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The map label for this gene is yciR [C]

Identifier: 78048416

GI number: 78048416

Start: 3251921

End: 3254287

Strand: Reverse

Name: yciR [C]

Synonym: XCV2860

Alternate gene names: 78048416

Gene position: 3254287-3251921 (Counterclockwise)

Preceding gene: 78048417

Following gene: 78048415

Centisome position: 62.84

GC content: 65.69

Gene sequence:

>2367_bases
ATGAGGTCGATGCGCCTGCATACCCGCATCGCGGCCTTGCTCGTGCTGGTCGTGCTTGCCACGCAGGCGCTGACCTTCCT
TGCCGTGCAGGTGGCGACCGAGCGCAGCGTCAAGGCGCAACTTGGCGAAGAGCTGGAGATCGGGCAGCGGGTCTGGCAAC
GCATCAACGTGCGCCGCGACGAACAGCTGCTGCAGTCGGCGTCGGTGCTGGCCGACGATTTCGGGTTTCGTGCGGCCGTT
GCAAGCGGCGATGTGCCGACCATGCAGTCGGCCTTGCGTAACCACGCCGCGCGCATGTCGGCGCAAACCGCGCTCTTGCT
GTCGCCCGATGGCCAATTCTTGACCGGCCTGGCCGACGTGCCGCAAGCCGAACAATTGCGTGCGGTGCAGGCCTTGCTGC
AGCAAGCGCAGCGCGATGGACGCGCGGTCGGTGTGGTGGCGCTGAATCAGCACATCGTGCGGTTGGCGGTGGTGCAGGTG
CTGGCGCCGAACCGGGTCGGCTGGATTGGGATCGGCAACGAATCCGGCGATGGCCTGGCGCAGGATTTCCGCACCACCAC
CGGGCTGGATGCGACCTTCTTTACCGATGGCCCGCCGGTGCGCGTGCTGGCCTCCACCCTGGAGCCCTCGGCGCGCGCCC
AATTCGCGCAGCAGCTGCCCCTGGCCGAGAAGGTGCAGGCTGCATCGATCCCGCTGACGCTGGATGAGTCGCGTTATCTG
GTCAGGCTGCAATCGATCCAGGGCGACAGCCAGGTGCGGGTGGCCTTGCAGGCATCGCTGGATCGCGCCGTGGCGCCGTA
CCGCATCCTCAAGCTGCGGATCCTGCTGCTGGCAGGCTTGGCCACGGTCGCTGCACTGGGCGTGGCGATTTTTCTTGCGC
GCAGCGTGAGCAAACCGGTGGCGCAACTGGTGCAGGCCGCGCGGCGCATTCAGCGCGGCGACTACCGCACCGCCGTGCAG
GTGCCGCCAGGCCGCGAACTCGCTGAACTGGCCGACAGTTTCGGGCGCATGCAGCACCAGATCGCCAGCCGCGAACAGCA
CATCCTGCATCAGGCCCGCCATGACGCCCTGACTGGGTTGCCTAACCGGATCTGGTTGCTGGAGCGCTTGAAGGACGTGG
TGGATCAGACCGTGGCATCCGGTGGCACCGCCGCGGTGCTGATCCTGGATCTGGAGCGCTTCAAGGAACTCAACGACAGC
CTGGGCCACGACTTCGCCGACCAGGTATTGGTGGAAGCCGGGCGTCGGTTGGTGGAGGTCGTGCAGGAGCCCAACCTGGT
GGGCCGGCTGGGAAGCGATGAATTCATGGTGGTGGTGGCGCAAGCCGATGCGGCCAGCGTGCAGCAGGATGCGCAGCGCC
TGCTGCTGCAGTTGCGCCGCCCGCTGGTGTTGCCGCAGGCGCGCATCCAGCTCGAAGCCAGCATCGGCATCGCCTTGATT
CCCGAGCACGGCGCCGACCCGGACACCTTGTTGCGCCGGGCCGACATTGCACGGCGGCAGGTCGGTACGACGGCCGCCTT
CGGCGCCAGCGTCTACCGCATGGGCCAGGACGAACAGCATTTGCGGCGTTTGCGCCTCACCGGCGATCTGCGTCAGGCCA
TCGGCGCCAATGAACTCACCTTGCGCTTCCAGCCCAAGATTTGTCTGCGCACCGATCATGTCGAACAGGTCGAAGTGCTG
GTGCGCTGGCATCATCCGGTGCTCGGGCCGATCGGCCCGGACGAATTCATCCCGCTTGCCGAACACTCCGGCGTGATCCA
TCCGCTCACCCGCTTCGTGCTGGACCAAGCGCTGCGCTGCCAGGCGCAATGGCGCAAGCAGGGGCTGGAACTGGGCATGG
CCATCAACCTGTCCGCACTGGATCTGTCCGATCCCGGATTGCCCGACTTCGTCCGCGGCTGCCTGGAGCATCATGCCGTG
CCAGCGCAGTCGGTCACACTGGAATTGACCGAAAGTGCCCTGATGCGCGATGTCGAATTCGCGCTGCACATGCTGCATCA
GTTGCGCAGTGTCGGCGTGCGCCTGTCCATCGACGACTTCGGCACCGGCTATTCCTCGTTGGCACAACTCAAGCGCATGC
CGGTGAACGAATTGAAGATCGACAAGAGTTTCGTCATGCAGTTGGCCGAAGGCACCGACGATGCCTTCATCGTGCGCAGC
ACGATCGATCTGGGGCATAACCTAGGGCTGAGCGTGATTGCCGAAGGCGTCGAGAACGCCGCGGCCCTCGCGTTGCTGCG
CGGCTACGGCTGCGACATGGTGCAGGGCTATCTGTATTCGCCACCGCTGGAAGAAGCGCCGCTGGTGGCCTGGTGCATGC
GCCAACTCGGCATCACCACGCCAGCGCATGCAGGAGTGCAGCGATGA

Upstream 100 bases:

>100_bases
TGCAGACCACCGGCGCCGCGCCGGCCGTGGCGCCACCGGATGCGCGCGTGCGCGCCCTGCAGGACAAGTTCCGTAACGCC
GACCCGAAGAAGCCGCGCCC

Downstream 100 bases:

>100_bases
GCGGGCATCTGGGTGTTGCGCTTGTTGCTGCTGCGGTGGCCGGCGTGTTCGCGCCGCTGCATGCCCTGGCCAGCGACGGG
CGCCTGCTCGCCACCGGCGG

Product: putative signalling protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 788; Mature: 788

Protein sequence:

>788_residues
MRSMRLHTRIAALLVLVVLATQALTFLAVQVATERSVKAQLGEELEIGQRVWQRINVRRDEQLLQSASVLADDFGFRAAV
ASGDVPTMQSALRNHAARMSAQTALLLSPDGQFLTGLADVPQAEQLRAVQALLQQAQRDGRAVGVVALNQHIVRLAVVQV
LAPNRVGWIGIGNESGDGLAQDFRTTTGLDATFFTDGPPVRVLASTLEPSARAQFAQQLPLAEKVQAASIPLTLDESRYL
VRLQSIQGDSQVRVALQASLDRAVAPYRILKLRILLLAGLATVAALGVAIFLARSVSKPVAQLVQAARRIQRGDYRTAVQ
VPPGRELAELADSFGRMQHQIASREQHILHQARHDALTGLPNRIWLLERLKDVVDQTVASGGTAAVLILDLERFKELNDS
LGHDFADQVLVEAGRRLVEVVQEPNLVGRLGSDEFMVVVAQADAASVQQDAQRLLLQLRRPLVLPQARIQLEASIGIALI
PEHGADPDTLLRRADIARRQVGTTAAFGASVYRMGQDEQHLRRLRLTGDLRQAIGANELTLRFQPKICLRTDHVEQVEVL
VRWHHPVLGPIGPDEFIPLAEHSGVIHPLTRFVLDQALRCQAQWRKQGLELGMAINLSALDLSDPGLPDFVRGCLEHHAV
PAQSVTLELTESALMRDVEFALHMLHQLRSVGVRLSIDDFGTGYSSLAQLKRMPVNELKIDKSFVMQLAEGTDDAFIVRS
TIDLGHNLGLSVIAEGVENAAALALLRGYGCDMVQGYLYSPPLEEAPLVAWCMRQLGITTPAHAGVQR

Sequences:

>Translated_788_residues
MRSMRLHTRIAALLVLVVLATQALTFLAVQVATERSVKAQLGEELEIGQRVWQRINVRRDEQLLQSASVLADDFGFRAAV
ASGDVPTMQSALRNHAARMSAQTALLLSPDGQFLTGLADVPQAEQLRAVQALLQQAQRDGRAVGVVALNQHIVRLAVVQV
LAPNRVGWIGIGNESGDGLAQDFRTTTGLDATFFTDGPPVRVLASTLEPSARAQFAQQLPLAEKVQAASIPLTLDESRYL
VRLQSIQGDSQVRVALQASLDRAVAPYRILKLRILLLAGLATVAALGVAIFLARSVSKPVAQLVQAARRIQRGDYRTAVQ
VPPGRELAELADSFGRMQHQIASREQHILHQARHDALTGLPNRIWLLERLKDVVDQTVASGGTAAVLILDLERFKELNDS
LGHDFADQVLVEAGRRLVEVVQEPNLVGRLGSDEFMVVVAQADAASVQQDAQRLLLQLRRPLVLPQARIQLEASIGIALI
PEHGADPDTLLRRADIARRQVGTTAAFGASVYRMGQDEQHLRRLRLTGDLRQAIGANELTLRFQPKICLRTDHVEQVEVL
VRWHHPVLGPIGPDEFIPLAEHSGVIHPLTRFVLDQALRCQAQWRKQGLELGMAINLSALDLSDPGLPDFVRGCLEHHAV
PAQSVTLELTESALMRDVEFALHMLHQLRSVGVRLSIDDFGTGYSSLAQLKRMPVNELKIDKSFVMQLAEGTDDAFIVRS
TIDLGHNLGLSVIAEGVENAAALALLRGYGCDMVQGYLYSPPLEEAPLVAWCMRQLGITTPAHAGVQR
>Mature_788_residues
MRSMRLHTRIAALLVLVVLATQALTFLAVQVATERSVKAQLGEELEIGQRVWQRINVRRDEQLLQSASVLADDFGFRAAV
ASGDVPTMQSALRNHAARMSAQTALLLSPDGQFLTGLADVPQAEQLRAVQALLQQAQRDGRAVGVVALNQHIVRLAVVQV
LAPNRVGWIGIGNESGDGLAQDFRTTTGLDATFFTDGPPVRVLASTLEPSARAQFAQQLPLAEKVQAASIPLTLDESRYL
VRLQSIQGDSQVRVALQASLDRAVAPYRILKLRILLLAGLATVAALGVAIFLARSVSKPVAQLVQAARRIQRGDYRTAVQ
VPPGRELAELADSFGRMQHQIASREQHILHQARHDALTGLPNRIWLLERLKDVVDQTVASGGTAAVLILDLERFKELNDS
LGHDFADQVLVEAGRRLVEVVQEPNLVGRLGSDEFMVVVAQADAASVQQDAQRLLLQLRRPLVLPQARIQLEASIGIALI
PEHGADPDTLLRRADIARRQVGTTAAFGASVYRMGQDEQHLRRLRLTGDLRQAIGANELTLRFQPKICLRTDHVEQVEVL
VRWHHPVLGPIGPDEFIPLAEHSGVIHPLTRFVLDQALRCQAQWRKQGLELGMAINLSALDLSDPGLPDFVRGCLEHHAV
PAQSVTLELTESALMRDVEFALHMLHQLRSVGVRLSIDDFGTGYSSLAQLKRMPVNELKIDKSFVMQLAEGTDDAFIVRS
TIDLGHNLGLSVIAEGVENAAALALLRGYGCDMVQGYLYSPPLEEAPLVAWCMRQLGITTPAHAGVQR

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=427, Percent_Identity=34.6604215456674, Blast_Score=265, Evalue=7e-72,
Organism=Escherichia coli, GI87081921, Length=427, Percent_Identity=33.7236533957845, Blast_Score=244, Evalue=2e-65,
Organism=Escherichia coli, GI226510982, Length=447, Percent_Identity=28.6353467561521, Blast_Score=144, Evalue=3e-35,
Organism=Escherichia coli, GI1790496, Length=247, Percent_Identity=35.6275303643725, Blast_Score=144, Evalue=3e-35,
Organism=Escherichia coli, GI87081743, Length=247, Percent_Identity=31.1740890688259, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI1786507, Length=298, Percent_Identity=31.5436241610738, Blast_Score=133, Evalue=6e-32,
Organism=Escherichia coli, GI87081980, Length=256, Percent_Identity=32.421875, Blast_Score=130, Evalue=4e-31,
Organism=Escherichia coli, GI87081845, Length=246, Percent_Identity=34.9593495934959, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1788502, Length=257, Percent_Identity=32.295719844358, Blast_Score=122, Evalue=8e-29,
Organism=Escherichia coli, GI1787055, Length=251, Percent_Identity=33.0677290836653, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI1788849, Length=240, Percent_Identity=32.0833333333333, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI87082096, Length=247, Percent_Identity=32.7935222672065, Blast_Score=106, Evalue=6e-24,
Organism=Escherichia coli, GI87081977, Length=154, Percent_Identity=33.1168831168831, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI1788381, Length=412, Percent_Identity=23.7864077669903, Blast_Score=80, Evalue=7e-16,
Organism=Escherichia coli, GI1788956, Length=242, Percent_Identity=28.5123966942149, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1786584, Length=171, Percent_Identity=29.2397660818713, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI145693134, Length=158, Percent_Identity=31.6455696202532, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI87082007, Length=136, Percent_Identity=30.8823529411765, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1787410, Length=171, Percent_Identity=28.0701754385965, Blast_Score=64, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 86185; Mature: 86185

Theoretical pI: Translated: 6.99; Mature: 6.99

Prosite motif: PS50885 HAMP ; PS50883 EAL ; PS50887 GGDEF ; PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSMRLHTRIAALLVLVVLATQALTFLAVQVATERSVKAQLGEELEIGQRVWQRINVRRD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHH
EQLLQSASVLADDFGFRAAVASGDVPTMQSALRNHAARMSAQTALLLSPDGQFLTGLADV
HHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHCC
PQAEQLRAVQALLQQAQRDGRAVGVVALNQHIVRLAVVQVLAPNRVGWIGIGNESGDGLA
CCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH
QDFRTTTGLDATFFTDGPPVRVLASTLEPSARAQFAQQLPLAEKVQAASIPLTLDESRYL
HHHHHHCCCCEEEECCCCCHHHHHHHCCHHHHHHHHHHCCHHHHHHHCCCCEEECCCCEE
VRLQSIQGDSQVRVALQASLDRAVAPYRILKLRILLLAGLATVAALGVAIFLARSVSKPV
EEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQLVQAARRIQRGDYRTAVQVPPGRELAELADSFGRMQHQIASREQHILHQARHDALTGL
HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PNRIWLLERLKDVVDQTVASGGTAAVLILDLERFKELNDSLGHDFADQVLVEAGRRLVEV
CHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
VQEPNLVGRLGSDEFMVVVAQADAASVQQDAQRLLLQLRRPLVLPQARIQLEASIGIALI
HHCCCCEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCHHEEEEECCCEEEE
PEHGADPDTLLRRADIARRQVGTTAAFGASVYRMGQDEQHLRRLRLTGDLRQAIGANELT
CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEE
LRFQPKICLRTDHVEQVEVLVRWHHPVLGPIGPDEFIPLAEHSGVIHPLTRFVLDQALRC
EEECCCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHH
QAQWRKQGLELGMAINLSALDLSDPGLPDFVRGCLEHHAVPAQSVTLELTESALMRDVEF
HHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCHHEEHHHHHHHHHHHHHH
ALHMLHQLRSVGVRLSIDDFGTGYSSLAQLKRMPVNELKIDKSFVMQLAEGTDDAFIVRS
HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCHHHHHCCHHHHHHHHCCCCCEEEEEE
TIDLGHNLGLSVIAEGVENAAALALLRGYGCDMVQGYLYSPPLEEAPLVAWCMRQLGITT
HHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHHHHHHCCCC
PAHAGVQR
CCCCCCCC
>Mature Secondary Structure
MRSMRLHTRIAALLVLVVLATQALTFLAVQVATERSVKAQLGEELEIGQRVWQRINVRRD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHH
EQLLQSASVLADDFGFRAAVASGDVPTMQSALRNHAARMSAQTALLLSPDGQFLTGLADV
HHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHCC
PQAEQLRAVQALLQQAQRDGRAVGVVALNQHIVRLAVVQVLAPNRVGWIGIGNESGDGLA
CCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH
QDFRTTTGLDATFFTDGPPVRVLASTLEPSARAQFAQQLPLAEKVQAASIPLTLDESRYL
HHHHHHCCCCEEEECCCCCHHHHHHHCCHHHHHHHHHHCCHHHHHHHCCCCEEECCCCEE
VRLQSIQGDSQVRVALQASLDRAVAPYRILKLRILLLAGLATVAALGVAIFLARSVSKPV
EEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQLVQAARRIQRGDYRTAVQVPPGRELAELADSFGRMQHQIASREQHILHQARHDALTGL
HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PNRIWLLERLKDVVDQTVASGGTAAVLILDLERFKELNDSLGHDFADQVLVEAGRRLVEV
CHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
VQEPNLVGRLGSDEFMVVVAQADAASVQQDAQRLLLQLRRPLVLPQARIQLEASIGIALI
HHCCCCEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCHHEEEEECCCEEEE
PEHGADPDTLLRRADIARRQVGTTAAFGASVYRMGQDEQHLRRLRLTGDLRQAIGANELT
CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEE
LRFQPKICLRTDHVEQVEVLVRWHHPVLGPIGPDEFIPLAEHSGVIHPLTRFVLDQALRC
EEECCCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHH
QAQWRKQGLELGMAINLSALDLSDPGLPDFVRGCLEHHAVPAQSVTLELTESALMRDVEF
HHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCHHEEHHHHHHHHHHHHHH
ALHMLHQLRSVGVRLSIDDFGTGYSSLAQLKRMPVNELKIDKSFVMQLAEGTDDAFIVRS
HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCHHHHHCCHHHHHHHHCCCCCEEEEEE
TIDLGHNLGLSVIAEGVENAAALALLRGYGCDMVQGYLYSPPLEEAPLVAWCMRQLGITT
HHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHHHHHHCCCC
PAHAGVQR
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]