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The map label for this gene is rarA [H]

Identifier: 78065552

GI number: 78065552

Start: 1008786

End: 1010096

Strand: Direct

Name: rarA [H]

Synonym: Bcep18194_A4080

Alternate gene names: 78065552

Gene position: 1008786-1010096 (Clockwise)

Preceding gene: 78065551

Following gene: 78065554

Centisome position: 27.31

GC content: 66.74

Gene sequence:

>1311_bases
ATGTCCGACCTGTTTCAAGTCGAGCCGCGCCGCCCGCTCGCCGAGGCGCTGCGGCCGAAGACGCTCGCCGAGGTGATCGG
CCAGACGCATTTGCTGGGCGAAGGCAAGCCGCTGCGGCTCGCGTTCGAATCGGGCAAGCCGCATTCGATGATCCTGTGGG
GGCCGCCCGGCGTCGGCAAGACGACGCTCGCCCGGCTCACCGCGCTCGCGTTCGACTGCGAGTTCATTGCGCTGTCCGCG
GTGCTCGGCGGCGTGAAGGACATTCGCGAGTCGATGGAGCAGGCAAAGGACACGCTGAACCGCACCGGCCGCCACACGAT
CCTGTTCGTCGACGAAATCCACCGCTTCAACAAGGGGCAGCAGGACGCGTTGCTGCCGTTCGTCGAGTCGGGGCTCGTGA
CCTTCATCGGCGCGACGACCGAGAACCCGAGCTTCGAGGTCAACTCGGCCTTGCTGTCACGTGCGCAGGTGTACGTGCTG
AAGTCGCTGGACGATGACGAGATGCGCCAGTTGCTGAAGCGCGCACAGGAAATCGCGCTCGACGGCCTGTCGTTCGACGA
AAAGGCGATCGATACGCTGGTCGGCTATGCGGACGGCGACGCGCGGCGCTTCCTGAACCTGCTCGAGCAGGCGCAGACGG
CAGCCACGTCGGCCGGCACCGCGACGATCGATGCCGAATTCGTCAGCAGCGCGATGACGCTGAACGCCCGGCGCTTCGAC
AAGGGCGGCGACAACTTCTACGACCAGATCTCGGCGCTGCACAAGTCGGTGCGCGGGTCGAGCCCGGACGGCGCGCTGTA
CTGGTTCTGCCGGATGATCGACGGCGGCGCGGATCCGAAGTATCTCGCGCGGCGGATCGTGCGGATGGCGTGGGAAGACA
TCGGCCTGGCCGATCCGCGCGCGCTGCAGATGGCGAACGACGCGGCCGAAACCTACGAGCGGCTCGGCTCGCCGGAAGGC
GAGCTCGCACTCGGGCAAGCGGTCATCTATCTCGCATGCGCGGCGAAGAGCAACGCGGGCTACAACGCGTTCAACCAGGC
GATGGCGTTCGTGAAGCAGGACAAGTCGCGCGAGGTGCCCGTGCATCTGCGCAACGCGCCGACCAAGCTGATGAAGGAAC
TCGGCTACGGTCACGCTTACCGTTACGCGCACGACGAGCCGAACGCGTATGCGGCCGGCGAGACGTACCTGCCGGACGGG
ATGCGCGAGCCGCGTTGGTACAAGCCGGTGCCGCGCGGGCTCGAATCGAAGATCGCCGACAAGCTCGCGTGGCTGCGCGA
CCTCGATCGCGAGGCCGGCAAGAAGGACTGA

Upstream 100 bases:

>100_bases
GGGCACCGGGCGCAGGCACGGCGGTGCTTTCGCGCCGCTGTCATAATGTCGGGTCCGGCGGCCGGTTCGGCCGCCATTGT
TTGATGTGGAGCGAGGGTTC

Downstream 100 bases:

>100_bases
CGGGAAGGCGCGCGGTGCAGCCCGGCCGGCGCCGTCGCGAACGCGTCAGCGCTTGCGGGCCGGCTGCTTCTTCCAGTAGC
CGAACGGCTCCTGATGGCAC

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 435

Protein sequence:

>436_residues
MSDLFQVEPRRPLAEALRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHSMILWGPPGVGKTTLARLTALAFDCEFIALSA
VLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVL
KSLDDDEMRQLLKRAQEIALDGLSFDEKAIDTLVGYADGDARRFLNLLEQAQTAATSAGTATIDAEFVSSAMTLNARRFD
KGGDNFYDQISALHKSVRGSSPDGALYWFCRMIDGGADPKYLARRIVRMAWEDIGLADPRALQMANDAAETYERLGSPEG
ELALGQAVIYLACAAKSNAGYNAFNQAMAFVKQDKSREVPVHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYLPDG
MREPRWYKPVPRGLESKIADKLAWLRDLDREAGKKD

Sequences:

>Translated_436_residues
MSDLFQVEPRRPLAEALRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHSMILWGPPGVGKTTLARLTALAFDCEFIALSA
VLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVL
KSLDDDEMRQLLKRAQEIALDGLSFDEKAIDTLVGYADGDARRFLNLLEQAQTAATSAGTATIDAEFVSSAMTLNARRFD
KGGDNFYDQISALHKSVRGSSPDGALYWFCRMIDGGADPKYLARRIVRMAWEDIGLADPRALQMANDAAETYERLGSPEG
ELALGQAVIYLACAAKSNAGYNAFNQAMAFVKQDKSREVPVHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYLPDG
MREPRWYKPVPRGLESKIADKLAWLRDLDREAGKKD
>Mature_435_residues
SDLFQVEPRRPLAEALRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHSMILWGPPGVGKTTLARLTALAFDCEFIALSAV
LGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLK
SLDDDEMRQLLKRAQEIALDGLSFDEKAIDTLVGYADGDARRFLNLLEQAQTAATSAGTATIDAEFVSSAMTLNARRFDK
GGDNFYDQISALHKSVRGSSPDGALYWFCRMIDGGADPKYLARRIVRMAWEDIGLADPRALQMANDAAETYERLGSPEGE
LALGQAVIYLACAAKSNAGYNAFNQAMAFVKQDKSREVPVHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYLPDGM
REPRWYKPVPRGLESKIADKLAWLRDLDREAGKKD

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=441, Percent_Identity=42.1768707482993, Blast_Score=315, Evalue=4e-86,
Organism=Homo sapiens, GI18426904, Length=441, Percent_Identity=38.3219954648526, Blast_Score=264, Evalue=1e-70,
Organism=Escherichia coli, GI1787119, Length=448, Percent_Identity=53.7946428571429, Blast_Score=456, Evalue=1e-129,
Organism=Escherichia coli, GI1786676, Length=248, Percent_Identity=30.241935483871, Blast_Score=79, Evalue=5e-16,
Organism=Saccharomyces cerevisiae, GI6324111, Length=409, Percent_Identity=41.5647921760391, Blast_Score=292, Evalue=6e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48160; Mature: 48029

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLFQVEPRRPLAEALRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHSMILWGPPGVGK
CCCCCCCCCCCCHHHHHCHHHHHHHHCCHHCCCCCCCEEEEEECCCCCEEEEECCCCCCH
TTLARLTALAFDCEFIALSAVLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQ
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHCCCC
QDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLDDDEMRQLLKRAQEIAL
CHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
DGLSFDEKAIDTLVGYADGDARRFLNLLEQAQTAATSAGTATIDAEFVSSAMTLNARRFD
CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHCC
KGGDNFYDQISALHKSVRGSSPDGALYWFCRMIDGGADPKYLARRIVRMAWEDIGLADPR
CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCH
ALQMANDAAETYERLGSPEGELALGQAVIYLACAAKSNAGYNAFNQAMAFVKQDKSREVP
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCC
VHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYLPDGMREPRWYKPVPRGLESKIAD
EEECCCHHHHHHHCCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH
KLAWLRDLDREAGKKD
HHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SDLFQVEPRRPLAEALRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHSMILWGPPGVGK
CCCCCCCCCCCHHHHHCHHHHHHHHCCHHCCCCCCCEEEEEECCCCCEEEEECCCCCCH
TTLARLTALAFDCEFIALSAVLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQ
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHCCCC
QDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLDDDEMRQLLKRAQEIAL
CHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
DGLSFDEKAIDTLVGYADGDARRFLNLLEQAQTAATSAGTATIDAEFVSSAMTLNARRFD
CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHCC
KGGDNFYDQISALHKSVRGSSPDGALYWFCRMIDGGADPKYLARRIVRMAWEDIGLADPR
CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCH
ALQMANDAAETYERLGSPEGELALGQAVIYLACAAKSNAGYNAFNQAMAFVKQDKSREVP
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCC
VHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYLPDGMREPRWYKPVPRGLESKIAD
EEECCCHHHHHHHCCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH
KLAWLRDLDREAGKKD
HHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]