Definition | Burkholderia sp. 383 chromosome 1, complete genome. |
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Accession | NC_007510 |
Length | 3,694,126 |
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The map label for this gene is 78067113
Identifier: 78067113
GI number: 78067113
Start: 2741399
End: 2742625
Strand: Direct
Name: 78067113
Synonym: Bcep18194_A5644
Alternate gene names: NA
Gene position: 2741399-2742625 (Clockwise)
Preceding gene: 78067112
Following gene: 78067114
Centisome position: 74.21
GC content: 74.25
Gene sequence:
>1227_bases ATGGATACGCCGACCACTCATCAGGCAGGACTCCGAATGATCATGATCGCGGCTGGCGTCGCAGCGCTGGTGTCGCTGTC CGCGTGCGGCGGCTCCGGCTCGCTGAGCCAGGGCACCGGCGGCACCGGATCGGGTTCGGGCGACACGACGGCTACCACCG GCGGCACCGGTAACGGCACTGGCAGTGGCGGCGGGTCGGGGAGCGGATCGACCGTCGGCGGCACCGGGAGCGGCGCCGGC GGTGCCTCGAGCGCCGGCACGTCGGCCAATGCACTCGGCCAAACGATCGATTCGTCGAGCAACGTCGTGACGGCCGCGGG CGGCACCGTATCGGGCGCCGGCGCGACGATCGCCAGCCAGTCGCTGCCCGGCACGAACGCCGCGACCACGCAGGGGCTCG GCACCGTCGTGCAGGACGCCGGCGCCGCCGTCACGACACTCGGTACCGGGCTCGGATCGGGGCTCGGCCAGCTCGGCGCA TCGTCGAACCCGGTCGGCACGACGGTCGCGAGCACCGGCGGCGTGGTCACGAATCTCGGCGACGCGGTCGCGGCAACCGG CGGCGTCGTGTCGAGCCTCGGTGGCAGCGGTTCGGCGCTGGCGCCGCTCGCGCCCGTCACATCGCCCGTCGGCGGTGCGA TCACGACGCTCGGCAATACGATCGCGGGCGGCGGCGCGACGCTCGGCACGCAGTTGTCGACCGGCCCGGTCGCGCAGGTC ACGGGCGCCGCCAGTTCGGCGATCACGCCGATCACGACGCAGGTCGGGTCGGTCACGCAGACCGTCGCGTCGAGCACGCC GCTCGGCGCACCGCTGACGAACCTCGTGACGACGGTCGGCAACGGCGTCGCGAACGCCGGCACGACGATCTCGAAAACCG GCGGGAATCCGGTGACGACCGGCATCGGCAACGTCGTGACCGCGACCGGCAACACGGTGGCCACCGCCGGCACGACGCTG CTGGGCGGTGGTGGCGCCGCGACGAGCCCGCTCGCGCCGGTCACGGGGCTCTTGTCGACGGGCGCACTCGGCGGCGCGAC GGGCGGCAGCAATCCGGCAGGTGCGCTCACGTCGGCGGTCGGCACTGTGACGGGAGCCGTGTCGGGCGCGGCCGGCGGCT CGCCCGTCGCGGGGCTGACGGGTGGCAGCGGCACCGGCGCGCTCTCGAAGACGGGCGGTGGCGTGCTCGCCCCCGTGACG ACGACGCTCGGCGCGCTGGTCAAGTAA
Upstream 100 bases:
>100_bases CAACCAACGATGCGCCAGCCGCTTCCTCATCGCAGCGACACATTGACGCACGCGAAGGCCGCCTGACCCCACTCTTCAAT GCAATGAATACGAGGACGAC
Downstream 100 bases:
>100_bases GCGGCAGGCCGGCACGGCGCCCGCATCGTCGCAGACGATCAGGCGCCTTGGCCTTGGCCTTGGCCTTGGCCTTGGCCTTA ACCTTAGCCTCAACTGAAGC
Product: hypothetical protein
Products: NA
Alternate protein names: Hemagglutinin-Related Transmembrane Protein; Triple Helix Repeat-Containing Collagen
Number of amino acids: Translated: 408; Mature: 408
Protein sequence:
>408_residues MDTPTTHQAGLRMIMIAAGVAALVSLSACGGSGSLSQGTGGTGSGSGDTTATTGGTGNGTGSGGGSGSGSTVGGTGSGAG GASSAGTSANALGQTIDSSSNVVTAAGGTVSGAGATIASQSLPGTNAATTQGLGTVVQDAGAAVTTLGTGLGSGLGQLGA SSNPVGTTVASTGGVVTNLGDAVAATGGVVSSLGGSGSALAPLAPVTSPVGGAITTLGNTIAGGGATLGTQLSTGPVAQV TGAASSAITPITTQVGSVTQTVASSTPLGAPLTNLVTTVGNGVANAGTTISKTGGNPVTTGIGNVVTATGNTVATAGTTL LGGGGAATSPLAPVTGLLSTGALGGATGGSNPAGALTSAVGTVTGAVSGAAGGSPVAGLTGGSGTGALSKTGGGVLAPVT TTLGALVK
Sequences:
>Translated_408_residues MDTPTTHQAGLRMIMIAAGVAALVSLSACGGSGSLSQGTGGTGSGSGDTTATTGGTGNGTGSGGGSGSGSTVGGTGSGAG GASSAGTSANALGQTIDSSSNVVTAAGGTVSGAGATIASQSLPGTNAATTQGLGTVVQDAGAAVTTLGTGLGSGLGQLGA SSNPVGTTVASTGGVVTNLGDAVAATGGVVSSLGGSGSALAPLAPVTSPVGGAITTLGNTIAGGGATLGTQLSTGPVAQV TGAASSAITPITTQVGSVTQTVASSTPLGAPLTNLVTTVGNGVANAGTTISKTGGNPVTTGIGNVVTATGNTVATAGTTL LGGGGAATSPLAPVTGLLSTGALGGATGGSNPAGALTSAVGTVTGAVSGAAGGSPVAGLTGGSGTGALSKTGGGVLAPVT TTLGALVK >Mature_408_residues MDTPTTHQAGLRMIMIAAGVAALVSLSACGGSGSLSQGTGGTGSGSGDTTATTGGTGNGTGSGGGSGSGSTVGGTGSGAG GASSAGTSANALGQTIDSSSNVVTAAGGTVSGAGATIASQSLPGTNAATTQGLGTVVQDAGAAVTTLGTGLGSGLGQLGA SSNPVGTTVASTGGVVTNLGDAVAATGGVVSSLGGSGSALAPLAPVTSPVGGAITTLGNTIAGGGATLGTQLSTGPVAQV TGAASSAITPITTQVGSVTQTVASSTPLGAPLTNLVTTVGNGVANAGTTISKTGGNPVTTGIGNVVTATGNTVATAGTTL LGGGGAATSPLAPVTGLLSTGALGGATGGSNPAGALTSAVGTVTGAVSGAAGGSPVAGLTGGSGTGALSKTGGGVLAPVT TTLGALVK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35787; Mature: 35787
Theoretical pI: Translated: 5.58; Mature: 5.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDTPTTHQAGLRMIMIAAGVAALVSLSACGGSGSLSQGTGGTGSGSGDTTATTGGTGNGT CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GSGGGSGSGSTVGGTGSGAGGASSAGTSANALGQTIDSSSNVVTAAGGTVSGAGATIASQ CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCC SLPGTNAATTQGLGTVVQDAGAAVTTLGTGLGSGLGQLGASSNPVGTTVASTGGVVTNLG CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCHHHHCC DAVAATGGVVSSLGGSGSALAPLAPVTSPVGGAITTLGNTIAGGGATLGTQLSTGPVAQV HHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCHHCCCCCCCCCCCCCCCCHHC TGAASSAITPITTQVGSVTQTVASSTPLGAPLTNLVTTVGNGVANAGTTISKTGGNPVTT CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCEEC GIGNVVTATGNTVATAGTTLLGGGGAATSPLAPVTGLLSTGALGGATGGSNPAGALTSAV CCCCEEEECCCEEEECCCEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHH GTVTGAVSGAAGGSPVAGLTGGSGTGALSKTGGGVLAPVTTTLGALVK HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHCC >Mature Secondary Structure MDTPTTHQAGLRMIMIAAGVAALVSLSACGGSGSLSQGTGGTGSGSGDTTATTGGTGNGT CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GSGGGSGSGSTVGGTGSGAGGASSAGTSANALGQTIDSSSNVVTAAGGTVSGAGATIASQ CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCC SLPGTNAATTQGLGTVVQDAGAAVTTLGTGLGSGLGQLGASSNPVGTTVASTGGVVTNLG CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCHHHHCC DAVAATGGVVSSLGGSGSALAPLAPVTSPVGGAITTLGNTIAGGGATLGTQLSTGPVAQV HHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCHHCCCCCCCCCCCCCCCCHHC TGAASSAITPITTQVGSVTQTVASSTPLGAPLTNLVTTVGNGVANAGTTISKTGGNPVTT CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCEEC GIGNVVTATGNTVATAGTTLLGGGGAATSPLAPVTGLLSTGALGGATGGSNPAGALTSAV CCCCEEEECCCEEEECCCEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHH GTVTGAVSGAAGGSPVAGLTGGSGTGALSKTGGGVLAPVTTTLGALVK HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA