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The map label for this gene is degT [H]

Identifier: 78188426

GI number: 78188426

Start: 525533

End: 526738

Strand: Reverse

Name: degT [H]

Synonym: Cag_0448

Alternate gene names: 78188426

Gene position: 526738-525533 (Counterclockwise)

Preceding gene: 78188430

Following gene: 78188425

Centisome position: 20.48

GC content: 48.18

Gene sequence:

>1206_bases
ATGTGCTGCCGAGATAGTACAGAAAAAAATGAAATGGTTGTTTATTTTGTGCGCTCTTATTCTTTCCATTTAGACCGACA
ACATATTATGCAATTTATTGATCTGCTCACCCAAAAAGAGCGCATTAAAGGCGCTTTGCTTCGCCGCTTTGAGGATATTC
TTGATCGCGGACAATTTATTATGGGTCCCGAAGTTACTGAGTTGGAAGCGCAACTTGCGGCGTATGCTGGCACGCGCCAT
TGCGTCTCGTGCTCGTCGGGCACCGATGCGCTCTTAATGCCGCTGTTAGCAAAAGGCATTGGCGCGGGTGATGCCGTTAT
TACCACACCATTTACCTTTGTTGCCACAGCGGAGGTTATCAATTTAGCGGGTGCAACGCCAATTTTTGTGGATGTGCTGC
CCAACACCTTCAACATCAATCCTGAGCTTATTGGCGAAGCAGTTGCAGAGGCAAAGCAAAAAGGGCTTCAGCCAAAAGCC
ATCATTCCCGTTGATTTGTTTGGCTTGCTTGCCGATTACGAACGCTTAAATGCCGTTGCTAATGAACACCATTTGTGGAT
TTTAGAAGATGCCTGCCAAAGTTTTGGGGGAAGTTTTAATGGAGGCAAAGCAGGAAGTTTTGGATTGGTTGGCGCAACCT
CATTTTTCCCTGCAAAACCGCTTGGTGGCTATGGCGATGGTGGCGCAATTTTTACCGATGATAGTGAGCTTGATATGCTG
CTGCGCTCGGTGCGGGTTCACGGCAGTGGTGCCGATAAGTACAGCAACGATCGCATTGGTATTAACGGACGGCTTGATTC
GTTGCAAGCGGCTGTGTTGCTGGAAAAATTGACCATTTTTGATGAAGAGCTTGCCACGCGCCAGAGCATTGCTGAAATCT
ACAATGAACGGCTTGATGAGCGTTTGGTCGTGCCAACCATCCCCGATGGCTACCGCTCAGCATGGGCACAATACTCGGTA
CTTGCCGCTTCGGCTGAGGAGCGCGATATGCTTATGCAAGCGTTGCAGCAAGAAGGCATTCCATCCATGATTTATTACAA
AATCCCGCTCCACCTCCAAAAAGCCTACCGCTCTCTTGGCTACAACACCAGCGACTTCCCCGTTTCGGAAGATTTAAGCC
GCCGCATTTTCTCTCTCCCTATGCACCCATATTTGAAGGATGAGGAGATTGAGCAAATTTGCACCGTTCTTTTGCAAACA
AAGTAA

Upstream 100 bases:

>100_bases
GAATGAGTAAAGAGATAGCACAAGGTATTCGATTCGATGTCATTCCCGCTTGCGCGGGAATGACGAAAGAGAGTTACTCA
TGAATAATTCAGGATAGATG

Downstream 100 bases:

>100_bases
GCTGATAAGAGAAGATGCGCTACCTTTTTGTTCACCAAAATTTTCCCGGGCAGTTCAAATTTCTTGCCCCAACATTAGCC
GCTAATAAGAGCAACAAAGT

Product: DegT/DnrJ/EryC1/StrS family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MCCRDSTEKNEMVVYFVRSYSFHLDRQHIMQFIDLLTQKERIKGALLRRFEDILDRGQFIMGPEVTELEAQLAAYAGTRH
CVSCSSGTDALLMPLLAKGIGAGDAVITTPFTFVATAEVINLAGATPIFVDVLPNTFNINPELIGEAVAEAKQKGLQPKA
IIPVDLFGLLADYERLNAVANEHHLWILEDACQSFGGSFNGGKAGSFGLVGATSFFPAKPLGGYGDGGAIFTDDSELDML
LRSVRVHGSGADKYSNDRIGINGRLDSLQAAVLLEKLTIFDEELATRQSIAEIYNERLDERLVVPTIPDGYRSAWAQYSV
LAASAEERDMLMQALQQEGIPSMIYYKIPLHLQKAYRSLGYNTSDFPVSEDLSRRIFSLPMHPYLKDEEIEQICTVLLQT
K

Sequences:

>Translated_401_residues
MCCRDSTEKNEMVVYFVRSYSFHLDRQHIMQFIDLLTQKERIKGALLRRFEDILDRGQFIMGPEVTELEAQLAAYAGTRH
CVSCSSGTDALLMPLLAKGIGAGDAVITTPFTFVATAEVINLAGATPIFVDVLPNTFNINPELIGEAVAEAKQKGLQPKA
IIPVDLFGLLADYERLNAVANEHHLWILEDACQSFGGSFNGGKAGSFGLVGATSFFPAKPLGGYGDGGAIFTDDSELDML
LRSVRVHGSGADKYSNDRIGINGRLDSLQAAVLLEKLTIFDEELATRQSIAEIYNERLDERLVVPTIPDGYRSAWAQYSV
LAASAEERDMLMQALQQEGIPSMIYYKIPLHLQKAYRSLGYNTSDFPVSEDLSRRIFSLPMHPYLKDEEIEQICTVLLQT
K
>Mature_401_residues
MCCRDSTEKNEMVVYFVRSYSFHLDRQHIMQFIDLLTQKERIKGALLRRFEDILDRGQFIMGPEVTELEAQLAAYAGTRH
CVSCSSGTDALLMPLLAKGIGAGDAVITTPFTFVATAEVINLAGATPIFVDVLPNTFNINPELIGEAVAEAKQKGLQPKA
IIPVDLFGLLADYERLNAVANEHHLWILEDACQSFGGSFNGGKAGSFGLVGATSFFPAKPLGGYGDGGAIFTDDSELDML
LRSVRVHGSGADKYSNDRIGINGRLDSLQAAVLLEKLTIFDEELATRQSIAEIYNERLDERLVVPTIPDGYRSAWAQYSV
LAASAEERDMLMQALQQEGIPSMIYYKIPLHLQKAYRSLGYNTSDFPVSEDLSRRIFSLPMHPYLKDEEIEQICTVLLQT
K

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=371, Percent_Identity=30.4582210242588, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI2367285, Length=318, Percent_Identity=29.2452830188679, Blast_Score=123, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 44331; Mature: 44331

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCCRDSTEKNEMVVYFVRSYSFHLDRQHIMQFIDLLTQKERIKGALLRRFEDILDRGQFI
CCCCCCCCCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
MGPEVTELEAQLAAYAGTRHCVSCSSGTDALLMPLLAKGIGAGDAVITTPFTFVATAEVI
ECCCHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHH
NLAGATPIFVDVLPNTFNINPELIGEAVAEAKQKGLQPKAIIPVDLFGLLADYERLNAVA
HHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHH
NEHHLWILEDACQSFGGSFNGGKAGSFGLVGATSFFPAKPLGGYGDGGAIFTDDSELDML
CCCCEEEEHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCHHHHHH
LRSVRVHGSGADKYSNDRIGINGRLDSLQAAVLLEKLTIFDEELATRQSIAEIYNERLDE
HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RLVVPTIPDGYRSAWAQYSVLAASAEERDMLMQALQQEGIPSMIYYKIPLHLQKAYRSLG
EEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHC
YNTSDFPVSEDLSRRIFSLPMHPYLKDEEIEQICTVLLQTK
CCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MCCRDSTEKNEMVVYFVRSYSFHLDRQHIMQFIDLLTQKERIKGALLRRFEDILDRGQFI
CCCCCCCCCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
MGPEVTELEAQLAAYAGTRHCVSCSSGTDALLMPLLAKGIGAGDAVITTPFTFVATAEVI
ECCCHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHH
NLAGATPIFVDVLPNTFNINPELIGEAVAEAKQKGLQPKAIIPVDLFGLLADYERLNAVA
HHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHH
NEHHLWILEDACQSFGGSFNGGKAGSFGLVGATSFFPAKPLGGYGDGGAIFTDDSELDML
CCCCEEEEHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCHHHHHH
LRSVRVHGSGADKYSNDRIGINGRLDSLQAAVLLEKLTIFDEELATRQSIAEIYNERLDE
HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RLVVPTIPDGYRSAWAQYSVLAASAEERDMLMQALQQEGIPSMIYYKIPLHLQKAYRSLG
EEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHC
YNTSDFPVSEDLSRRIFSLPMHPYLKDEEIEQICTVLLQTK
CCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]