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The map label for this gene is yddE [C]

Identifier: 78067161

GI number: 78067161

Start: 2798128

End: 2799009

Strand: Direct

Name: yddE [C]

Synonym: Bcep18194_A5692

Alternate gene names: 78067161

Gene position: 2798128-2799009 (Clockwise)

Preceding gene: 78067160

Following gene: 78067162

Centisome position: 75.75

GC content: 70.52

Gene sequence:

>882_bases
ATGTCCGGTCATCGGGTCCGCTTCAAGCAGGTCGACGTGTTCACGGCGGTGCCGTTCAAGGGCAACGCGCTCGCCGTGGT
GTTCGACGCCGATTCGCTCGGCGACGACGACATGCTCGCGATCGCCCGCTGGACGAACCTGTCGGAAACGACGTTCCTCT
GCACGCCGACCGATCCGGAAGCCGACTACCGCGTCCGGATCTTCACGACGGAAGGCGAACTGCCGTTCGCCGGCCACCCG
ACGCTGGGCACCGCGCATGCGTTCCTGGAAAACGGCGCCCGACCGCGCACGCCGGGCCGGCTGATCCAGCAGTGCGGGGT
CGGCCGGGTCGCGCTGCGCGAGCAGGCCGACGGCTGGGCGTTCGCCGCGCCGCCGGCACGCGTCACACCGCTCGACCGTT
CGGACTACGCGGCGCTGGCTGCCGCGTTGCGCAGCGACGCGATCGACCTGGATGCCGAGCCGTGCGCGGTCGACAACGGC
GCACCGTGGCTGGTCGTGCGACTGCAGTCGGCCGATGCTTGCATCGGCCTGACGCCCGATCCGGCTTTGCTGGAGGCGCT
CACACGCCGCTACGGCACGGACGGCGTCGCGGTCTACGCGCCACACGCCGAAGGCGGCCCCGCGACGTTCGAAATCCGCT
GCCTGATGACGGGCGGCAACTTCGGCTTCGGCGAGGATCCCGTCACCGGCAGCGCAAACGCCGCGCTCGCCGGGCTGCTG
ACGCGGCAGGAACGCCGCCCCGGCCAGTCGTATACGGCCCGCCAGGGTACGGCGATCGGCCGCGACGGCCGTATCTTCGT
CAGCTATGACGAAGACGGCACCACATGGATCGGCGGCCACGTCGTCACGGTCGTCGACGGCACCTTCCTGTCACCTGCCT
GA

Upstream 100 bases:

>100_bases
GGCAAGCACGCGCGCTCGGCATTCGGCGTGGCACAGATCCCGCTCGGCGCGTGCGTCGAGATCGAGCTGATCGCCGAAGT
TGCGTAACGGACGCACCGCG

Downstream 100 bases:

>100_bases
CATTTCGCGATGTGCGATGGCGCCGGCCCGTCCGGCGCCCCCTACGATTCGCCCAACTATCGCAAAAACGTTCCAGCCAG
TAATATCGGGCCTAATCCGT

Product: phenazine biosynthesis PhzC/PhzF protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MSGHRVRFKQVDVFTAVPFKGNALAVVFDADSLGDDDMLAIARWTNLSETTFLCTPTDPEADYRVRIFTTEGELPFAGHP
TLGTAHAFLENGARPRTPGRLIQQCGVGRVALREQADGWAFAAPPARVTPLDRSDYAALAAALRSDAIDLDAEPCAVDNG
APWLVVRLQSADACIGLTPDPALLEALTRRYGTDGVAVYAPHAEGGPATFEIRCLMTGGNFGFGEDPVTGSANAALAGLL
TRQERRPGQSYTARQGTAIGRDGRIFVSYDEDGTTWIGGHVVTVVDGTFLSPA

Sequences:

>Translated_293_residues
MSGHRVRFKQVDVFTAVPFKGNALAVVFDADSLGDDDMLAIARWTNLSETTFLCTPTDPEADYRVRIFTTEGELPFAGHP
TLGTAHAFLENGARPRTPGRLIQQCGVGRVALREQADGWAFAAPPARVTPLDRSDYAALAAALRSDAIDLDAEPCAVDNG
APWLVVRLQSADACIGLTPDPALLEALTRRYGTDGVAVYAPHAEGGPATFEIRCLMTGGNFGFGEDPVTGSANAALAGLL
TRQERRPGQSYTARQGTAIGRDGRIFVSYDEDGTTWIGGHVVTVVDGTFLSPA
>Mature_292_residues
SGHRVRFKQVDVFTAVPFKGNALAVVFDADSLGDDDMLAIARWTNLSETTFLCTPTDPEADYRVRIFTTEGELPFAGHPT
LGTAHAFLENGARPRTPGRLIQQCGVGRVALREQADGWAFAAPPARVTPLDRSDYAALAAALRSDAIDLDAEPCAVDNGA
PWLVVRLQSADACIGLTPDPALLEALTRRYGTDGVAVYAPHAEGGPATFEIRCLMTGGNFGFGEDPVTGSANAALAGLLT
RQERRPGQSYTARQGTAIGRDGRIFVSYDEDGTTWIGGHVVTVVDGTFLSPA

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Escherichia coli, GI1787737, Length=268, Percent_Identity=30.5970149253731, Blast_Score=95, Evalue=6e-21,
Organism=Saccharomyces cerevisiae, GI6321818, Length=297, Percent_Identity=35.6902356902357, Blast_Score=169, Evalue=7e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 31137; Mature: 31006

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGHRVRFKQVDVFTAVPFKGNALAVVFDADSLGDDDMLAIARWTNLSETTFLCTPTDPE
CCCCEEEEEEEEEEEECCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCCEEEECCCCCC
ADYRVRIFTTEGELPFAGHPTLGTAHAFLENGARPRTPGRLIQQCGVGRVALREQADGWA
CCEEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCEEEEEECCCCEE
FAAPPARVTPLDRSDYAALAAALRSDAIDLDAEPCAVDNGAPWLVVRLQSADACIGLTPD
EECCCCEECCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCEEEEEEECCCEEEECCCC
PALLEALTRRYGTDGVAVYAPHAEGGPATFEIRCLMTGGNFGFGEDPVTGSANAALAGLL
HHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHH
TRQERRPGQSYTARQGTAIGRDGRIFVSYDEDGTTWIGGHVVTVVDGTFLSPA
HHHHCCCCCCCCCCCCCEECCCCEEEEEECCCCCEEECCEEEEEEECEECCCC
>Mature Secondary Structure 
SGHRVRFKQVDVFTAVPFKGNALAVVFDADSLGDDDMLAIARWTNLSETTFLCTPTDPE
CCCEEEEEEEEEEEECCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCCEEEECCCCCC
ADYRVRIFTTEGELPFAGHPTLGTAHAFLENGARPRTPGRLIQQCGVGRVALREQADGWA
CCEEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCEEEEEECCCCEE
FAAPPARVTPLDRSDYAALAAALRSDAIDLDAEPCAVDNGAPWLVVRLQSADACIGLTPD
EECCCCEECCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCEEEEEEECCCEEEECCCC
PALLEALTRRYGTDGVAVYAPHAEGGPATFEIRCLMTGGNFGFGEDPVTGSANAALAGLL
HHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHH
TRQERRPGQSYTARQGTAIGRDGRIFVSYDEDGTTWIGGHVVTVVDGTFLSPA
HHHHCCCCCCCCCCCCCEECCCCEEEEEECCCCCEEECCEEEEEEECEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]