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The map label for this gene is ykgD [C]

Identifier: 78065353

GI number: 78065353

Start: 796785

End: 797732

Strand: Direct

Name: ykgD [C]

Synonym: Bcep18194_A3879

Alternate gene names: 78065353

Gene position: 796785-797732 (Clockwise)

Preceding gene: 78065350

Following gene: 78065354

Centisome position: 21.57

GC content: 72.89

Gene sequence:

>948_bases
ATGGATGCGTTGAGTCAACTCCTGTCGCTGGGCCGCAGCCATGTCGAACTCGACGTGCGCTGCCTGCTCGACGGGCCGTT
CGCGATGCCGCACGACCCGCTGCCGTCCGGCGAGGCGGCGTTTCACCTGGTGCTGGCCGGAACCTGCCGGCTGCGTACCG
CGGACGGGCGCACGCTGCAACTCGCCGAAGGCGATTTCGTGCTGCTGCCCGCAGGTGGCGCGCACGATCTGCTCGACGCA
GGGGCCGGCCGGTCGCGGCCGGTTGCGGCGTTGCGCGAACAGGGCGCCGGCGGCGGCGCGGTGCTGCCGGTCAAGTCGAA
CCTCGATCCGGCCGAACCGGGTGGCGCGAGCGTGGACCTGCTGTGCGGACGGTTCGTCTATGCGCGCGGCGCGGGCGAAC
TGCTGATGCGCACGCTGCCGCATGTGCTGCATGTCGGGTTGCGCGAGGCGTCGGGGTTCGCGCCGCTGCAACTGCTGACG
AGCGTGCTGCGCACCGAGGCATCGAACGGGCAGCCGGGCGCCGGCGCGATCGTGAACGCGCTCGGCCAGGCGCTGCTCGC
GTACGCATTGCGGGCATACGGTCGCGGTGCACGCGTACCGTCCGGCTGGCTGGCGCTGGCGGCCGACGCGCGGCTCGGCC
CGTCGGTCCAGGCCGTGCTGCAGGCGCCGGAAAAACCGTGGACGGTCGAGTCGCTCGGCGACGCCTCCGCGATGTCGCGC
GCGACGTACGCGCGGCATTTCCGCGAGCGGGCCGGGATGAGCGTCGGCGCGTTCGTCGCGCAGATCCGGATGATGCACGC
GTGCGCGCTGCTGCTGGACACGCAGCGCGGGCAGGCGGAGATCGGCCAGGCGGTCGGTTACCAGTCCGAGGCCGCCTTCG
GCAAGGCGTTTCGCGCGGTGCTCGGCACGACGCCGGGGCGCTGGCGGCGGGCGCAGCGCGAATTGTAA

Upstream 100 bases:

>100_bases
GGCGGCGGGCGCCGCGATCTCGGGCGATGCAGGGCTATTCTGATCGTTCGCGCTGAGGGTTTCGATACGCTAGAGTGTCA
ATTTTTAGCGCGATCGTCTC

Downstream 100 bases:

>100_bases
GACTGCAAGCGCGGCGTCTTGCCGCGCACCAAAGCTGCTACCATGCGCGAAACGCAGTTCAACGAAAACGATTTCGAACA
AGAAGAAAGAGAGGGCAAAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MDALSQLLSLGRSHVELDVRCLLDGPFAMPHDPLPSGEAAFHLVLAGTCRLRTADGRTLQLAEGDFVLLPAGGAHDLLDA
GAGRSRPVAALREQGAGGGAVLPVKSNLDPAEPGGASVDLLCGRFVYARGAGELLMRTLPHVLHVGLREASGFAPLQLLT
SVLRTEASNGQPGAGAIVNALGQALLAYALRAYGRGARVPSGWLALAADARLGPSVQAVLQAPEKPWTVESLGDASAMSR
ATYARHFRERAGMSVGAFVAQIRMMHACALLLDTQRGQAEIGQAVGYQSEAAFGKAFRAVLGTTPGRWRRAQREL

Sequences:

>Translated_315_residues
MDALSQLLSLGRSHVELDVRCLLDGPFAMPHDPLPSGEAAFHLVLAGTCRLRTADGRTLQLAEGDFVLLPAGGAHDLLDA
GAGRSRPVAALREQGAGGGAVLPVKSNLDPAEPGGASVDLLCGRFVYARGAGELLMRTLPHVLHVGLREASGFAPLQLLT
SVLRTEASNGQPGAGAIVNALGQALLAYALRAYGRGARVPSGWLALAADARLGPSVQAVLQAPEKPWTVESLGDASAMSR
ATYARHFRERAGMSVGAFVAQIRMMHACALLLDTQRGQAEIGQAVGYQSEAAFGKAFRAVLGTTPGRWRRAQREL
>Mature_315_residues
MDALSQLLSLGRSHVELDVRCLLDGPFAMPHDPLPSGEAAFHLVLAGTCRLRTADGRTLQLAEGDFVLLPAGGAHDLLDA
GAGRSRPVAALREQGAGGGAVLPVKSNLDPAEPGGASVDLLCGRFVYARGAGELLMRTLPHVLHVGLREASGFAPLQLLT
SVLRTEASNGQPGAGAIVNALGQALLAYALRAYGRGARVPSGWLALAADARLGPSVQAVLQAPEKPWTVESLGDASAMSR
ATYARHFRERAGMSVGAFVAQIRMMHACALLLDTQRGQAEIGQAVGYQSEAAFGKAFRAVLGTTPGRWRRAQREL

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=316, Percent_Identity=27.2151898734177, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32964; Mature: 32964

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDALSQLLSLGRSHVELDVRCLLDGPFAMPHDPLPSGEAAFHLVLAGTCRLRTADGRTLQ
CHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCEEEEECCCCEEE
LAEGDFVLLPAGGAHDLLDAGAGRSRPVAALREQGAGGGAVLPVKSNLDPAEPGGASVDL
EECCCEEEEECCCCHHHHHCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHH
LCGRFVYARGAGELLMRTLPHVLHVGLREASGFAPLQLLTSVLRTEASNGQPGAGAIVNA
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHH
LGQALLAYALRAYGRGARVPSGWLALAADARLGPSVQAVLQAPEKPWTVESLGDASAMSR
HHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCHHHCCCHHHHHH
ATYARHFRERAGMSVGAFVAQIRMMHACALLLDTQRGQAEIGQAVGYQSEAAFGKAFRAV
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH
LGTTPGRWRRAQREL
HCCCCHHHHHHHHCC
>Mature Secondary Structure
MDALSQLLSLGRSHVELDVRCLLDGPFAMPHDPLPSGEAAFHLVLAGTCRLRTADGRTLQ
CHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCEEEEECCCCEEE
LAEGDFVLLPAGGAHDLLDAGAGRSRPVAALREQGAGGGAVLPVKSNLDPAEPGGASVDL
EECCCEEEEECCCCHHHHHCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHH
LCGRFVYARGAGELLMRTLPHVLHVGLREASGFAPLQLLTSVLRTEASNGQPGAGAIVNA
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHH
LGQALLAYALRAYGRGARVPSGWLALAADARLGPSVQAVLQAPEKPWTVESLGDASAMSR
HHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCHHHCCCHHHHHH
ATYARHFRERAGMSVGAFVAQIRMMHACALLLDTQRGQAEIGQAVGYQSEAAFGKAFRAV
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH
LGTTPGRWRRAQREL
HCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]