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The map label for this gene is intS [C]

Identifier: 78066713

GI number: 78066713

Start: 2297566

End: 2297922

Strand: Reverse

Name: intS [C]

Synonym: Bcep18194_A5244

Alternate gene names: 78066713

Gene position: 2297922-2297566 (Counterclockwise)

Preceding gene: 78066715

Following gene: 78066712

Centisome position: 62.2

GC content: 54.06

Gene sequence:

>357_bases
ATGCCCCTTACCGATGTCGCCGTTCGTGCGGCCAAGCCTCGCGAAAAATCCTACAAGCTGGCCGACGGCCAAGGCATGTA
CCTTGAGGTCATGCCGAACGGGTCGAAGTACTGGCGATTGAAGTATCGCATCGACGGCAAAGAGAAGCGGATGACTTCGA
GGACTTGGCTCGGGTGCTCGCGGCACTACGACAGATGGGCGCTCAACAGGTCTATCCGATTTCGCGTTTCGACGAAACGG
CGAAAGAACGGCTTTTTGCGTATCGGATCGACCAAATTAATCGTTTGCGCTTGGGGAAACCTCACAGTTGGATCATTTCT
GAACTTATGCGGTTCGAGGGCTTTCGGACAACATTAG

Upstream 100 bases:

>100_bases
CAGCGTTGCCCAGTGTTTCTCATTGACACCCACGAAATCAGGGGGCATCGTAGGGGGGCAGTTTTCCTGATCAAGGGCAT
CGAAATGCCGCCATGCTCAA

Downstream 100 bases:

>100_bases
ATGACAGGAACATAGAGAAGTACGTTGCTCAATGGGGACGCCCATTCGATCCATTTTCATTGTCGAGCGCAACGGCGGTA
GACGAACCAAAACCATAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: Integrase; Phage Integrase; Site-Specific Recombinase Phage Integrase Family; Phage Integrase Family Site Specific Recombinase; Phage Integrase Family Protein; Prophage Integrase; Site-Specific Recombinase Phage Integrase Family Protein; Site-Specific Recombinase; Prophage CP4-Like Integrase; CP4-Like Integrase; Bacteriophage P4-Type Integrase; DNA Integration/Recombination/Inversion Protein; Cp4-Like Integrase Protein; CP4 Integrase Protein

Number of amino acids: Translated: 118; Mature: 117

Protein sequence:

>118_residues
MPLTDVAVRAAKPREKSYKLADGQGMYLEVMPNGSKYWRLKYRIDGKEKRMTSRTWLGCSRHYDRWALNRSIRFRVSTKR
RKNGFLRIGSTKLIVCAWGNLTVGSFLNLCGSRAFGQH

Sequences:

>Translated_118_residues
MPLTDVAVRAAKPREKSYKLADGQGMYLEVMPNGSKYWRLKYRIDGKEKRMTSRTWLGCSRHYDRWALNRSIRFRVSTKR
RKNGFLRIGSTKLIVCAWGNLTVGSFLNLCGSRAFGQH
>Mature_117_residues
PLTDVAVRAAKPREKSYKLADGQGMYLEVMPNGSKYWRLKYRIDGKEKRMTSRTWLGCSRHYDRWALNRSIRFRVSTKRR
KNGFLRIGSTKLIVCAWGNLTVGSFLNLCGSRAFGQH

Specific function: Integrase Is Necessary For Integration Of The Phage Into The Host Genome By Site-Specific Recombination. In Conjunction With Excisionase, Integrase Is Also Necessary For Excision Of The Prophage From The Host Genome. [C]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788690, Length=50, Percent_Identity=56, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13674; Mature: 13543

Theoretical pI: Translated: 11.42; Mature: 11.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLTDVAVRAAKPREKSYKLADGQGMYLEVMPNGSKYWRLKYRIDGKEKRMTSRTWLGCS
CCCCHHEEECCCCCCCCEEEECCCCEEEEEEECCCEEEEEEEEECCCHHCCCCCCCCCCC
RHYDRWALNRSIRFRVSTKRRKNGFLRIGSTKLIVCAWGNLTVGSFLNLCGSRAFGQH
CCCCCEEECCEEEEEEECCCCCCCEEEECCCEEEEEEECCCCHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
PLTDVAVRAAKPREKSYKLADGQGMYLEVMPNGSKYWRLKYRIDGKEKRMTSRTWLGCS
CCCHHEEECCCCCCCCEEEECCCCEEEEEEECCCEEEEEEEEECCCHHCCCCCCCCCCC
RHYDRWALNRSIRFRVSTKRRKNGFLRIGSTKLIVCAWGNLTVGSFLNLCGSRAFGQH
CCCCCEEECCEEEEEEECCCCCCCEEEECCCEEEEEEECCCCHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA