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The map label for this gene is nusB

Identifier: 78188395

GI number: 78188395

Start: 488614

End: 489123

Strand: Reverse

Name: nusB

Synonym: Cag_0417

Alternate gene names: 78188395

Gene position: 489123-488614 (Counterclockwise)

Preceding gene: 78188396

Following gene: 78188394

Centisome position: 19.02

GC content: 38.43

Gene sequence:

>510_bases
ATGAAGACCTACCGTCGGCAAATACGCGAAAAAATTTTACAAGCCCTTTACACCGTTGAACTGCGAGGAATTACGCTTGA
TGAAGCGGCTGGCTGGCTTTTAACCGAAGAAATTCTTGCCGACCCCAATGCTATGAAGTTCTTTAACCTCCTTTTAAGTA
GCATTAAAGCACATCGGGAAGAAATTGATAACTACATTGCCCAGCAAACCTTTAATTGGGATATGAGCCGCATCGCTATT
ATTGATAAAAATATTATCCGTATGGCGCTCACCGAAATTCTTTATTGCGAAGATATTCCACCAAAAGTTTCCATTAACGA
AGCTATTGAAATTGCTAAAAAATTTAATAGCACCGATAAAAGCAGTAAGTTTGTGAATGGTATTCTTGATGCCATTTTCA
ATAAACTAAAAACTGAAGGTAAAGTGCATAAAAATGGACGTGGGTTAATTGATCAATCATTCAGCCGCCCACAAAAGCCT
GAGAGTGAAGCAACCGAGATAGAAGAATAA

Upstream 100 bases:

>100_bases
AAGCCCATGAACCGCATCTGCTCTACCACAACTTTAGCGACACACAAGCCGTACTTAACGATATTCTCTCCCATTAATTT
TCCACTACTGATTGCTTTTT

Downstream 100 bases:

>100_bases
CATTGCTATGAACCCTCAAGAAAAAATTATAGCCTTGCACGATTTGCTTAGCAAGCAATTTCCCAATCCTAAAAGCGAAT
TGGAATATCTTTCGCCATTT

Product: NusB antitermination factor

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MKTYRRQIREKILQALYTVELRGITLDEAAGWLLTEEILADPNAMKFFNLLLSSIKAHREEIDNYIAQQTFNWDMSRIAI
IDKNIIRMALTEILYCEDIPPKVSINEAIEIAKKFNSTDKSSKFVNGILDAIFNKLKTEGKVHKNGRGLIDQSFSRPQKP
ESEATEIEE

Sequences:

>Translated_169_residues
MKTYRRQIREKILQALYTVELRGITLDEAAGWLLTEEILADPNAMKFFNLLLSSIKAHREEIDNYIAQQTFNWDMSRIAI
IDKNIIRMALTEILYCEDIPPKVSINEAIEIAKKFNSTDKSSKFVNGILDAIFNKLKTEGKVHKNGRGLIDQSFSRPQKP
ESEATEIEE
>Mature_169_residues
MKTYRRQIREKILQALYTVELRGITLDEAAGWLLTEEILADPNAMKFFNLLLSSIKAHREEIDNYIAQQTFNWDMSRIAI
IDKNIIRMALTEILYCEDIPPKVSINEAIEIAKKFNSTDKSSKFVNGILDAIFNKLKTEGKVHKNGRGLIDQSFSRPQKP
ESEATEIEE

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=121, Percent_Identity=33.0578512396694, Blast_Score=63, Evalue=8e-12,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_CHLCH (Q3ATI5)

Other databases:

- EMBL:   CP000108
- RefSeq:   YP_378733.1
- ProteinModelPortal:   Q3ATI5
- SMR:   Q3ATI5
- STRING:   Q3ATI5
- GeneID:   3747683
- GenomeReviews:   CP000108_GR
- KEGG:   cch:Cag_0417
- eggNOG:   COG0781
- HOGENOM:   HBG734409
- OMA:   MKTYRRQ
- ProtClustDB:   CLSK637901
- BioCyc:   CCHL340177:CAG_0417-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 19448; Mature: 19448

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTYRRQIREKILQALYTVELRGITLDEAAGWLLTEEILADPNAMKFFNLLLSSIKAHRE
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
EIDNYIAQQTFNWDMSRIAIIDKNIIRMALTEILYCEDIPPKVSINEAIEIAKKFNSTDK
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCH
SSKFVNGILDAIFNKLKTEGKVHKNGRGLIDQSFSRPQKPESEATEIEE
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKTYRRQIREKILQALYTVELRGITLDEAAGWLLTEEILADPNAMKFFNLLLSSIKAHRE
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
EIDNYIAQQTFNWDMSRIAIIDKNIIRMALTEILYCEDIPPKVSINEAIEIAKKFNSTDK
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCH
SSKFVNGILDAIFNKLKTEGKVHKNGRGLIDQSFSRPQKPESEATEIEE
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA