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The map label for this gene is omlA [H]

Identifier: 78065212

GI number: 78065212

Start: 626207

End: 627025

Strand: Direct

Name: omlA [H]

Synonym: Bcep18194_A3736

Alternate gene names: 78065212

Gene position: 626207-627025 (Clockwise)

Preceding gene: 78065210

Following gene: 78065213

Centisome position: 16.95

GC content: 72.16

Gene sequence:

>819_bases
ATGCGGAGTGTCATCATCGCTGCCGCCGCCGTTGCCGCGCTGGCTGGTTGTTCGTCGTACGACAGCGTAACGCAGCGCAT
CGCGCAGAGCATCACCCCCTACCGGATTACCGTCGTGCAAGGCAACTTCGTGTCGCAGGAGAAGGCCGCACAGCTGCAGG
TCGGCATGTCGCGCGAGCAGGTGCGCGCGCTGCTCGGCACCCCGTTGCTGGCCGACATGTTCCACGCCGACCGCTGGGAT
TACCTCTTCTACTTCAAGCGCGGCTCGACGGCAGTCGTCCAGCAGCGCGATCTCGTCGTGACGTTCTCGGGCGATCGCGT
GGCGGGCTGGACGGGGGCGGACAACCTGCCTTCCGAACTCGACCTGCTGGCCGATATCGACGGCGACCGCGGCGGCAAGA
AGGCGAAGGCGGCCGCAGCGGCGAAGAAGGCCGCCGAGGCTGCCGCAGCCGCGAGCGCCGCGCAAGCGGCAGCGAGCGCG
CCGGCGCCGGAGGCTGTCGCCAGCCCGTCCGCCGCGCCGGCGTCCGGTGCGGCGGTCGACCAGGATGCGAACGCGCAGGC
CGCCCGTGCGGCCAACCGTGCGACCAACCAGGTGTCGGGTCAGGGCTCGGCCGCACGGCGGTTCGCGCCGTCCACGCAGG
CTGCCGGCGGTGCGCCGGTGCCGGGCGGCCAGCCGCCGGGCGCGGTTCCGGCGATCCAGCCGCAGTTCCAGTTCCATCGT
CCGCCGCAGCCGAACGCGTCGAACGAGGCGTCGCCGCCGGTCGGCCCGCAAGGCTCGGACACGCTGCAGAACCAGCCGAT
CACCGCGCCGGCGCAGTAA

Upstream 100 bases:

>100_bases
CCGGCTTTTCGCCGTTCCAGAAACACGCGCGGCCTGCACACGGGCCTGCACGGTGAGGGAAATGATTCCAGAATCTCTTT
CGCACTTTCAGAGGAGCCGC

Downstream 100 bases:

>100_bases
GTCCGCGTGCGGAAACCGGGCGGCATGAGCCGCCCGTCTTTAGACCTGTCGTGTAGAAAGCCATGAAGATTGCGATTGCC
GGTGCATCGGGCCGAATGGG

Product: outer membrane lipoprotein, SmpA/OmlA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MRSVIIAAAAVAALAGCSSYDSVTQRIAQSITPYRITVVQGNFVSQEKAAQLQVGMSREQVRALLGTPLLADMFHADRWD
YLFYFKRGSTAVVQQRDLVVTFSGDRVAGWTGADNLPSELDLLADIDGDRGGKKAKAAAAAKKAAEAAAAASAAQAAASA
PAPEAVASPSAAPASGAAVDQDANAQAARAANRATNQVSGQGSAARRFAPSTQAAGGAPVPGGQPPGAVPAIQPQFQFHR
PPQPNASNEASPPVGPQGSDTLQNQPITAPAQ

Sequences:

>Translated_272_residues
MRSVIIAAAAVAALAGCSSYDSVTQRIAQSITPYRITVVQGNFVSQEKAAQLQVGMSREQVRALLGTPLLADMFHADRWD
YLFYFKRGSTAVVQQRDLVVTFSGDRVAGWTGADNLPSELDLLADIDGDRGGKKAKAAAAAKKAAEAAAAASAAQAAASA
PAPEAVASPSAAPASGAAVDQDANAQAARAANRATNQVSGQGSAARRFAPSTQAAGGAPVPGGQPPGAVPAIQPQFQFHR
PPQPNASNEASPPVGPQGSDTLQNQPITAPAQ
>Mature_272_residues
MRSVIIAAAAVAALAGCSSYDSVTQRIAQSITPYRITVVQGNFVSQEKAAQLQVGMSREQVRALLGTPLLADMFHADRWD
YLFYFKRGSTAVVQQRDLVVTFSGDRVAGWTGADNLPSELDLLADIDGDRGGKKAKAAAAAKKAAEAAAAASAAQAAASA
PAPEAVASPSAAPASGAAVDQDANAQAARAANRATNQVSGQGSAARRFAPSTQAAGGAPVPGGQPPGAVPAIQPQFQFHR
PPQPNASNEASPPVGPQGSDTLQNQPITAPAQ

Specific function: May have a structural role in maintaining the cell envelope integrity [H]

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family [H]

Homologues:

Organism=Escherichia coli, GI87082138, Length=120, Percent_Identity=35.8333333333333, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007450 [H]

Pfam domain/function: PF04355 SmpA_OmlA [H]

EC number: NA

Molecular weight: Translated: 27619; Mature: 27619

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSVIIAAAAVAALAGCSSYDSVTQRIAQSITPYRITVVQGNFVSQEKAAQLQVGMSREQ
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCHHH
VRALLGTPLLADMFHADRWDYLFYFKRGSTAVVQQRDLVVTFSGDRVAGWTGADNLPSEL
HHHHHCCHHHHHHHHCCCCCEEEEEECCCEEEEEECCEEEEECCCEEECCCCCCCCCHHH
DLLADIDGDRGGKKAKAAAAAKKAAEAAAAASAAQAAASAPAPEAVASPSAAPASGAAVD
HHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCC
QDANAQAARAANRATNQVSGQGSAARRFAPSTQAAGGAPVPGGQPPGAVPAIQPQFQFHR
CCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PPQPNASNEASPPVGPQGSDTLQNQPITAPAQ
CCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCC
>Mature Secondary Structure
MRSVIIAAAAVAALAGCSSYDSVTQRIAQSITPYRITVVQGNFVSQEKAAQLQVGMSREQ
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCHHH
VRALLGTPLLADMFHADRWDYLFYFKRGSTAVVQQRDLVVTFSGDRVAGWTGADNLPSEL
HHHHHCCHHHHHHHHCCCCCEEEEEECCCEEEEEECCEEEEECCCEEECCCCCCCCCHHH
DLLADIDGDRGGKKAKAAAAAKKAAEAAAAASAAQAAASAPAPEAVASPSAAPASGAAVD
HHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCC
QDANAQAARAANRATNQVSGQGSAARRFAPSTQAAGGAPVPGGQPPGAVPAIQPQFQFHR
CCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PPQPNASNEASPPVGPQGSDTLQNQPITAPAQ
CCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973334 [H]