| Definition | Burkholderia sp. 383 chromosome 1, complete genome. |
|---|---|
| Accession | NC_007510 |
| Length | 3,694,126 |
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The map label for this gene is ygfF [H]
Identifier: 78067071
GI number: 78067071
Start: 2699320
End: 2700081
Strand: Direct
Name: ygfF [H]
Synonym: Bcep18194_A5602
Alternate gene names: 78067071
Gene position: 2699320-2700081 (Clockwise)
Preceding gene: 78067070
Following gene: 78067072
Centisome position: 73.07
GC content: 73.36
Gene sequence:
>762_bases ATGACCGCACCGTCCGACCGCAAAGCCGTCCTCATCACCGGCGCGAGCCGTGGCATCGGCCGCGCAACCGCCGTGCTCGC GGCCGAGCGCGGCTGGGACGTCGGCATCAACTACGCGCGCGACGCGGCAGCGGCCGAACTCACTGCGCAGGCCGTCCGCG ACGCGGGCGGCCGGGCGTGCGTCGTCGCGGGCGACGTCGCAAACGAAGCCGATGTCGTCGCGATGTTCGACACCGTCACG GCCGCGTTCGGTCGCGTCGACGCGCTGGTCAACAACGCGGGCATCGTCGCGCCGTCGATGCCGCTCGCCGACATGCCGGC CGACCGGCTGCGGCGGATGTTCGACACCAACGTGCTCGGCGCGTACCTGTGTGCGCGCGAAGCCGCGCGCCGGCTGTCCA CCGACCGCGGCGGCCGCGGGGGCGCGATCGTCAACGTATCGTCGATCGCCTCCCGGCTCGGCTCGCCGAACGAATACGTC GACTATGCGGGGTCGAAAGGCGCGGTCGACTCGCTGACGATCGGCCTGGCCAAGGAACTCGGCCCGCACGGCGTGCGCGT CAACGCGGTGCGGCCCGGCCTGATCGAGACCGAAATTCACGCGAGCGGCGGCCAGCCCGGCCGTGCGGCCCGCCTCGGCG CAGCAACGCCGCTCGGCCGCGCGGGCGAAGCGCAGGAGATCGCCGAAGCGATCGTCTGGCTGCTGGGCGATGCGGCGTCC TACACGACGGGCGCCCTGCTCGACGTCGGCGGCGGCCGGTAA
Upstream 100 bases:
>100_bases CCCGTCGAACTGATCGAGCGACTGCGTCGCTACCAGCCGCCCGTTCACGACAAGTGGGCGCCCGACGCAGCCAAGTAACC GTCACCGGAACCCGCACGCG
Downstream 100 bases:
>100_bases TTCCGCACTGCGGCGCATCAAAAACCGCCGCCCGAAACAATCCGTCGTCACGGCACCACAAATCTCCACAATTCCGTGAC ACGAACGGTAAACCTCCGTA
Product: glucose-1-dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 253; Mature: 252
Protein sequence:
>253_residues MTAPSDRKAVLITGASRGIGRATAVLAAERGWDVGINYARDAAAAELTAQAVRDAGGRACVVAGDVANEADVVAMFDTVT AAFGRVDALVNNAGIVAPSMPLADMPADRLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPNEYV DYAGSKGAVDSLTIGLAKELGPHGVRVNAVRPGLIETEIHASGGQPGRAARLGAATPLGRAGEAQEIAEAIVWLLGDAAS YTTGALLDVGGGR
Sequences:
>Translated_253_residues MTAPSDRKAVLITGASRGIGRATAVLAAERGWDVGINYARDAAAAELTAQAVRDAGGRACVVAGDVANEADVVAMFDTVT AAFGRVDALVNNAGIVAPSMPLADMPADRLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPNEYV DYAGSKGAVDSLTIGLAKELGPHGVRVNAVRPGLIETEIHASGGQPGRAARLGAATPLGRAGEAQEIAEAIVWLLGDAAS YTTGALLDVGGGR >Mature_252_residues TAPSDRKAVLITGASRGIGRATAVLAAERGWDVGINYARDAAAAELTAQAVRDAGGRACVVAGDVANEADVVAMFDTVTA AFGRVDALVNNAGIVAPSMPLADMPADRLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPNEYVD YAGSKGAVDSLTIGLAKELGPHGVRVNAVRPGLIETEIHASGGQPGRAARLGAATPLGRAGEAQEIAEAIVWLLGDAASY TTGALLDVGGGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI40254992, Length=245, Percent_Identity=36.3265306122449, Blast_Score=121, Evalue=5e-28, Organism=Homo sapiens, GI7705925, Length=249, Percent_Identity=37.3493975903614, Blast_Score=109, Evalue=3e-24, Organism=Homo sapiens, GI59889578, Length=199, Percent_Identity=35.1758793969849, Blast_Score=98, Evalue=6e-21, Organism=Homo sapiens, GI15277342, Length=249, Percent_Identity=31.3253012048193, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI109715829, Length=246, Percent_Identity=30.4878048780488, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI10190704, Length=251, Percent_Identity=32.2709163346614, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI19923817, Length=252, Percent_Identity=29.3650793650794, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI32483357, Length=254, Percent_Identity=31.1023622047244, Blast_Score=78, Evalue=7e-15, Organism=Homo sapiens, GI209862901, Length=206, Percent_Identity=32.0388349514563, Blast_Score=78, Evalue=8e-15, Organism=Homo sapiens, GI19923983, Length=206, Percent_Identity=32.0388349514563, Blast_Score=78, Evalue=8e-15, Organism=Homo sapiens, GI4758504, Length=240, Percent_Identity=30, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI31542939, Length=202, Percent_Identity=30.6930693069307, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI210032110, Length=207, Percent_Identity=29.4685990338164, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI40254986, Length=202, Percent_Identity=29.7029702970297, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI4504505, Length=260, Percent_Identity=28.0769230769231, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI83715985, Length=216, Percent_Identity=29.1666666666667, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI2367175, Length=243, Percent_Identity=52.6748971193416, Blast_Score=270, Evalue=7e-74, Organism=Escherichia coli, GI1788459, Length=248, Percent_Identity=36.6935483870968, Blast_Score=144, Evalue=8e-36, Organism=Escherichia coli, GI1789378, Length=253, Percent_Identity=33.596837944664, Blast_Score=126, Evalue=2e-30, Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=35.8870967741936, Blast_Score=121, Evalue=6e-29, Organism=Escherichia coli, GI1790717, Length=246, Percent_Identity=31.7073170731707, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=34.0080971659919, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI2367365, Length=244, Percent_Identity=34.0163934426229, Blast_Score=97, Evalue=8e-22, Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=30, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=29.1497975708502, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1786812, Length=261, Percent_Identity=32.5670498084291, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI87082100, Length=256, Percent_Identity=30.859375, Blast_Score=80, Evalue=9e-17, Organism=Escherichia coli, GI1789057, Length=201, Percent_Identity=30.3482587064677, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1787891, Length=249, Percent_Identity=28.9156626506024, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1787526, Length=249, Percent_Identity=24.8995983935743, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI71994604, Length=250, Percent_Identity=37.6, Blast_Score=132, Evalue=2e-31, Organism=Caenorhabditis elegans, GI71994600, Length=254, Percent_Identity=35.8267716535433, Blast_Score=126, Evalue=1e-29, Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=34.0996168582375, Blast_Score=113, Evalue=8e-26, Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=34.5528455284553, Blast_Score=113, Evalue=9e-26, Organism=Caenorhabditis elegans, GI17560150, Length=258, Percent_Identity=33.7209302325581, Blast_Score=107, Evalue=6e-24, Organism=Caenorhabditis elegans, GI17562904, Length=242, Percent_Identity=31.404958677686, Blast_Score=104, Evalue=4e-23, Organism=Caenorhabditis elegans, GI25147288, Length=244, Percent_Identity=34.4262295081967, Blast_Score=103, Evalue=8e-23, Organism=Caenorhabditis elegans, GI17544670, Length=247, Percent_Identity=32.3886639676113, Blast_Score=99, Evalue=1e-21, Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=32.6923076923077, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17531453, Length=261, Percent_Identity=32.183908045977, Blast_Score=97, Evalue=8e-21, Organism=Caenorhabditis elegans, GI193204405, Length=261, Percent_Identity=32.9501915708812, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17562910, Length=259, Percent_Identity=32.8185328185328, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17565030, Length=258, Percent_Identity=32.1705426356589, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17562990, Length=243, Percent_Identity=33.3333333333333, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17563726, Length=239, Percent_Identity=34.7280334728033, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=31.2977099236641, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17538480, Length=268, Percent_Identity=31.3432835820896, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17560332, Length=265, Percent_Identity=32.4528301886792, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17551412, Length=262, Percent_Identity=30.1526717557252, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17555706, Length=245, Percent_Identity=31.0204081632653, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=31.3207547169811, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17536651, Length=255, Percent_Identity=30.1960784313725, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17538182, Length=201, Percent_Identity=30.8457711442786, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17560676, Length=254, Percent_Identity=29.9212598425197, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17536025, Length=257, Percent_Identity=29.9610894941634, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17561272, Length=246, Percent_Identity=30.0813008130081, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17562908, Length=205, Percent_Identity=34.1463414634146, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17560220, Length=262, Percent_Identity=31.2977099236641, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI71982365, Length=197, Percent_Identity=29.4416243654822, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=26.4, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17564282, Length=254, Percent_Identity=30.7086614173228, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17508895, Length=235, Percent_Identity=30.2127659574468, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17558628, Length=194, Percent_Identity=29.8969072164948, Blast_Score=67, Evalue=6e-12, Organism=Saccharomyces cerevisiae, GI6324126, Length=253, Percent_Identity=29.2490118577075, Blast_Score=83, Evalue=5e-17, Organism=Saccharomyces cerevisiae, GI6322861, Length=193, Percent_Identity=31.0880829015544, Blast_Score=79, Evalue=5e-16, Organism=Saccharomyces cerevisiae, GI6323882, Length=234, Percent_Identity=32.0512820512821, Blast_Score=79, Evalue=5e-16, Organism=Saccharomyces cerevisiae, GI6322226, Length=201, Percent_Identity=24.8756218905473, Blast_Score=62, Evalue=9e-11, Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=36.9047619047619, Blast_Score=132, Evalue=2e-31, Organism=Drosophila melanogaster, GI21357041, Length=257, Percent_Identity=39.2996108949416, Blast_Score=130, Evalue=1e-30, Organism=Drosophila melanogaster, GI28571526, Length=259, Percent_Identity=37.4517374517375, Blast_Score=125, Evalue=2e-29, Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=35.4581673306773, Blast_Score=125, Evalue=2e-29, Organism=Drosophila melanogaster, GI24639444, Length=245, Percent_Identity=31.8367346938775, Blast_Score=99, Evalue=2e-21, Organism=Drosophila melanogaster, GI24644337, Length=198, Percent_Identity=36.3636363636364, Blast_Score=97, Evalue=7e-21, Organism=Drosophila melanogaster, GI21355319, Length=256, Percent_Identity=32.03125, Blast_Score=93, Evalue=1e-19, Organism=Drosophila melanogaster, GI24643142, Length=168, Percent_Identity=36.9047619047619, Blast_Score=92, Evalue=2e-19, Organism=Drosophila melanogaster, GI17737361, Length=230, Percent_Identity=30, Blast_Score=78, Evalue=4e-15, Organism=Drosophila melanogaster, GI116007236, Length=238, Percent_Identity=28.5714285714286, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24641232, Length=199, Percent_Identity=30.6532663316583, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24640492, Length=200, Percent_Identity=29.5, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI24641388, Length=199, Percent_Identity=34.1708542713568, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI24584752, Length=196, Percent_Identity=30.6122448979592, Blast_Score=70, Evalue=9e-13, Organism=Drosophila melanogaster, GI24648693, Length=252, Percent_Identity=27.7777777777778, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI21355889, Length=252, Percent_Identity=27.7777777777778, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI281364494, Length=201, Percent_Identity=29.8507462686567, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI21357673, Length=205, Percent_Identity=29.7560975609756, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24648944, Length=238, Percent_Identity=26.4705882352941, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI18859837, Length=200, Percent_Identity=31.5, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI28571387, Length=200, Percent_Identity=30.5, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24663911, Length=238, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 25707; Mature: 25576
Theoretical pI: Translated: 6.54; Mature: 6.54
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAPSDRKAVLITGASRGIGRATAVLAAERGWDVGINYARDAAAAELTAQAVRDAGGRAC CCCCCCCCEEEEECCCCCCCHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE VVAGDVANEADVVAMFDTVTAAFGRVDALVNNAGIVAPSMPLADMPADRLRRMFDTNVLG EEECCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHCCHHHH AYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPNEYVDYAGSKGAVDSLTIGLAKEL HHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHC GPHGVRVNAVRPGLIETEIHASGGQPGRAARLGAATPLGRAGEAQEIAEAIVWLLGDAAS CCCCEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHCCCCC YTTGALLDVGGGR CCCCEEEECCCCC >Mature Secondary Structure TAPSDRKAVLITGASRGIGRATAVLAAERGWDVGINYARDAAAAELTAQAVRDAGGRAC CCCCCCCEEEEECCCCCCCHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE VVAGDVANEADVVAMFDTVTAAFGRVDALVNNAGIVAPSMPLADMPADRLRRMFDTNVLG EEECCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHCCHHHH AYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPNEYVDYAGSKGAVDSLTIGLAKEL HHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHC GPHGVRVNAVRPGLIETEIHASGGQPGRAARLGAATPLGRAGEAQEIAEAIVWLLGDAAS CCCCEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHCCCCC YTTGALLDVGGGR CCCCEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503; 7764507 [H]