Click here to switch to the map view.

The map label for this gene is fliR [H]

Identifier: 78224287

GI number: 78224287

Start: 3495941

End: 3496735

Strand: Reverse

Name: fliR [H]

Synonym: Gmet_3095

Alternate gene names: 78224287

Gene position: 3496735-3495941 (Counterclockwise)

Preceding gene: 78224288

Following gene: 78224286

Centisome position: 87.47

GC content: 59.12

Gene sequence:

>795_bases
ATGTTCCCCCTAACCACCCCATTCCCGTCGGTCAATGACGTCGCCTTCTTCGCCCTGGTGCTCGGGCGGATGGCCGGCAT
CTTCGCGGCCATCCCCCTGTTCGGCGGCCGGCGGGTGCCCATGAACATTAAGGTCCTGGCGATCTTCGCCCTGACGGTGG
TCTGCTTCCCTCTCATCAAGGCAAAAATCCCCCAGCTTCCCGCAGACATGCTCTCCCTCGGCATGCTCATGATCCGCGAG
GCCCTCGTGGGGACCTGTCTCGGCCTCCTCTCCCTCATCATCTTTGCCGCCGTCGAATTCTGCGGCCAGATCTGCGGCAT
CCAGATGGGGCTCTCCATCGTCAGTGAAATCGACCCTTCCCGGGGGAGCCAGTTGTCGATTATCTCCATCTTCCAGGAGA
TGTTCGCCACCCTCCTGTTTCTCTCCCTCAACGTCCACCATGTTTTCATCAACGCCCTGGTGGAGAGCTATGCCGTTCTC
CCCGTGGGGGCCTGGACCATGAGCGAAGGGCTTCTGAATTTCCTGGTCGTCACCATCGGCCAGGTATTCATCCTGGCCAT
CAAGCTGTCCGCGCCGATCATGGTGACCCTGCTCCTGACGAGCGTCATGCTCGGCATCATGGCCCGGGCGTTCCCCCAGA
TGAACGTCTTTTTCGTGAGTATGCCTCTCAATATCGGCATAGGCTTCATCATCCTCGGACTCTCACTGACGGTGTTTCTC
CATACCCTCCGGGGATCGTTCGGGGCGTTGGACGAGCAGATCATTGCTCTCATGAAACTTATGGGTAAGGGATAG

Upstream 100 bases:

>100_bases
CCAATATGAGGCATTGAAAGGCCGTAATGAGGGAGCAGGACCCCGTGCTCAGGTAACAGTTGTTACTGGTCCCCGGTCCC
CGGTCCCCGGTCCCTGACTT

Downstream 100 bases:

>100_bases
TGTCGGAAGAAGACAAGCATTCAAAAACAGAACAACCCACCCCGAAGAGACTGGATGAGGCGAAAAAGAAGGGGGTCCCC
CACAGCCGCGACCTCACCTC

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MFPLTTPFPSVNDVAFFALVLGRMAGIFAAIPLFGGRRVPMNIKVLAIFALTVVCFPLIKAKIPQLPADMLSLGMLMIRE
ALVGTCLGLLSLIIFAAVEFCGQICGIQMGLSIVSEIDPSRGSQLSIISIFQEMFATLLFLSLNVHHVFINALVESYAVL
PVGAWTMSEGLLNFLVVTIGQVFILAIKLSAPIMVTLLLTSVMLGIMARAFPQMNVFFVSMPLNIGIGFIILGLSLTVFL
HTLRGSFGALDEQIIALMKLMGKG

Sequences:

>Translated_264_residues
MFPLTTPFPSVNDVAFFALVLGRMAGIFAAIPLFGGRRVPMNIKVLAIFALTVVCFPLIKAKIPQLPADMLSLGMLMIRE
ALVGTCLGLLSLIIFAAVEFCGQICGIQMGLSIVSEIDPSRGSQLSIISIFQEMFATLLFLSLNVHHVFINALVESYAVL
PVGAWTMSEGLLNFLVVTIGQVFILAIKLSAPIMVTLLLTSVMLGIMARAFPQMNVFFVSMPLNIGIGFIILGLSLTVFL
HTLRGSFGALDEQIIALMKLMGKG
>Mature_264_residues
MFPLTTPFPSVNDVAFFALVLGRMAGIFAAIPLFGGRRVPMNIKVLAIFALTVVCFPLIKAKIPQLPADMLSLGMLMIRE
ALVGTCLGLLSLIIFAAVEFCGQICGIQMGLSIVSEIDPSRGSQLSIISIFQEMFATLLFLSLNVHHVFINALVESYAVL
PVGAWTMSEGLLNFLVVTIGQVFILAIKLSAPIMVTLLLTSVMLGIMARAFPQMNVFFVSMPLNIGIGFIILGLSLTVFL
HTLRGSFGALDEQIIALMKLMGKG

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=206, Percent_Identity=28.1553398058252, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28454; Mature: 28454

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
6.1 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
6.1 %Met     (Mature Protein)
7.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHCHHCCHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHCHHCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8299954; 9384377 [H]