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The map label for this gene is yebA [C]

Identifier: 78188161

GI number: 78188161

Start: 198984

End: 199949

Strand: Reverse

Name: yebA [C]

Synonym: Cag_0178

Alternate gene names: 78188161

Gene position: 199949-198984 (Counterclockwise)

Preceding gene: 78188162

Following gene: 78188160

Centisome position: 7.77

GC content: 47.31

Gene sequence:

>966_bases
ATGGCTCTTTGCTCTCAACAAGATTTCCCTATATTCGCCAAAATTAAGAGCATTGCTTATCACTACCTTTTTAGCTTGTC
TATGAACAAGAGGGTTGTCATTCCCGCGAAAGCGGGAATCCATACATGCAACAAGTGCAATGGATTGCCACGTCGGCTGC
GCCTCCTCAATATTCCCCTCCATTGGAGGGGTGGCAGGCGAAGCCTGACGGGGTGGTTGACGAAAAGTGCGATGGATTGC
TTCACTTCGTTCGCAATGACTGTTTGGGGTACGTCGGTGGTAACCGAACGGCGGCGCCTCCTCTCAATAATGGTGGCGTT
GGGGAGCATTGTGCCAATTCATAAAGCTGCAACGCTCTATGGGGCTGAAAAACAGAACTTGCAAGCCGCATTACTGCCCG
AACAAGCGGGGCAAATGATTGAAGAGTTAGTATTTGCGCTTGAACCTGAAGAGGGGGCTGCAACTGAAAAGGGTGAATTA
ACCGATAACGTAGCACCCACCTCCTCGCTGTTTGCAAGTATTCCAAATATTAAACCTGTTTATGGTACACTAAGCAGCTT
ATTTGGAATGCGAATGCACCCCATTTACAACATGCCGCTCTTTCACTCAGGCATTGATATTGCTGCACCAATTGGCACCA
AAGTGCATGCTACGGGTGATGGCATTGTGGCGTTTGTGGGCAACAGTAAAGGGTATGGGCAAAAAATTACCATTAATCAT
GGTTATGGCTATAAAACCATTTATGCACACCTCTCAAAAATGGTAGTGCAACAAGGCGATAACGTGCGGCGTGGCGACAC
AATTGGTTTAAGTGGTAACAGCGGCACCTCCACCGGAGCGCATTTGCACTACGAAGTGTTGCGTTACAACCAACGCCTTG
ATCCTTCAGCATTTTACTTTGAAGAGCATGGCGCTCGAAAGTTTACCGCAATTCAATCAAAACAATCACCTAAGGATAAC
TCGTAA

Upstream 100 bases:

>100_bases
GGAAAAAATTGGCTTGAAGCCCATTGAAATGATAGGTATTCGGCGCTGCACGCAAAGCGCATCGTGAAGCGCCCTTCGAG
AGTTAGAAACAAATTTTTCA

Downstream 100 bases:

>100_bases
CATAAAAAGACAAATAAAACCGCAACTTATGTATTGGAATCTTGAACTTGCTCGCTATATCGCTGATGCACCATGGCCTG
TTACTAAGGATGAGCTTATT

Product: membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 320

Protein sequence:

>321_residues
MALCSQQDFPIFAKIKSIAYHYLFSLSMNKRVVIPAKAGIHTCNKCNGLPRRLRLLNIPLHWRGGRRSLTGWLTKSAMDC
FTSFAMTVWGTSVVTERRRLLSIMVALGSIVPIHKAATLYGAEKQNLQAALLPEQAGQMIEELVFALEPEEGAATEKGEL
TDNVAPTSSLFASIPNIKPVYGTLSSLFGMRMHPIYNMPLFHSGIDIAAPIGTKVHATGDGIVAFVGNSKGYGQKITINH
GYGYKTIYAHLSKMVVQQGDNVRRGDTIGLSGNSGTSTGAHLHYEVLRYNQRLDPSAFYFEEHGARKFTAIQSKQSPKDN
S

Sequences:

>Translated_321_residues
MALCSQQDFPIFAKIKSIAYHYLFSLSMNKRVVIPAKAGIHTCNKCNGLPRRLRLLNIPLHWRGGRRSLTGWLTKSAMDC
FTSFAMTVWGTSVVTERRRLLSIMVALGSIVPIHKAATLYGAEKQNLQAALLPEQAGQMIEELVFALEPEEGAATEKGEL
TDNVAPTSSLFASIPNIKPVYGTLSSLFGMRMHPIYNMPLFHSGIDIAAPIGTKVHATGDGIVAFVGNSKGYGQKITINH
GYGYKTIYAHLSKMVVQQGDNVRRGDTIGLSGNSGTSTGAHLHYEVLRYNQRLDPSAFYFEEHGARKFTAIQSKQSPKDN
S
>Mature_320_residues
ALCSQQDFPIFAKIKSIAYHYLFSLSMNKRVVIPAKAGIHTCNKCNGLPRRLRLLNIPLHWRGGRRSLTGWLTKSAMDCF
TSFAMTVWGTSVVTERRRLLSIMVALGSIVPIHKAATLYGAEKQNLQAALLPEQAGQMIEELVFALEPEEGAATEKGELT
DNVAPTSSLFASIPNIKPVYGTLSSLFGMRMHPIYNMPLFHSGIDIAAPIGTKVHATGDGIVAFVGNSKGYGQKITINHG
YGYKTIYAHLSKMVVQQGDNVRRGDTIGLSGNSGTSTGAHLHYEVLRYNQRLDPSAFYFEEHGARKFTAIQSKQSPKDNS

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M23B family [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=130, Percent_Identity=40.7692307692308, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI87082174, Length=106, Percent_Identity=36.7924528301887, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1789099, Length=95, Percent_Identity=37.8947368421053, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886 [H]

Pfam domain/function: PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 35231; Mature: 35100

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALCSQQDFPIFAKIKSIAYHYLFSLSMNKRVVIPAKAGIHTCNKCNGLPRRLRLLNIPL
CCCCCCCCCCHHHHHHHHHHHHHHEECCCCEEEEECCCCCCCCHHCCCCCCEEEEEECCE
HWRGGRRSLTGWLTKSAMDCFTSFAMTVWGTSVVTERRRLLSIMVALGSIVPIHKAATLY
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHC
GAEKQNLQAALLPEQAGQMIEELVFALEPEEGAATEKGELTDNVAPTSSLFASIPNIKPV
CCCHHCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHH
YGTLSSLFGMRMHPIYNMPLFHSGIDIAAPIGTKVHATGDGIVAFVGNSKGYGQKITINH
HHHHHHHHCCCCCCEECCCEEECCCCEEECCCCEEEECCCCEEEEEECCCCCCEEEEEEC
GYGYKTIYAHLSKMVVQQGDNVRRGDTIGLSGNSGTSTGAHLHYEVLRYNQRLDPSAFYF
CCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEHHHHHHCCCCCCCCEEH
EEHGARKFTAIQSKQSPKDNS
HHCCCEEEEEECCCCCCCCCC
>Mature Secondary Structure 
ALCSQQDFPIFAKIKSIAYHYLFSLSMNKRVVIPAKAGIHTCNKCNGLPRRLRLLNIPL
CCCCCCCCCHHHHHHHHHHHHHHEECCCCEEEEECCCCCCCCHHCCCCCCEEEEEECCE
HWRGGRRSLTGWLTKSAMDCFTSFAMTVWGTSVVTERRRLLSIMVALGSIVPIHKAATLY
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHC
GAEKQNLQAALLPEQAGQMIEELVFALEPEEGAATEKGELTDNVAPTSSLFASIPNIKPV
CCCHHCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHH
YGTLSSLFGMRMHPIYNMPLFHSGIDIAAPIGTKVHATGDGIVAFVGNSKGYGQKITINH
HHHHHHHHCCCCCCEECCCEEECCCCEEECCCCEEEECCCCEEEEEECCCCCCEEEEEEC
GYGYKTIYAHLSKMVVQQGDNVRRGDTIGLSGNSGTSTGAHLHYEVLRYNQRLDPSAFYF
CCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEHHHHHHCCCCCCCCEEH
EEHGARKFTAIQSKQSPKDNS
HHCCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12522265 [H]