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The map label for this gene is yjcC [C]

Identifier: 78065797

GI number: 78065797

Start: 1279391

End: 1280671

Strand: Reverse

Name: yjcC [C]

Synonym: Bcep18194_A4326

Alternate gene names: 78065797

Gene position: 1280671-1279391 (Counterclockwise)

Preceding gene: 78065798

Following gene: 78065792

Centisome position: 34.67

GC content: 69.09

Gene sequence:

>1281_bases
ATGAAGCCCGCCCGCGACCTCTCGCTCGACTCCCTGCTCGAACGCCTCACGCCGACGCCCGGCGGCTGGATCGCCACCTA
TCGCACCACGACATTGCGCAGCGTGTTCCAGCCCGTGCTGTCGATCACGCACAAGCGGGTCGTCGGTTACGAGGCGCTGC
TGCGGGTCGTCGATTCGAATGGCGCGCTGATCTCCCCCGCTGCCCTGTTCGACAAGACGCGCGCCGACGCCGACGCGCTG
CTGCTCGACCGGCTCGCGCGCTGCCTGCACACGGCCAACTTCGTCGCGCAGGGCATCGGCGACGGTTGGCTGTTCCTGAA
CGTCACGCCGCGCGTGCTCGACTCGGGCCTCGTGCAGCGCGAATTCGTCGAGGCGCTGTGCCGGCATTACGCGCTGCCGC
CGAACCGCATCGTGCTGGAAGTCGTCGAACAGCCCGCGCGCGACGAAGCCGCGCTCGCCCGCACGATCGACATGATCCAG
CATCGCGACTTCCTGATCGCGATCGACGATTTCGGCACGGGGTTCTCGAACTTCGACCGCGTGTGGCGCGCGCGACCCGA
CATCGTCAAGCTCGATCGCTCGCTCGTCGTACGCTCGACCGGTTCGGCCGAGGATCGCCGCATCATGCATCACCTCGTGT
CGATGCTGCATCAGGCCGGTGCGATGGTGCTCGCCGAGGGCGTCGAGAGCGACGACTCGCTGCAGGCGCTGATGGAAGCC
GACATCGATTTCGTGCAGGGTTTCCAGTTCGGCCAGCCCGATGCATCGATCGCGCATGCCAGCGCCGCGGTACCCGCGAT
GCTCGACGCCGCGTGGCAGCGCTTCATCGCGCGCCGGCACACGCCGGTCGTCGCCGAGCAGCCGGGCTTCGACGCGATCG
AGCGGCTCGTGCTGACCGGCGCGGCCGCGTTTTCCGCCAGCGGCAACCTGCAGGACGCCGCGCAACGCGTGTTCGCGGTA
CCGGCCGCGCGCCGCGTGTTCGTCACCGACGAAACCGGCGAGCAGTTCCTGCCGTCGATCGGCGCGCGCGCCGAAGACGG
TCAGGCGGGCGTTACCCGCCTCTCACCGCTCTTCCCGGAAACCCACAGCAACTGGTCGCGACGCCCGTATTTCCAGCGCG
CGATCGCCGCGCCCGGACGCGTCGCGCTGATGGGCCCGCACTTCTCGCTGACGGAAGGCCGCGACTGCTATACGGCCGCC
GTCGCGATCCGCGCGCAGAGCCGGCTCGTCGTGTTCTGCGTCGACTTCGTACTGGACAGCGCCGGGACCGTGATGCGCTA
A

Upstream 100 bases:

>100_bases
GCCTCGATGTCCCACGTCCTTTCGCGTCCGCCGGCGCGTGCGGCTGCTTCAGTGTGGCGGCGCGTTGCCGTTCCGCCGCT
CGACACCGGGCACCGTTGAC

Downstream 100 bases:

>100_bases
CCGGCGCAACGGCGGGCGACTGACGCTCGCGCCAGTCGTTCGTCTCCCGTCCATTCGTCAGTCGGTCACCTTCCCTCTTC
CTGACTTCACCACGCTGCGA

Product: diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 426

Protein sequence:

>426_residues
MKPARDLSLDSLLERLTPTPGGWIATYRTTTLRSVFQPVLSITHKRVVGYEALLRVVDSNGALISPAALFDKTRADADAL
LLDRLARCLHTANFVAQGIGDGWLFLNVTPRVLDSGLVQREFVEALCRHYALPPNRIVLEVVEQPARDEAALARTIDMIQ
HRDFLIAIDDFGTGFSNFDRVWRARPDIVKLDRSLVVRSTGSAEDRRIMHHLVSMLHQAGAMVLAEGVESDDSLQALMEA
DIDFVQGFQFGQPDASIAHASAAVPAMLDAAWQRFIARRHTPVVAEQPGFDAIERLVLTGAAAFSASGNLQDAAQRVFAV
PAARRVFVTDETGEQFLPSIGARAEDGQAGVTRLSPLFPETHSNWSRRPYFQRAIAAPGRVALMGPHFSLTEGRDCYTAA
VAIRAQSRLVVFCVDFVLDSAGTVMR

Sequences:

>Translated_426_residues
MKPARDLSLDSLLERLTPTPGGWIATYRTTTLRSVFQPVLSITHKRVVGYEALLRVVDSNGALISPAALFDKTRADADAL
LLDRLARCLHTANFVAQGIGDGWLFLNVTPRVLDSGLVQREFVEALCRHYALPPNRIVLEVVEQPARDEAALARTIDMIQ
HRDFLIAIDDFGTGFSNFDRVWRARPDIVKLDRSLVVRSTGSAEDRRIMHHLVSMLHQAGAMVLAEGVESDDSLQALMEA
DIDFVQGFQFGQPDASIAHASAAVPAMLDAAWQRFIARRHTPVVAEQPGFDAIERLVLTGAAAFSASGNLQDAAQRVFAV
PAARRVFVTDETGEQFLPSIGARAEDGQAGVTRLSPLFPETHSNWSRRPYFQRAIAAPGRVALMGPHFSLTEGRDCYTAA
VAIRAQSRLVVFCVDFVLDSAGTVMR
>Mature_426_residues
MKPARDLSLDSLLERLTPTPGGWIATYRTTTLRSVFQPVLSITHKRVVGYEALLRVVDSNGALISPAALFDKTRADADAL
LLDRLARCLHTANFVAQGIGDGWLFLNVTPRVLDSGLVQREFVEALCRHYALPPNRIVLEVVEQPARDEAALARTIDMIQ
HRDFLIAIDDFGTGFSNFDRVWRARPDIVKLDRSLVVRSTGSAEDRRIMHHLVSMLHQAGAMVLAEGVESDDSLQALMEA
DIDFVQGFQFGQPDASIAHASAAVPAMLDAAWQRFIARRHTPVVAEQPGFDAIERLVLTGAAAFSASGNLQDAAQRVFAV
PAARRVFVTDETGEQFLPSIGARAEDGQAGVTRLSPLFPETHSNWSRRPYFQRAIAAPGRVALMGPHFSLTEGRDCYTAA
VAIRAQSRLVVFCVDFVLDSAGTVMR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1790496, Length=223, Percent_Identity=26.457399103139, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI87081845, Length=232, Percent_Identity=27.5862068965517, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI87081743, Length=224, Percent_Identity=25.8928571428571, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788849, Length=217, Percent_Identity=26.7281105990783, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87082096, Length=220, Percent_Identity=26.3636363636364, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787055, Length=227, Percent_Identity=27.3127753303965, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081980, Length=251, Percent_Identity=24.3027888446215, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788502, Length=226, Percent_Identity=25.6637168141593, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 46726; Mature: 46726

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPARDLSLDSLLERLTPTPGGWIATYRTTTLRSVFQPVLSITHKRVVGYEALLRVVDSN
CCCCCCCCHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GALISPAALFDKTRADADALLLDRLARCLHTANFVAQGIGDGWLFLNVTPRVLDSGLVQR
CCEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHH
EFVEALCRHYALPPNRIVLEVVEQPARDEAALARTIDMIQHRDFLIAIDDFGTGFSNFDR
HHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH
VWRARPDIVKLDRSLVVRSTGSAEDRRIMHHLVSMLHQAGAMVLAEGVESDDSLQALMEA
HHHCCCCHHHHCCHHEEECCCCHHHHHHHHHHHHHHHHCCHHEEHHCCCCCHHHHHHHHH
DIDFVQGFQFGQPDASIAHASAAVPAMLDAAWQRFIARRHTPVVAEQPGFDAIERLVLTG
CHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHH
AAAFSASGNLQDAAQRVFAVPAARRVFVTDETGEQFLPSIGARAEDGQAGVTRLSPLFPE
HHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHCCCCCCCCCCCHHHHCCCCCC
THSNWSRRPYFQRAIAAPGRVALMGPHFSLTEGRDCYTAAVAIRAQSRLVVFCVDFVLDS
CCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEHHHHHHHHC
AGTVMR
CCCCCC
>Mature Secondary Structure
MKPARDLSLDSLLERLTPTPGGWIATYRTTTLRSVFQPVLSITHKRVVGYEALLRVVDSN
CCCCCCCCHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GALISPAALFDKTRADADALLLDRLARCLHTANFVAQGIGDGWLFLNVTPRVLDSGLVQR
CCEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHH
EFVEALCRHYALPPNRIVLEVVEQPARDEAALARTIDMIQHRDFLIAIDDFGTGFSNFDR
HHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH
VWRARPDIVKLDRSLVVRSTGSAEDRRIMHHLVSMLHQAGAMVLAEGVESDDSLQALMEA
HHHCCCCHHHHCCHHEEECCCCHHHHHHHHHHHHHHHHCCHHEEHHCCCCCHHHHHHHHH
DIDFVQGFQFGQPDASIAHASAAVPAMLDAAWQRFIARRHTPVVAEQPGFDAIERLVLTG
CHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHH
AAAFSASGNLQDAAQRVFAVPAARRVFVTDETGEQFLPSIGARAEDGQAGVTRLSPLFPE
HHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHCCCCCCCCCCCHHHHCCCCCC
THSNWSRRPYFQRAIAAPGRVALMGPHFSLTEGRDCYTAAVAIRAQSRLVVFCVDFVLDS
CCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEHHHHHHHHC
AGTVMR
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]