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The map label for this gene is dedA [H]

Identifier: 78065328

GI number: 78065328

Start: 762064

End: 762747

Strand: Direct

Name: dedA [H]

Synonym: Bcep18194_A3854

Alternate gene names: 78065328

Gene position: 762064-762747 (Clockwise)

Preceding gene: 78065325

Following gene: 78065333

Centisome position: 20.63

GC content: 62.57

Gene sequence:

>684_bases
TTGGATACGCTGCTTCATTTCGTCAACCTTGTCCTGCATATCGACGCTTTCCTCGGCGATTTCATCCGGCAGTACGGTGC
GTGGGTCTATCTGGTGCTGTTCCTGATCGTGTTCTGCGAGACGGGGCTCGTCGTGTTCCCGTTCCTGCCCGGCGATTCGC
TGCTGTTCATCGGCGGCGCGTTCGCGGCGACGGGCGAGATGAATGTCGGCCTGCTGATCGTGCTGCTGCTCGTCGCGGCG
ATTACCGGCAACACGGTGAACTACATGATCGGCCGCTGGGTCGGCCCGAAGGTGTTCAATACGCATATCCCGGTGCTCGA
ACGCTTCCTCGATCGCACCGCGCTGCAGAAAACCCACTCGTTCTACGACAAGCACGGCGGCAAGACGATCGTGCTCGCGC
GCTTCATCCCGGTCGTGCGTACGTTCGCGCCGTTCGTTGCGGGCGCGTCGTCGATGAGCGTCGCGCGCTTCCAGCTTTTC
AACGTGATCGGTGCGCTGGTGTGGGTGCTGCTGCTCGTGCTGCTCGGCTATTTCTTCGGCAACATCCCGTTTATCCGCCA
GTACCTGAACGTGATCGTGCTGGTCGGGATCGGCGCGGCGGTCGTGCCGGTCGCGCTCGGTGCGGTGTGGAAGCTGGTGC
GCGGGCGGCAGTCGGATAATGCGCAGAAAACGGGCGGGCGTTGA

Upstream 100 bases:

>100_bases
TAGTTTCGGTATCATGGGTTCGTTACACGCACCGCCTTGACCGGCGGGCGCTTCAGCCTTTTTCGGCCGTTCCGGCCCTT
TCGCCATCGAGGAATCGCAT

Downstream 100 bases:

>100_bases
GCGGGAGCGTTTCGTTTTCTTCGCGGTGCAATAAAAAAGCGTGGCAGGTGCCACGCTTTTTTTTCGTCCGGTGCCGCCGT
TACGCGTTGCGATGCGAGAT

Product: DedA family transmembrane protein

Products: NA

Alternate protein names: Protein DSG-1 [H]

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MDTLLHFVNLVLHIDAFLGDFIRQYGAWVYLVLFLIVFCETGLVVFPFLPGDSLLFIGGAFAATGEMNVGLLIVLLLVAA
ITGNTVNYMIGRWVGPKVFNTHIPVLERFLDRTALQKTHSFYDKHGGKTIVLARFIPVVRTFAPFVAGASSMSVARFQLF
NVIGALVWVLLLVLLGYFFGNIPFIRQYLNVIVLVGIGAAVVPVALGAVWKLVRGRQSDNAQKTGGR

Sequences:

>Translated_227_residues
MDTLLHFVNLVLHIDAFLGDFIRQYGAWVYLVLFLIVFCETGLVVFPFLPGDSLLFIGGAFAATGEMNVGLLIVLLLVAA
ITGNTVNYMIGRWVGPKVFNTHIPVLERFLDRTALQKTHSFYDKHGGKTIVLARFIPVVRTFAPFVAGASSMSVARFQLF
NVIGALVWVLLLVLLGYFFGNIPFIRQYLNVIVLVGIGAAVVPVALGAVWKLVRGRQSDNAQKTGGR
>Mature_227_residues
MDTLLHFVNLVLHIDAFLGDFIRQYGAWVYLVLFLIVFCETGLVVFPFLPGDSLLFIGGAFAATGEMNVGLLIVLLLVAA
ITGNTVNYMIGRWVGPKVFNTHIPVLERFLDRTALQKTHSFYDKHGGKTIVLARFIPVVRTFAPFVAGASSMSVARFQLF
NVIGALVWVLLLVLLGYFFGNIPFIRQYLNVIVLVGIGAAVVPVALGAVWKLVRGRQSDNAQKTGGR

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=205, Percent_Identity=53.1707317073171, Blast_Score=221, Evalue=4e-59,
Organism=Escherichia coli, GI1789481, Length=164, Percent_Identity=41.4634146341463, Blast_Score=117, Evalue=5e-28,
Organism=Escherichia coli, GI1789384, Length=169, Percent_Identity=34.9112426035503, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24941; Mature: 24941

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLLHFVNLVLHIDAFLGDFIRQYGAWVYLVLFLIVFCETGLVVFPFLPGDSLLFIGGA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCH
FAATGEMNVGLLIVLLLVAAITGNTVNYMIGRWVGPKVFNTHIPVLERFLDRTALQKTHS
HHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHH
FYDKHGGKTIVLARFIPVVRTFAPFVAGASSMSVARFQLFNVIGALVWVLLLVLLGYFFG
HHHHCCCCEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NIPFIRQYLNVIVLVGIGAAVVPVALGAVWKLVRGRQSDNAQKTGGR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MDTLLHFVNLVLHIDAFLGDFIRQYGAWVYLVLFLIVFCETGLVVFPFLPGDSLLFIGGA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCH
FAATGEMNVGLLIVLLLVAAITGNTVNYMIGRWVGPKVFNTHIPVLERFLDRTALQKTHS
HHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHH
FYDKHGGKTIVLARFIPVVRTFAPFVAGASSMSVARFQLFNVIGALVWVLLLVLLGYFFG
HHHHCCCCEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NIPFIRQYLNVIVLVGIGAAVVPVALGAVWKLVRGRQSDNAQKTGGR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]