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The map label for this gene is yfdE [H]

Identifier: 78066594

GI number: 78066594

Start: 2168326

End: 2169531

Strand: Reverse

Name: yfdE [H]

Synonym: Bcep18194_A5125

Alternate gene names: 78066594

Gene position: 2169531-2168326 (Counterclockwise)

Preceding gene: 78066595

Following gene: 78066593

Centisome position: 58.73

GC content: 67.5

Gene sequence:

>1206_bases
ATGAGCACCAGCCAGGGCCCGCTTGCGGGCGTCAAAGTGCTCGAATTCGGAACGCTGATCGCGGGACCGTTCGCGTCGCG
GCTGTTCGCCGAATTCGGCGCGGAAGTGATCAAGATCGAGGATCCGAACGGCGGCGACCCGCTGCGCAAGTGGCGCAAGC
TCCATCCGGAGCAGGGCGGCACGTCGCTGTGGTGGTCCGTCCAGGCGCGCAACAAGAAATCGGTCACGCTCAACCTGAAG
GCCGACGCCGGCAAGGCGATCGCGCGGCAACTCGCGCGCGAGGCCGACATCGTGATCGAGAACTTCCGCCCGGGCCTGCT
CGAAAAGCTCGGGCTCGGCTACGACGTGCTGTCGGCCGACAACCCGGGCCTCGTGATGGTGCGCTTGTCGGGTTACGGGC
AGACGGGCCCGTACCGCGATCGGCCCGGCTTCGGCGCGATCGCCGAATCGATGGGCGGGCTGCGTCACATCACCGGCTAT
CCCGAGCTGCCGCCGCCGCGCATCGGCATCTCGATCGGCGATTCGATCGCCGCGCTGCACGGCGTGATCGGCGCGCTGAT
GGCGCTGCATCACCGCAAGGTCAACGGCGGCGCGGGGCAGGTGGTCGACGTTGCACTGTATGAAGCCGTCTTCAACATGA
TGGAAAGCGTGGTGCCCGAATACGGCGTGTACGGGATGGTGCGCGAGCGTACCGGCGCGTCGCTGCCGGGCATCGTGCCG
TCGAATACGTACGCGTGCCGTGACGGCAGCATCGTGATCGGCGGCAACAGCGATCCGATCTTCAAGCGCCTGATGAAAGC
GATCGAGCGCGACGACCTCGCCGACGATCCCGCGCTTGCGCAAAACGACGGGCGCGTGCCGCGCACGCAGGAGATCGACG
ATGCGATCGCTGCGTGGCTCGCGCCGCGCACGATCGAAGAAGCGCTTGTCGTGCTCAATGCAGCCGACGTGCCGGCCGGG
CGCATCTATAGCGCGGCCGACATGTTCACCGATCCGCAGTTCGTCGCACGGCGGATGATCCAGCGCTTCAAGCTGGCCGA
CGGCACCGACATTCCGCTGCCGAACATCACGCCGAAGCTGTCCGACACGCCGGGCGAAACGCGCTGGCTCGGGCCCGAAC
TCGGCGAGCATACGGACGAGGTGCTGCGTGGCCTCGGCTACGACGCGCCGGCGATTGCCGCACTGCGCGACGCGGGCGCG
ATTTGA

Upstream 100 bases:

>100_bases
CGTCGACGCGGGCACCATCGCCCGCGCGATGCTCGACCGCCGCACTATGTAAGCCGGGCGCCGCTGCCAGGCGGCGCCGT
TCCTCATACCAGGGAGACAC

Downstream 100 bases:

>100_bases
GCACCCTCGGGCCTGGCGTTTCGCGCCAGGCTCCCGGAACGGAGCGTTCGCCAACGGGGCTCCGTTAGCGGGGGAAAACC
CGGGCCGGCGCGGCGCTTTC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MSTSQGPLAGVKVLEFGTLIAGPFASRLFAEFGAEVIKIEDPNGGDPLRKWRKLHPEQGGTSLWWSVQARNKKSVTLNLK
ADAGKAIARQLAREADIVIENFRPGLLEKLGLGYDVLSADNPGLVMVRLSGYGQTGPYRDRPGFGAIAESMGGLRHITGY
PELPPPRIGISIGDSIAALHGVIGALMALHHRKVNGGAGQVVDVALYEAVFNMMESVVPEYGVYGMVRERTGASLPGIVP
SNTYACRDGSIVIGGNSDPIFKRLMKAIERDDLADDPALAQNDGRVPRTQEIDDAIAAWLAPRTIEEALVVLNAADVPAG
RIYSAADMFTDPQFVARRMIQRFKLADGTDIPLPNITPKLSDTPGETRWLGPELGEHTDEVLRGLGYDAPAIAALRDAGA
I

Sequences:

>Translated_401_residues
MSTSQGPLAGVKVLEFGTLIAGPFASRLFAEFGAEVIKIEDPNGGDPLRKWRKLHPEQGGTSLWWSVQARNKKSVTLNLK
ADAGKAIARQLAREADIVIENFRPGLLEKLGLGYDVLSADNPGLVMVRLSGYGQTGPYRDRPGFGAIAESMGGLRHITGY
PELPPPRIGISIGDSIAALHGVIGALMALHHRKVNGGAGQVVDVALYEAVFNMMESVVPEYGVYGMVRERTGASLPGIVP
SNTYACRDGSIVIGGNSDPIFKRLMKAIERDDLADDPALAQNDGRVPRTQEIDDAIAAWLAPRTIEEALVVLNAADVPAG
RIYSAADMFTDPQFVARRMIQRFKLADGTDIPLPNITPKLSDTPGETRWLGPELGEHTDEVLRGLGYDAPAIAALRDAGA
I
>Mature_400_residues
STSQGPLAGVKVLEFGTLIAGPFASRLFAEFGAEVIKIEDPNGGDPLRKWRKLHPEQGGTSLWWSVQARNKKSVTLNLKA
DAGKAIARQLAREADIVIENFRPGLLEKLGLGYDVLSADNPGLVMVRLSGYGQTGPYRDRPGFGAIAESMGGLRHITGYP
ELPPPRIGISIGDSIAALHGVIGALMALHHRKVNGGAGQVVDVALYEAVFNMMESVVPEYGVYGMVRERTGASLPGIVPS
NTYACRDGSIVIGGNSDPIFKRLMKAIERDDLADDPALAQNDGRVPRTQEIDDAIAAWLAPRTIEEALVVLNAADVPAGR
IYSAADMFTDPQFVARRMIQRFKLADGTDIPLPNITPKLSDTPGETRWLGPELGEHTDEVLRGLGYDAPAIAALRDAGAI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=396, Percent_Identity=31.0606060606061, Blast_Score=199, Evalue=3e-51,
Organism=Homo sapiens, GI300863124, Length=423, Percent_Identity=30.2600472813239, Blast_Score=186, Evalue=2e-47,
Organism=Homo sapiens, GI300863126, Length=396, Percent_Identity=29.5454545454545, Blast_Score=168, Evalue=7e-42,
Organism=Homo sapiens, GI13376042, Length=423, Percent_Identity=27.1867612293144, Blast_Score=140, Evalue=1e-33,
Organism=Homo sapiens, GI266456254, Length=394, Percent_Identity=26.3959390862944, Blast_Score=112, Evalue=8e-25,
Organism=Homo sapiens, GI42794625, Length=394, Percent_Identity=26.3959390862944, Blast_Score=112, Evalue=9e-25,
Organism=Homo sapiens, GI266458397, Length=260, Percent_Identity=29.6153846153846, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI266458393, Length=260, Percent_Identity=29.6153846153846, Blast_Score=99, Evalue=7e-21,
Organism=Homo sapiens, GI266458395, Length=131, Percent_Identity=35.8778625954198, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI42822893, Length=131, Percent_Identity=35.8778625954198, Blast_Score=89, Evalue=5e-18,
Organism=Escherichia coli, GI87082093, Length=337, Percent_Identity=33.5311572700297, Blast_Score=201, Evalue=5e-53,
Organism=Escherichia coli, GI1788717, Length=436, Percent_Identity=29.3577981651376, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1786222, Length=403, Percent_Identity=29.7766749379653, Blast_Score=154, Evalue=1e-38,
Organism=Caenorhabditis elegans, GI115535051, Length=276, Percent_Identity=30.0724637681159, Blast_Score=104, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI32564160, Length=299, Percent_Identity=27.0903010033445, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24648431, Length=396, Percent_Identity=31.3131313131313, Blast_Score=212, Evalue=3e-55,
Organism=Drosophila melanogaster, GI24585488, Length=370, Percent_Identity=27.5675675675676, Blast_Score=108, Evalue=6e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42978; Mature: 42846

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSQGPLAGVKVLEFGTLIAGPFASRLFAEFGAEVIKIEDPNGGDPLRKWRKLHPEQGG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCC
TSLWWSVQARNKKSVTLNLKADAGKAIARQLAREADIVIENFRPGLLEKLGLGYDVLSAD
CEEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEECCC
NPGLVMVRLSGYGQTGPYRDRPGFGAIAESMGGLRHITGYPELPPPRIGISIGDSIAALH
CCCEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCEEEECCHHHHHHH
GVIGALMALHHRKVNGGAGQVVDVALYEAVFNMMESVVPEYGVYGMVRERTGASLPGIVP
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCC
SNTYACRDGSIVIGGNSDPIFKRLMKAIERDDLADDPALAQNDGRVPRTQEIDDAIAAWL
CCCEEECCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
APRTIEEALVVLNAADVPAGRIYSAADMFTDPQFVARRMIQRFKLADGTDIPLPNITPKL
CHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
SDTPGETRWLGPELGEHTDEVLRGLGYDAPAIAALRDAGAI
CCCCCCCEECCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
>Mature Secondary Structure 
STSQGPLAGVKVLEFGTLIAGPFASRLFAEFGAEVIKIEDPNGGDPLRKWRKLHPEQGG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCC
TSLWWSVQARNKKSVTLNLKADAGKAIARQLAREADIVIENFRPGLLEKLGLGYDVLSAD
CEEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEECCC
NPGLVMVRLSGYGQTGPYRDRPGFGAIAESMGGLRHITGYPELPPPRIGISIGDSIAALH
CCCEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCEEEECCHHHHHHH
GVIGALMALHHRKVNGGAGQVVDVALYEAVFNMMESVVPEYGVYGMVRERTGASLPGIVP
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCC
SNTYACRDGSIVIGGNSDPIFKRLMKAIERDDLADDPALAQNDGRVPRTQEIDDAIAAWL
CCCEEECCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
APRTIEEALVVLNAADVPAGRIYSAADMFTDPQFVARRMIQRFKLADGTDIPLPNITPKL
CHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
SDTPGETRWLGPELGEHTDEVLRGLGYDAPAIAALRDAGAI
CCCCCCCEECCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]