Click here to switch to the map view.

The map label for this gene is pcaC [H]

Identifier: 78066613

GI number: 78066613

Start: 2190822

End: 2191256

Strand: Reverse

Name: pcaC [H]

Synonym: Bcep18194_A5144

Alternate gene names: 78066613

Gene position: 2191256-2190822 (Counterclockwise)

Preceding gene: 78066614

Following gene: 78066611

Centisome position: 59.32

GC content: 65.06

Gene sequence:

>435_bases
ATGGAACGACTCGTTGAAGACCGCTACACGCGCGGCTGGAACAAACTGAAGGAAATCGACGGCGAAGTGGGCGAGCGCGT
GATCGCGGCGCTGGCGCCGATTGCACCGGACTTTGGGCGGCTCCTGGTCGAGTTCAGCTTCGGCGACATCTACAGCCGGC
CGCAGCTCGACCTGAAAGCGCGAGAAATCGCGACGATCGCGGCGCTGGCCGCACTCGGCAACGCGCAGCCGCAGTTGAAG
GTGCATATCGAGGCCGCGCTGAACGTCGGCTGCACGCGCGACGAGATCGTCGAGGTGTTCATGCAGATGGCCGTGTACGC
GGGTATGCCGGCCGCACTCAACGCGTTGTTCGCCGCGCACGAAGTGTTTACGCGGCGTGATGAAGCGGCCGGCAATGCGG
CAGACGTGAACGAAGCGGCCGGGCAGCCCGCATGA

Upstream 100 bases:

>100_bases
GACGTGATCAGCGACAAGATCGTGAACTACGAGGCGCAGGAGCGGGAGATGGCACGACGGGCAAGACCTTCTCACTCCCT
ATCGGAACAGGATGGACACA

Downstream 100 bases:

>100_bases
CGAAGCGCGCGCCAGCGCGTCACGCGCGATGTGGCGCGACGATCCGGTGCTTCGCGATGCGTCGGTACAGCGTCGCGCGC
GAGATGCCGAGCGCCTGCGC

Product: carboxymuconolactone decarboxylase

Products: NA

Alternate protein names: CMD [H]

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MERLVEDRYTRGWNKLKEIDGEVGERVIAALAPIAPDFGRLLVEFSFGDIYSRPQLDLKAREIATIAALAALGNAQPQLK
VHIEAALNVGCTRDEIVEVFMQMAVYAGMPAALNALFAAHEVFTRRDEAAGNAADVNEAAGQPA

Sequences:

>Translated_144_residues
MERLVEDRYTRGWNKLKEIDGEVGERVIAALAPIAPDFGRLLVEFSFGDIYSRPQLDLKAREIATIAALAALGNAQPQLK
VHIEAALNVGCTRDEIVEVFMQMAVYAGMPAALNALFAAHEVFTRRDEAAGNAADVNEAAGQPA
>Mature_144_residues
MERLVEDRYTRGWNKLKEIDGEVGERVIAALAPIAPDFGRLLVEFSFGDIYSRPQLDLKAREIATIAALAALGNAQPQLK
VHIEAALNVGCTRDEIVEVFMQMAVYAGMPAALNALFAAHEVFTRRDEAAGNAADVNEAAGQPA

Specific function: Unknown

COG id: COG0599

COG function: function code S; Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003779
- InterPro:   IPR012788 [H]

Pfam domain/function: PF02627 CMD [H]

EC number: =4.1.1.44 [H]

Molecular weight: Translated: 15596; Mature: 15596

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERLVEDRYTRGWNKLKEIDGEVGERVIAALAPIAPDFGRLLVEFSFGDIYSRPQLDLKA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCHHH
REIATIAALAALGNAQPQLKVHIEAALNVGCTRDEIVEVFMQMAVYAGMPAALNALFAAH
HHHHHHHHHHHHCCCCCCEEEEEEEHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
EVFTRRDEAAGNAADVNEAAGQPA
HHHHHHHHCCCCCCCCHHCCCCCC
>Mature Secondary Structure
MERLVEDRYTRGWNKLKEIDGEVGERVIAALAPIAPDFGRLLVEFSFGDIYSRPQLDLKA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCHHH
REIATIAALAALGNAQPQLKVHIEAALNVGCTRDEIVEVFMQMAVYAGMPAALNALFAAH
HHHHHHHHHHHHCCCCCCEEEEEEEHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
EVFTRRDEAAGNAADVNEAAGQPA
HHHHHHHHCCCCCCCCHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2298704 [H]