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The map label for this gene is p49 [H]

Identifier: 78048453

GI number: 78048453

Start: 3294423

End: 3296042

Strand: Reverse

Name: p49 [H]

Synonym: XCV2897

Alternate gene names: 78048453

Gene position: 3296042-3294423 (Counterclockwise)

Preceding gene: 78048457

Following gene: 78048449

Centisome position: 63.65

GC content: 65.31

Gene sequence:

>1620_bases
ATGAGCGGTGCTATATACCAGTGCATGCCCGTCGCCTCTGAACCCCTGGATGCACTGATCATCGGCGCCGGCCACAACGG
GCTGGTGTGCGCCGCCTATCTGGCCAAGGCTGGTAAACGGGTGCTGGTGTTGGAAGCGCGCGACGTGGTTGGCGGTGCGG
CGGTGACCGAGGAGTTTCATCCCGGTTTCCGCAATTCGGTGGCGGCGTACACGGTGTCGTTGCTGCAACCCAAGGTCATC
GCCGATCTCGCACTGGAGCGCCATGGCCTGCACGTGGTGCCGCGACGTCTCAAAAATTTTCTGCCGTTGCCGAACGGTGA
CTATTTGCTTGCCGGGGCAGGGCGCACGGCACAGGAAGTTGCCAGGTTTTCAGCGCGGGATGCGGCCGCATTGCCCGCCT
ACGAAGCGCGGTTGGAGCAGTTGGCCGACGTATTGCGTGCGCTGGCCTTGCAGCCACCGCCTGATGTCACCGATGGCGGC
TGGCTACAGGCATTGCCGCAGCTATGGCGGGCAGGCAAGCTCGGGCTGCAGTTGCAGGGCCTGCCGCTGACACTGCGCCA
GGAGCTGTTGGACCTGTTTACGATTTCAGCGGCCGAATATCTGGATCGCTGGTTCGAAAGCGCGCCGATCAAGGCCTTGT
TCGGCTTCGATGGCATTGTCGGCAATTACGCCAGTCCCCACACGCCGGGTACCGCATACGTGTTGTTGCACCACGTGTTC
GGGCAGAGCAACGGGGTCAAGGGGGCATGGGGCCACGCCATCGGTGGCATGGGTGCGATCACTCAGGCCATGGCCGCCAG
CGCGCGCGAGTACGGCGTGCAGATCCGTACCGGCTGCGTGGTGGAGCGCGTGTTGGTGGAGCAGGGGCGTGCGGTCGGTG
TCGTCACGACCGGCGGTGAGACGATCCACGCCCGCGCGATCGTGGCCAACGTCAACCCGAAACTGCTGTATCAGCGCCTG
ATGCGGCCAGGCGACGTGCCTGCGACAACGCGCGAATGTATTGCCCATTACCGCTGCGGGTCGGGCACCTTCCGCATGAA
TGTCGCACTCTCGCGCCTGCCGGACTTCACCGCGTTGCCCGGCGACGGCGATCACCTGACCGCCGGCATCATCATGGCAC
CGAGCCTGGACTACATGGACCGCGCCTGGCATGACGCGCGCGCGTTGGGATGGTCGCGTGAGCCCGTGGTCGAACTGCTC
ATTCCCAGCACCCTGGACGACACCCTTGCGCCGCCTGGTCAGCATGTCGCCAGCCTGTTCTGCCAGCACGTGGCACCGCA
ACTGCCCGATGGCGGGCAGTGGGACGATTATCGCGACGAGGTGGCCGATCTGATGATCGCAACGGTCGAGCGCTACGCGC
CCGGATTCGCGGCATCGGTCCTGGGCCGGCAGATCCTCAGCCCGCTCGATCTGGAACGCATCTTCGGCCTGGTTGGCGGC
GACATCTTTCACGGCGCCCTCAGCCTCAACCAACTTTTCAGCGCGCGCCCGCTGCTGGGGCAGGGTGCCTATCGCGGCGC
GGTGCCGGGGTTGTATTTGTGCGGGTCGGGCACGCATCCGGGCGGTGGTGTGACCGGTGCACCCGGACATAATGCGGCGC
GGGTGATTTTGGGTGGGTGA

Upstream 100 bases:

>100_bases
CGGCCGCTCTTCGCCTACCACCTGCGCGCGCCGCCGCAGTGCTGCATTGTTAGCGGCGGGCAGGCGCTCATACGCTGCCG
TTGACAGATGGTGGGCGCAG

Downstream 100 bases:

>100_bases
AAGCTCACCTTAAGACACTCGACGCATAAAAAAAGGCCTCTGAAACCAGAGGCCTGGAGCAAGAACATCCACTGCAACGA
AAGCGCCATTTAGACGCTTC

Product: phytoene dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 539; Mature: 538

Protein sequence:

>539_residues
MSGAIYQCMPVASEPLDALIIGAGHNGLVCAAYLAKAGKRVLVLEARDVVGGAAVTEEFHPGFRNSVAAYTVSLLQPKVI
ADLALERHGLHVVPRRLKNFLPLPNGDYLLAGAGRTAQEVARFSARDAAALPAYEARLEQLADVLRALALQPPPDVTDGG
WLQALPQLWRAGKLGLQLQGLPLTLRQELLDLFTISAAEYLDRWFESAPIKALFGFDGIVGNYASPHTPGTAYVLLHHVF
GQSNGVKGAWGHAIGGMGAITQAMAASAREYGVQIRTGCVVERVLVEQGRAVGVVTTGGETIHARAIVANVNPKLLYQRL
MRPGDVPATTRECIAHYRCGSGTFRMNVALSRLPDFTALPGDGDHLTAGIIMAPSLDYMDRAWHDARALGWSREPVVELL
IPSTLDDTLAPPGQHVASLFCQHVAPQLPDGGQWDDYRDEVADLMIATVERYAPGFAASVLGRQILSPLDLERIFGLVGG
DIFHGALSLNQLFSARPLLGQGAYRGAVPGLYLCGSGTHPGGGVTGAPGHNAARVILGG

Sequences:

>Translated_539_residues
MSGAIYQCMPVASEPLDALIIGAGHNGLVCAAYLAKAGKRVLVLEARDVVGGAAVTEEFHPGFRNSVAAYTVSLLQPKVI
ADLALERHGLHVVPRRLKNFLPLPNGDYLLAGAGRTAQEVARFSARDAAALPAYEARLEQLADVLRALALQPPPDVTDGG
WLQALPQLWRAGKLGLQLQGLPLTLRQELLDLFTISAAEYLDRWFESAPIKALFGFDGIVGNYASPHTPGTAYVLLHHVF
GQSNGVKGAWGHAIGGMGAITQAMAASAREYGVQIRTGCVVERVLVEQGRAVGVVTTGGETIHARAIVANVNPKLLYQRL
MRPGDVPATTRECIAHYRCGSGTFRMNVALSRLPDFTALPGDGDHLTAGIIMAPSLDYMDRAWHDARALGWSREPVVELL
IPSTLDDTLAPPGQHVASLFCQHVAPQLPDGGQWDDYRDEVADLMIATVERYAPGFAASVLGRQILSPLDLERIFGLVGG
DIFHGALSLNQLFSARPLLGQGAYRGAVPGLYLCGSGTHPGGGVTGAPGHNAARVILGG
>Mature_538_residues
SGAIYQCMPVASEPLDALIIGAGHNGLVCAAYLAKAGKRVLVLEARDVVGGAAVTEEFHPGFRNSVAAYTVSLLQPKVIA
DLALERHGLHVVPRRLKNFLPLPNGDYLLAGAGRTAQEVARFSARDAAALPAYEARLEQLADVLRALALQPPPDVTDGGW
LQALPQLWRAGKLGLQLQGLPLTLRQELLDLFTISAAEYLDRWFESAPIKALFGFDGIVGNYASPHTPGTAYVLLHHVFG
QSNGVKGAWGHAIGGMGAITQAMAASAREYGVQIRTGCVVERVLVEQGRAVGVVTTGGETIHARAIVANVNPKLLYQRLM
RPGDVPATTRECIAHYRCGSGTFRMNVALSRLPDFTALPGDGDHLTAGIIMAPSLDYMDRAWHDARALGWSREPVVELLI
PSTLDDTLAPPGQHVASLFCQHVAPQLPDGGQWDDYRDEVADLMIATVERYAPGFAASVLGRQILSPLDLERIFGLVGGD
IFHGALSLNQLFSARPLLGQGAYRGAVPGLYLCGSGTHPGGGVTGAPGHNAARVILGG

Specific function: Unknown

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI229577391, Length=546, Percent_Identity=42.3076923076923, Blast_Score=384, Evalue=1e-106,
Organism=Caenorhabditis elegans, GI17540238, Length=528, Percent_Identity=39.7727272727273, Blast_Score=376, Evalue=1e-104,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57238; Mature: 57107

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGAIYQCMPVASEPLDALIIGAGHNGLVCAAYLAKAGKRVLVLEARDVVGGAAVTEEFH
CCCCCEEECCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHCCHHHHHHHC
PGFRNSVAAYTVSLLQPKVIADLALERHGLHVVPRRLKNFLPLPNGDYLLAGAGRTAQEV
CCCCHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEECCCCCHHHH
ARFSARDAAALPAYEARLEQLADVLRALALQPPPDVTDGGWLQALPQLWRAGKLGLQLQG
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEC
LPLTLRQELLDLFTISAAEYLDRWFESAPIKALFGFDGIVGNYASPHTPGTAYVLLHHVF
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHCCCCCCCCCCHHHHHHHHHH
GQSNGVKGAWGHAIGGMGAITQAMAASAREYGVQIRTGCVVERVLVEQGRAVGVVTTGGE
CCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHCCCEEEEEECCCC
TIHARAIVANVNPKLLYQRLMRPGDVPATTRECIAHYRCGSGTFRMNVALSRLPDFTALP
EEEEEEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEEHHHHCCCCCCCC
GDGDHLTAGIIMAPSLDYMDRAWHDARALGWSREPVVELLIPSTLDDTLAPPGQHVASLF
CCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHH
CQHVAPQLPDGGQWDDYRDEVADLMIATVERYAPGFAASVLGRQILSPLDLERIFGLVGG
HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHH
DIFHGALSLNQLFSARPLLGQGAYRGAVPGLYLCGSGTHPGGGVTGAPGHNAARVILGG
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECC
>Mature Secondary Structure 
SGAIYQCMPVASEPLDALIIGAGHNGLVCAAYLAKAGKRVLVLEARDVVGGAAVTEEFH
CCCCEEECCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHCCHHHHHHHC
PGFRNSVAAYTVSLLQPKVIADLALERHGLHVVPRRLKNFLPLPNGDYLLAGAGRTAQEV
CCCCHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEECCCCCHHHH
ARFSARDAAALPAYEARLEQLADVLRALALQPPPDVTDGGWLQALPQLWRAGKLGLQLQG
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEC
LPLTLRQELLDLFTISAAEYLDRWFESAPIKALFGFDGIVGNYASPHTPGTAYVLLHHVF
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHCCCCCCCCCCHHHHHHHHHH
GQSNGVKGAWGHAIGGMGAITQAMAASAREYGVQIRTGCVVERVLVEQGRAVGVVTTGGE
CCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHCCCEEEEEECCCC
TIHARAIVANVNPKLLYQRLMRPGDVPATTRECIAHYRCGSGTFRMNVALSRLPDFTALP
EEEEEEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEEHHHHCCCCCCCC
GDGDHLTAGIIMAPSLDYMDRAWHDARALGWSREPVVELLIPSTLDDTLAPPGQHVASLF
CCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHH
CQHVAPQLPDGGQWDDYRDEVADLMIATVERYAPGFAASVLGRQILSPLDLERIFGLVGG
HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHH
DIFHGALSLNQLFSARPLLGQGAYRGAVPGLYLCGSGTHPGGGVTGAPGHNAARVILGG
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3453116 [H]