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The map label for this gene is orn [H]

Identifier: 78065664

GI number: 78065664

Start: 1126561

End: 1127181

Strand: Direct

Name: orn [H]

Synonym: Bcep18194_A4192

Alternate gene names: 78065664

Gene position: 1126561-1127181 (Clockwise)

Preceding gene: 78065660

Following gene: 78065667

Centisome position: 30.5

GC content: 65.06

Gene sequence:

>621_bases
ATGACCGATACCGCCGCTTCCACCAGCCAGCCCGCGCTCGTGCGCAACGAGTTGAACCTCGTCTGGCTCGACATGGAGAT
GACGGGCCTCGACCCGGATAACGACCGCATCATCGAGATCGCGGTCGTCGTGACCAATTCCACGCTCGATATCGCCGTCG
AAGGCCCGGTGTTCGCGATCCACCAGAGCGACGAAACGCTCGCGAAGATGGACGACTGGAACAAGTCGACGCACGGCCGC
TCGGGCCTGATCGACCGCGTGCGTGCATCGACCGTGACCGAAGCGGAAGCCGCCGAGCAACTGCAGGCCTTCCTCGCGCA
GTACGTGTCGCCCGGCAAGTCGCCGATGTGCGGCAACTCGATCTGCCAGGACCGCCGCTTCATGGCGCGCTGGATGCCCG
AATTCGAGCGGTTCTTCCACTACCGCAACCTCGACGTCAGCACGCTCAAGGAGCTGTGCCGCCGCTGGCAGCCCGCGATC
TACAAGGGCTTCCAGAAGCGGGCAATGCACACGGCGCTCGCGGACATCCACGAGTCGATCGACGAGCTGAAGTACTACCG
CGAGCATTTCCTGATTCCGGCCGCGTCTGCTTCGGCCGGCGAGTCCGCGCCGGCCGCCTGA

Upstream 100 bases:

>100_bases
TCTATGCGAGAATTATATGTTCTTGCGGACCGGCCCCGCTGATGCGATGCCGGCCGCCCGGGCGGCGCCGCGCGCCGTCC
GCCATTTTCCAGGATGACTC

Downstream 100 bases:

>100_bases
GCGGGCCGGCACACGCTTAGCGCGGTGCGCGCTGAGCGCTTTTCGGCCGGAACGCCGCGACCACCGCGGCGTCGGTCTCG
ATGTAGGGGCCGCCGATCAG

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MTDTAASTSQPALVRNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAIHQSDETLAKMDDWNKSTHGR
SGLIDRVRASTVTEAEAAEQLQAFLAQYVSPGKSPMCGNSICQDRRFMARWMPEFERFFHYRNLDVSTLKELCRRWQPAI
YKGFQKRAMHTALADIHESIDELKYYREHFLIPAASASAGESAPAA

Sequences:

>Translated_206_residues
MTDTAASTSQPALVRNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAIHQSDETLAKMDDWNKSTHGR
SGLIDRVRASTVTEAEAAEQLQAFLAQYVSPGKSPMCGNSICQDRRFMARWMPEFERFFHYRNLDVSTLKELCRRWQPAI
YKGFQKRAMHTALADIHESIDELKYYREHFLIPAASASAGESAPAA
>Mature_205_residues
TDTAASTSQPALVRNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAIHQSDETLAKMDDWNKSTHGRS
GLIDRVRASTVTEAEAAEQLQAFLAQYVSPGKSPMCGNSICQDRRFMARWMPEFERFFHYRNLDVSTLKELCRRWQPAIY
KGFQKRAMHTALADIHESIDELKYYREHFLIPAASASAGESAPAA

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=173, Percent_Identity=47.9768786127168, Blast_Score=178, Evalue=3e-45,
Organism=Escherichia coli, GI87082382, Length=176, Percent_Identity=61.9318181818182, Blast_Score=239, Evalue=1e-64,
Organism=Caenorhabditis elegans, GI17557752, Length=182, Percent_Identity=42.8571428571429, Blast_Score=162, Evalue=1e-40,
Organism=Saccharomyces cerevisiae, GI6323088, Length=198, Percent_Identity=38.8888888888889, Blast_Score=126, Evalue=3e-30,
Organism=Drosophila melanogaster, GI21355135, Length=174, Percent_Identity=41.3793103448276, Blast_Score=157, Evalue=5e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 23166; Mature: 23035

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDTAASTSQPALVRNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAI
CCCCCCCCCCCHHEECCCCEEEEEEEEECCCCCCCCEEEEEEEEECCEEEEEECCCEEEE
HQSDETLAKMDDWNKSTHGRSGLIDRVRASTVTEAEAAEQLQAFLAQYVSPGKSPMCGNS
ECCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
ICQDRRFMARWMPEFERFFHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESI
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
DELKYYREHFLIPAASASAGESAPAA
HHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TDTAASTSQPALVRNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAI
CCCCCCCCCCHHEECCCCEEEEEEEEECCCCCCCCEEEEEEEEECCEEEEEECCCEEEE
HQSDETLAKMDDWNKSTHGRSGLIDRVRASTVTEAEAAEQLQAFLAQYVSPGKSPMCGNS
ECCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
ICQDRRFMARWMPEFERFFHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESI
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
DELKYYREHFLIPAASASAGESAPAA
HHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA