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The map label for this gene is potC [C]

Identifier: 78065812

GI number: 78065812

Start: 1293185

End: 1294081

Strand: Reverse

Name: potC [C]

Synonym: Bcep18194_A4341

Alternate gene names: 78065812

Gene position: 1294081-1293185 (Counterclockwise)

Preceding gene: 78065813

Following gene: 78065811

Centisome position: 35.03

GC content: 70.35

Gene sequence:

>897_bases
ATGCAATCGCTTTCCGGCTCTTCCGCGCCGTCGCCGGCCCCCGCTCCCGCGCAGGCGAACGGCGTCGCCCGCCGCGCGCC
GCGCGTCACCGGCGCGCGCGCGATCGCCGCGCTGCAATGGGGCGTCACGCTGCTGCTGTGTGCGTTCCTGATCGTGCCCG
TCGTGATGTCGGTGCTCGCGGGCCTCACCGTCAACTACTTCCGCGGCCTGTCGAGCGGCCTCACGCTGCGCTGGCTCGAA
CAGGTGTGGCAGCAGTATCACGGCTCGGTCGCGCTGTCGCTGTACGTCGCGTTCGCGACGCTCGCGATCGTGCTCGTCGT
CGGCGTGCCGGCCGGCTATGCGCTTGCGCGCAGCAAGAGCCGTGTCGCGCGTGCGATCGAAGAGGCACTGGTGCTGCCGG
TCGCACTGCCCGGCCTCGCGTCGGCACTCGCGCTGCTGGTCGTCTACGGCGGCTTCACCGCGTTCCGGATGAGCCTGTGG
TTCATCGTCGTCGGCCACGTCGTGTTCACGCTGCCGTTCATGGTGCGCGCGGTCGCGGCCGTCGCGGCCGGTGCCGACCT
GCGCACGCTCGAGGAAGGCGCGGCCAGCCTCGGCGCATCGTTCGTCACGCGCTTCGTCACGATCGTGCTGCCGAACCTTC
GCCCCGGCATCGTCGCGGGTGCGCTCGCGGTGCTCACGCTGTCGATCGGCGAATTCAACCTCACGTGGATGCTGCATACG
CCCGACACCAAGACGCTGCCCGTCGGGCTGGCCGATACGTATGCGTCGCTGCGCCTCGAAGTCGGCAGCGCGTACACGAT
CCTGTTCCTGCTGATGACGCTGCCGCTGCTCGTCGCGATGCAGTGGCTCGGCGTCGATCCGTCCGGCACGCGCGCGCTCA
AGAAGCGCCCGCGCTGA

Upstream 100 bases:

>100_bases
GGCCTGTCGATCGTGCTCGGCATCGTCACCTGGGCCGTGCTCGCGCTCGCGCGCCGCTTCACCGGCCACACCGCCGCCGC
CGCGGCCTGAGGATTCCTGC

Downstream 100 bases:

>100_bases
ATATCTCGCAGACATGAAACTCGATTCCACCCCCATCACCCTGACCCGCGGTGCAAAGACGTTCCGCGGCACCCGCGTGC
TCGAACCGCTCGACCTGTCG

Product: ABC spermidine/putrescine transporter, inner membrane subunit

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: ABC Spermidine/Putrescine Transporter Permease Protein; ABC-Type Transporter Permease Component; ABC TRANSPORTER Membrane Component; Spermidine/Putrescine ABC Transporter Permease; ABC Transporter Inner Membrane Protein; ABC Transport System Permease Component; Molybdenum ABC Transporter Permease; ABC Transporter Membrane Component; ABC Transporter Membrane Protein; ABC Transporter Permease; Permease Protein; ABC Polyamine Transporter Inner Membrane Subunit

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MQSLSGSSAPSPAPAPAQANGVARRAPRVTGARAIAALQWGVTLLLCAFLIVPVVMSVLAGLTVNYFRGLSSGLTLRWLE
QVWQQYHGSVALSLYVAFATLAIVLVVGVPAGYALARSKSRVARAIEEALVLPVALPGLASALALLVVYGGFTAFRMSLW
FIVVGHVVFTLPFMVRAVAAVAAGADLRTLEEGAASLGASFVTRFVTIVLPNLRPGIVAGALAVLTLSIGEFNLTWMLHT
PDTKTLPVGLADTYASLRLEVGSAYTILFLLMTLPLLVAMQWLGVDPSGTRALKKRPR

Sequences:

>Translated_298_residues
MQSLSGSSAPSPAPAPAQANGVARRAPRVTGARAIAALQWGVTLLLCAFLIVPVVMSVLAGLTVNYFRGLSSGLTLRWLE
QVWQQYHGSVALSLYVAFATLAIVLVVGVPAGYALARSKSRVARAIEEALVLPVALPGLASALALLVVYGGFTAFRMSLW
FIVVGHVVFTLPFMVRAVAAVAAGADLRTLEEGAASLGASFVTRFVTIVLPNLRPGIVAGALAVLTLSIGEFNLTWMLHT
PDTKTLPVGLADTYASLRLEVGSAYTILFLLMTLPLLVAMQWLGVDPSGTRALKKRPR
>Mature_298_residues
MQSLSGSSAPSPAPAPAQANGVARRAPRVTGARAIAALQWGVTLLLCAFLIVPVVMSVLAGLTVNYFRGLSSGLTLRWLE
QVWQQYHGSVALSLYVAFATLAIVLVVGVPAGYALARSKSRVARAIEEALVLPVALPGLASALALLVVYGGFTAFRMSLW
FIVVGHVVFTLPFMVRAVAAVAAGADLRTLEEGAASLGASFVTRFVTIVLPNLRPGIVAGALAVLTLSIGEFNLTWMLHT
PDTKTLPVGLADTYASLRLEVGSAYTILFLLMTLPLLVAMQWLGVDPSGTRALKKRPR

Specific function: Required For The Activity Of The Bacterial Periplasmic Transport System Of Putrescine And Spermidine. [C]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787368, Length=228, Percent_Identity=27.6315789473684, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31419; Mature: 31419

Theoretical pI: Translated: 10.96; Mature: 10.96

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSLSGSSAPSPAPAPAQANGVARRAPRVTGARAIAALQWGVTLLLCAFLIVPVVMSVLA
CCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLTVNYFRGLSSGLTLRWLEQVWQQYHGSVALSLYVAFATLAIVLVVGVPAGYALARSKS
HHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
RVARAIEEALVLPVALPGLASALALLVVYGGFTAFRMSLWFIVVGHVVFTLPFMVRAVAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAAGADLRTLEEGAASLGASFVTRFVTIVLPNLRPGIVAGALAVLTLSIGEFNLTWMLHT
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEC
PDTKTLPVGLADTYASLRLEVGSAYTILFLLMTLPLLVAMQWLGVDPSGTRALKKRPR
CCCCEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCC
>Mature Secondary Structure
MQSLSGSSAPSPAPAPAQANGVARRAPRVTGARAIAALQWGVTLLLCAFLIVPVVMSVLA
CCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLTVNYFRGLSSGLTLRWLEQVWQQYHGSVALSLYVAFATLAIVLVVGVPAGYALARSKS
HHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
RVARAIEEALVLPVALPGLASALALLVVYGGFTAFRMSLWFIVVGHVVFTLPFMVRAVAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAAGADLRTLEEGAASLGASFVTRFVTIVLPNLRPGIVAGALAVLTLSIGEFNLTWMLHT
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEC
PDTKTLPVGLADTYASLRLEVGSAYTILFLLMTLPLLVAMQWLGVDPSGTRALKKRPR
CCCCEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA