAGTTCTCGGGATG
GATGAGTTCGCCCTTCACAAGGGGCACCGCTATGCGACGGTTATCATCGAGCCATACCGTAAGGAAGTCTTATGGATCGG
CAAAGGCAGGAGTCGCGAGAGTATCCGTCCTTTCTTCACGCAGCTTGGCCCACATGGCTGTAAACGGCTCAAAGCGGTCG
TGATGGATATGAACGCATCATATGAGGAGGAAATCAAGCAGCACTCGCCCCAGGCAGACATAGTCTACGACCTGTTCCAT
GTGGTGGCGAAGTATGGCAGGGAAGTGATCGACAGGGTGCGAGTCGATGAGGCAAACCGCCTGAAGGAAGACAAGAAGGC
ACGGAAGGTAGTCAAAACATCGCGGTGGTTGCTGCTACGAAACAGCGAGAACGTCAAGGGCGACGACATGCTTCGCCTCC
AGGAACTGTTGGAGGCAAACCGCAGCCTCCTTACGGTCTACCTGCTCAAAGACGATCTGAAGCAACTGTGGAAGTTTACC
TGCATTGAAGAGGCGGGACTATTCTGGGAGCAGTGGCACCAAAGGGCGATGGAGAGTGGAATACCGCCACTCATCCTGTT
TGCCCGCCGGCTAAAGGGCTATCTCCAAGGAATCCTCAACCACTGCCTCTGGCCCCTTCACACCGGAATCCTCGAAGGCA
TCAATAACAAGATCAAGGTGATCAAAAGAATGGCCTACGGCTTCCGGGATCACGAATACTTCTTTCTCAAGATCAGAGCC
GCTTTCCCCGGAATTCCCGGATGA

Upstream 100 bases:

>100_bases
AGGTTCTTCAGGGAATTCCGGGGAAGATTAATAAACAACAACGGCAGCACTGCGGTATCTTGATGGTTCCCCAACCAAAA
AAGATCGCAGGAGGCTGCCG

Downstream 100 bases:

>100_bases
ACCAAAAGAAAGGGGTTGCGGCATCTGCCGTAACCCCTTGATCTTTTTATGGTCGGGGCGAGAAGATTCGAACTTCCGAC
CCCCTGCTCCCGAAGCAGGT

Product: IS204/IS1001/IS1096/IS1165 transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MSYSDVIAIAGGWEGYRVAGTRTIVTGDAKRIEVELIALSQDEMVCGSCGGRCTSVHETTKRVIRDLPILDAQTYLIVHR
RRLLCPQCGPTLERLSWLAKYARVTRRLAESVARLCGVVSVKHVAQYLGLSWDQVKEIDKRSLTERVGTVDLSNIEVLGM
DEFALHKGHRYATVIIEPYRKEVLWIGKGRSRESIRPFFTQLGPHGCKRLKAVVMDMNASYEEEIKQHSPQADIVYDLFH
VVAKYGREVIDRVRVDEANRLKEDKKARKVVKTSRWLLLRNSENVKGDDMLRLQELLEANRSLLTVYLLKDDLKQLWKFT
CIEEAGLFWEQWHQRAMESGIPPLILFARRLKGYLQGILNHCLWPLHTGILEGINNKIKVIKRMAYGFRDHEYFFLKIRA
AFPGIPG

Sequences:

>Translated_407_residues
MSYSDVIAIAGGWEGYRVAGTRTIVTGDAKRIEVELIALSQDEMVCGSCGGRCTSVHETTKRVIRDLPILDAQTYLIVHR
RRLLCPQCGPTLERLSWLAKYARVTRRLAESVARLCGVVSVKHVAQYLGLSWDQVKEIDKRSLTERVGTVDLSNIEVLGM
DEFALHKGHRYATVIIEPYRKEVLWIGKGRSRESIRPFFTQLGPHGCKRLKAVVMDMNASYEEEIKQHSPQADIVYDLFH
VVAKYGREVIDRVRVDEANRLKEDKKARKVVKTSRWLLLRNSENVKGDDMLRLQELLEANRSLLTVYLLKDDLKQLWKFT
CIEEAGLFWEQWHQRAMESGIPPLILFARRLKGYLQGILNHCLWPLHTGILEGINNKIKVIKRMAYGFRDHEYFFLKIRA
AFPGIPG
>Mature_406_residues
SYSDVIAIAGGWEGYRVAGTRTIVTGDAKRIEVELIALSQDEMVCGSCGGRCTSVHETTKRVIRDLPILDAQTYLIVHRR
RLLCPQCGPTLERLSWLAKYARVTRRLAESVARLCGVVSVKHVAQYLGLSWDQVKEIDKRSLTERVGTVDLSNIEVLGMD
EFALHKGHRYATVIIEPYRKEVLWIGKGRSRESIRPFFTQLGPHGCKRLKAVVMDMNASYEEEIKQHSPQADIVYDLFHV
VAKYGREVIDRVRVDEANRLKEDKKARKVVKTSRWLLLRNSENVKGDDMLRLQELLEANRSLLTVYLLKDDLKQLWKFTC
IEEAGLFWEQWHQRAMESGIPPLILFARRLKGYLQGILNHCLWPLHTGILEGINNKIKVIKRMAYGFRDHEYFFLKIRAA
FPGIPG

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG3464

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 12 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002560 [H]

Pfam domain/function: PF01610 Transposase_12 [H]

EC number: NA

Molecular weight: Translated: 46773; Mature: 46642

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYSDVIAIAGGWEGYRVAGTRTIVTGDAKRIEVELIALSQDEMVCGSCGGRCTSVHETT
CCCCCEEEEECCCCCEEEECCEEEEECCCCEEEEEEEEECCCCEECCCCCCCCCHHHHHH
KRVIRDLPILDAQTYLIVHRRRLLCPQCGPTLERLSWLAKYARVTRRLAESVARLCGVVS
HHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKHVAQYLGLSWDQVKEIDKRSLTERVGTVDLSNIEVLGMDEFALHKGHRYATVIIEPYR
HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEECCEEEECCCHHHHHCCCEEEEEEEECCC
KEVLWIGKGRSRESIRPFFTQLGPHGCKRLKAVVMDMNASYEEEIKQHSPQADIVYDLFH
CCEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHH
VVAKYGREVIDRVRVDEANRLKEDKKARKVVKTSRWLLLRNSENVKGDDMLRLQELLEAN
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCHHHHHHHHHHHCC
RSLLTVYLLKDDLKQLWKFTCIEEAGLFWEQWHQRAMESGIPPLILFARRLKGYLQGILN
HHEEEHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
HCLWPLHTGILEGINNKIKVIKRMAYGFRDHEYFFLKIRAAFPGIPG
HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCC
>Mature Secondary Structure 
SYSDVIAIAGGWEGYRVAGTRTIVTGDAKRIEVELIALSQDEMVCGSCGGRCTSVHETT
CCCCEEEEECCCCCEEEECCEEEEECCCCEEEEEEEEECCCCEECCCCCCCCCHHHHHH
KRVIRDLPILDAQTYLIVHRRRLLCPQCGPTLERLSWLAKYARVTRRLAESVARLCGVVS
HHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKHVAQYLGLSWDQVKEIDKRSLTERVGTVDLSNIEVLGMDEFALHKGHRYATVIIEPYR
HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEECCEEEECCCHHHHHCCCEEEEEEEECCC
KEVLWIGKGRSRESIRPFFTQLGPHGCKRLKAVVMDMNASYEEEIKQHSPQADIVYDLFH
CCEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHH
VVAKYGREVIDRVRVDEANRLKEDKKARKVVKTSRWLLLRNSENVKGDDMLRLQELLEAN
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCHHHHHHHHHHHCC
RSLLTVYLLKDDLKQLWKFTCIEEAGLFWEQWHQRAMESGIPPLILFARRLKGYLQGILN
HHEEEHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
HCLWPLHTGILEGINNKIKVIKRMAYGFRDHEYFFLKIRAAFPGIPG
HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8093238 [H]