| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is nuoL [H]
Identifier: 78048398
GI number: 78048398
Start: 3234863
End: 3237022
Strand: Reverse
Name: nuoL [H]
Synonym: XCV2842
Alternate gene names: 78048398
Gene position: 3237022-3234863 (Counterclockwise)
Preceding gene: 78048399
Following gene: 78048397
Centisome position: 62.51
GC content: 59.58
Gene sequence:
>2160_bases ATGGAAATCACTCTCTCCAAGAGTCTGTTGATCGCAGTGGTGCTTGCACCGCTGGTCGGCAGCATCATCGCCGGCCTGTT CGGGCGTCAGGTCGGGCGCAAGGGCGCGCAGTACGTCACCATCCTCGGTGTTGCGGTCAGCTGCGTGCTGTCGTGCCTGA CGCTGTATCAGCTGGTGGAGCAGGGCGCCAGCCCGTTCAACCAGAACCTCTACACATTCTTTGATGTCGGCAACTACTCG GCACATGTCGGCTTCATGGTCGACCGCCTGACTGCGATGATGATGGTGGTGGTGACCTTCGTGTCGCTGTTGGTGCACAT CTACACCATTGGCTACATGGAAGAGGACCCGGGTTACCAGCGCTTCTTCAGCTACATCTCGTTGTTCACCTTCTCCATGC TCACGCTGGTGATGAGCAACAACTTCCTGCAGCTGTTCTTCGGCTGGGAAGCGGTGGGCCTGGTGTCGTACCTGCTGATC GGTTTCTGGTTCAAGCGCCCGACCGCTGTGTTCGCCAACATGAAGGCGTTCCTGGTCAACCGCGTCGGCGACTTTGGCTT CATCTTCGGTATCGCCGGCGTCCTGTTGTGGTTCGGCTCGTTGGATTACTCCACCGTGTTCGCCAACGCGACCACCATGG CCGGTGCCAAGGTGCAGCTGTTCGCGGGCCACGAATGGAGCGTGATGACGCTGATCTGCATCTGCCTGTTCATCGGTGCG ATGGGCAAGTCGGCCCAGGTGCCGTTGCACGTGTGGCTGCCGGACTCGATGGAAGGCCCCACACCGATCTCGGCGCTGAT CCACGCCGCAACGATGGTGACCGCCGGCATCTTCATGGTGGCGCGTATGTCGCCGCTGTTCGAGCTGTCGGAAACAGCGC TGAACTTCATCCTGTTCATCGGTGCGACCACGGCCTTCTTCACCGGCCTGATCGGTATCGTGCAGAACGACATCAAGCGC GTGGTGGCGTATTCCACGCTGTCGCAGCTGGGTTACATGACCGTGGCATTGGGCGTGTCGGCCTATTCGGCAGCCGTGTT CCACCTGATGACCCACGCCTTCTTCAAGGCGCTGCTGTTCCTGGCGGCCGGCTCGGTGATCATCGGCATGCACCACGAGC AGGACATGCGCAAGATGGGTGGCCTGCGCAAGTACATGAAGGTGACCTACTGGACCAGCGTGATCGGTACATTGGCCTTG GTTGGTACGCCGTTCTTCTCCGGCTTCTACTCGAAGGACACCATTATCGAGGCGGCCGCGCATCATGCGCATGAGTCGCA TGGCTGGATTGCAACCTATGGCTACTGGGCTGTGCTTGGCGGCGTATTGGTGACCAGTTTCTACAGCTTCCGTCTGCTGT TCCTGACCTTCCACGGCAAGGAGCGGTTCCGCGACGCCCATGCGCACGACGCGCATTCGCATCACGACAGCGCGCATACC GATGCCGAAGCGCAGGTTCACTCGCACGATGCGCATGCCCACGACACGCATGGCCACGACGATCACGGACATGGTCACCA CGGTGCCCACGAGCCGCATGAATCCAAGTGGGTGGTAACGCTGCCGTTGGTCTTGTTAGCAATCCCCTCGATCGCAATCG GCTTCTTCACGATCGGTCCGATGTTGTTCGGGACCGACTGGCAGGGCCACCATGCAGCACACGCTATGCAGGGCCAGGCA GTTTCGTTCTTCACTGGCATCGTCGATTTCTACGATCCGGCACGCGATACCGTTGGTGCATTGGCCGAAGAGTTCCACGG CCCGGTTGCATTCGCACTGCACGGCATGATGGCCGCTCCGTTCTTCCTGACGGTTGCCGGCCTGTTGTTGGCGGCACTGT TCTATCTCTGGAAGCCTGAGTGGGCAGCTAGCTCACGTAAGAAGCTGTCGTGGCTGGTGTGGATACTTGAGAATAAGTAC GGCGCCGACAAGCTCTGGATCAATGGCTTCGCCGGTGGTGGCGTTGTGCTTGGCAAGGCGTCACGTGCAGTCGATACCCA TGTGGTCGACGGCGCTGTCGTCAACGGTTCTGCCCGACTGATCGACCTGGCTGCAAATCTGCTGCGTCGCACGCAATCCG GTTTCCTCTATCACTACGCCTTCGCAATGATCATCGGTTTGATCGCCTTGTTGGCGGTACTGATGCATTTCTGGCGTTGA
Upstream 100 bases:
>100_bases GCGGAGGCTGCAATCGGCCTTGCGATCTTGGTGACTCTGTTCCGCACGCGCCGCACGATTAATGTGGCCGAAGTCGATAC GTTGAAGGGCTGACCTGTAG
Downstream 100 bases:
>100_bases CCTGTACGGAATAAGAAAACGTGTCGAACTGGCCTTTACTGTCTATCTTGATCTGGCTGCCGATTATCGGTGGCGCCCTG ATCCTTGCGTTGCGCAACGC
Product: NADH dehydrogenase subunit L
Products: NA
Alternate protein names: NADH dehydrogenase I subunit L; NDH-1 subunit L [H]
Number of amino acids: Translated: 719; Mature: 719
Protein sequence:
>719_residues MEITLSKSLLIAVVLAPLVGSIIAGLFGRQVGRKGAQYVTILGVAVSCVLSCLTLYQLVEQGASPFNQNLYTFFDVGNYS AHVGFMVDRLTAMMMVVVTFVSLLVHIYTIGYMEEDPGYQRFFSYISLFTFSMLTLVMSNNFLQLFFGWEAVGLVSYLLI GFWFKRPTAVFANMKAFLVNRVGDFGFIFGIAGVLLWFGSLDYSTVFANATTMAGAKVQLFAGHEWSVMTLICICLFIGA MGKSAQVPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVARMSPLFELSETALNFILFIGATTAFFTGLIGIVQNDIKR VVAYSTLSQLGYMTVALGVSAYSAAVFHLMTHAFFKALLFLAAGSVIIGMHHEQDMRKMGGLRKYMKVTYWTSVIGTLAL VGTPFFSGFYSKDTIIEAAAHHAHESHGWIATYGYWAVLGGVLVTSFYSFRLLFLTFHGKERFRDAHAHDAHSHHDSAHT DAEAQVHSHDAHAHDTHGHDDHGHGHHGAHEPHESKWVVTLPLVLLAIPSIAIGFFTIGPMLFGTDWQGHHAAHAMQGQA VSFFTGIVDFYDPARDTVGALAEEFHGPVAFALHGMMAAPFFLTVAGLLLAALFYLWKPEWAASSRKKLSWLVWILENKY GADKLWINGFAGGGVVLGKASRAVDTHVVDGAVVNGSARLIDLAANLLRRTQSGFLYHYAFAMIIGLIALLAVLMHFWR
Sequences:
>Translated_719_residues MEITLSKSLLIAVVLAPLVGSIIAGLFGRQVGRKGAQYVTILGVAVSCVLSCLTLYQLVEQGASPFNQNLYTFFDVGNYS AHVGFMVDRLTAMMMVVVTFVSLLVHIYTIGYMEEDPGYQRFFSYISLFTFSMLTLVMSNNFLQLFFGWEAVGLVSYLLI GFWFKRPTAVFANMKAFLVNRVGDFGFIFGIAGVLLWFGSLDYSTVFANATTMAGAKVQLFAGHEWSVMTLICICLFIGA MGKSAQVPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVARMSPLFELSETALNFILFIGATTAFFTGLIGIVQNDIKR VVAYSTLSQLGYMTVALGVSAYSAAVFHLMTHAFFKALLFLAAGSVIIGMHHEQDMRKMGGLRKYMKVTYWTSVIGTLAL VGTPFFSGFYSKDTIIEAAAHHAHESHGWIATYGYWAVLGGVLVTSFYSFRLLFLTFHGKERFRDAHAHDAHSHHDSAHT DAEAQVHSHDAHAHDTHGHDDHGHGHHGAHEPHESKWVVTLPLVLLAIPSIAIGFFTIGPMLFGTDWQGHHAAHAMQGQA VSFFTGIVDFYDPARDTVGALAEEFHGPVAFALHGMMAAPFFLTVAGLLLAALFYLWKPEWAASSRKKLSWLVWILENKY GADKLWINGFAGGGVVLGKASRAVDTHVVDGAVVNGSARLIDLAANLLRRTQSGFLYHYAFAMIIGLIALLAVLMHFWR >Mature_719_residues MEITLSKSLLIAVVLAPLVGSIIAGLFGRQVGRKGAQYVTILGVAVSCVLSCLTLYQLVEQGASPFNQNLYTFFDVGNYS AHVGFMVDRLTAMMMVVVTFVSLLVHIYTIGYMEEDPGYQRFFSYISLFTFSMLTLVMSNNFLQLFFGWEAVGLVSYLLI GFWFKRPTAVFANMKAFLVNRVGDFGFIFGIAGVLLWFGSLDYSTVFANATTMAGAKVQLFAGHEWSVMTLICICLFIGA MGKSAQVPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVARMSPLFELSETALNFILFIGATTAFFTGLIGIVQNDIKR VVAYSTLSQLGYMTVALGVSAYSAAVFHLMTHAFFKALLFLAAGSVIIGMHHEQDMRKMGGLRKYMKVTYWTSVIGTLAL VGTPFFSGFYSKDTIIEAAAHHAHESHGWIATYGYWAVLGGVLVTSFYSFRLLFLTFHGKERFRDAHAHDAHSHHDSAHT DAEAQVHSHDAHAHDTHGHDDHGHGHHGAHEPHESKWVVTLPLVLLAIPSIAIGFFTIGPMLFGTDWQGHHAAHAMQGQA VSFFTGIVDFYDPARDTVGALAEEFHGPVAFALHGMMAAPFFLTVAGLLLAALFYLWKPEWAASSRKKLSWLVWILENKY GADKLWINGFAGGGVVLGKASRAVDTHVVDGAVVNGSARLIDLAANLLRRTQSGFLYHYAFAMIIGLIALLAVLMHFWR
Specific function: NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocat
COG id: COG1009
COG function: function code CP; NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the complex I subunit 5 family [H]
Homologues:
Organism=Homo sapiens, GI251831117, Length=381, Percent_Identity=42.257217847769, Blast_Score=287, Evalue=2e-77, Organism=Escherichia coli, GI1788614, Length=478, Percent_Identity=42.0502092050209, Blast_Score=341, Evalue=1e-94, Organism=Escherichia coli, GI1788829, Length=444, Percent_Identity=29.7297297297297, Blast_Score=154, Evalue=1e-38, Organism=Escherichia coli, GI1788831, Length=374, Percent_Identity=28.3422459893048, Blast_Score=122, Evalue=1e-28, Organism=Escherichia coli, GI1788827, Length=428, Percent_Identity=28.5046728971963, Blast_Score=114, Evalue=2e-26, Organism=Escherichia coli, GI1788613, Length=473, Percent_Identity=24.5243128964059, Blast_Score=90, Evalue=5e-19, Organism=Escherichia coli, GI2367154, Length=136, Percent_Identity=32.3529411764706, Blast_Score=74, Evalue=4e-14, Organism=Escherichia coli, GI145693160, Length=382, Percent_Identity=24.6073298429319, Blast_Score=66, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001750 - InterPro: IPR001516 - InterPro: IPR002128 - InterPro: IPR003945 - InterPro: IPR018393 [H]
Pfam domain/function: PF00361 Oxidored_q1; PF01010 Oxidored_q1_C; PF00662 Oxidored_q1_N [H]
EC number: =1.6.99.5 [H]
Molecular weight: Translated: 78901; Mature: 78901
Theoretical pI: Translated: 7.31; Mature: 7.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEITLSKSLLIAVVLAPLVGSIIAGLFGRQVGRKGAQYVTILGVAVSCVLSCLTLYQLVE CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH QGASPFNQNLYTFFDVGNYSAHVGFMVDRLTAMMMVVVTFVSLLVHIYTIGYMEEDPGYQ HCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH RFFSYISLFTFSMLTLVMSNNFLQLFFGWEAVGLVSYLLIGFWFKRPTAVFANMKAFLVN HHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH RVGDFGFIFGIAGVLLWFGSLDYSTVFANATTMAGAKVQLFAGHEWSVMTLICICLFIGA HCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCEECCCEEEEEECCCHHHHHHHHHHHHHHC MGKSAQVPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVARMSPLFELSETALNFILFI CCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH GATTAFFTGLIGIVQNDIKRVVAYSTLSQLGYMTVALGVSAYSAAVFHLMTHAFFKALLF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAAGSVIIGMHHEQDMRKMGGLRKYMKVTYWTSVIGTLALVGTPFFSGFYSKDTIIEAAA HHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCHHHHHHHH HHAHESHGWIATYGYWAVLGGVLVTSFYSFRLLFLTFHGKERFRDAHAHDAHSHHDSAHT HHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHCCCCCCCCCCCCCC DAEAQVHSHDAHAHDTHGHDDHGHGHHGAHEPHESKWVVTLPLVLLAIPSIAIGFFTIGP CCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHH MLFGTDWQGHHAAHAMQGQAVSFFTGIVDFYDPARDTVGALAEEFHGPVAFALHGMMAAP HHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHH FFLTVAGLLLAALFYLWKPEWAASSRKKLSWLVWILENKYGADKLWINGFAGGGVVLGKA HHHHHHHHHHHHHHHHHCCCHHCCCHHHHEEEEEEEECCCCCCEEEEEEECCCCEEEECC SRAVDTHVVDGAVVNGSARLIDLAANLLRRTQSGFLYHYAFAMIIGLIALLAVLMHFWR CHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MEITLSKSLLIAVVLAPLVGSIIAGLFGRQVGRKGAQYVTILGVAVSCVLSCLTLYQLVE CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH QGASPFNQNLYTFFDVGNYSAHVGFMVDRLTAMMMVVVTFVSLLVHIYTIGYMEEDPGYQ HCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH RFFSYISLFTFSMLTLVMSNNFLQLFFGWEAVGLVSYLLIGFWFKRPTAVFANMKAFLVN HHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH RVGDFGFIFGIAGVLLWFGSLDYSTVFANATTMAGAKVQLFAGHEWSVMTLICICLFIGA HCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCEECCCEEEEEECCCHHHHHHHHHHHHHHC MGKSAQVPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVARMSPLFELSETALNFILFI CCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH GATTAFFTGLIGIVQNDIKRVVAYSTLSQLGYMTVALGVSAYSAAVFHLMTHAFFKALLF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAAGSVIIGMHHEQDMRKMGGLRKYMKVTYWTSVIGTLALVGTPFFSGFYSKDTIIEAAA HHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCHHHHHHHH HHAHESHGWIATYGYWAVLGGVLVTSFYSFRLLFLTFHGKERFRDAHAHDAHSHHDSAHT HHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHCCCCCCCCCCCCCC DAEAQVHSHDAHAHDTHGHDDHGHGHHGAHEPHESKWVVTLPLVLLAIPSIAIGFFTIGP CCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHH MLFGTDWQGHHAAHAMQGQAVSFFTGIVDFYDPARDTVGALAEEFHGPVAFALHGMMAAP HHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHH FFLTVAGLLLAALFYLWKPEWAASSRKKLSWLVWILENKYGADKLWINGFAGGGVVLGKA HHHHHHHHHHHHHHHHHCCCHHCCCHHHHEEEEEEEECCCCCCEEEEEEECCCCEEEECC SRAVDTHVVDGAVVNGSARLIDLAANLLRRTQSGFLYHYAFAMIIGLIALLAVLMHFWR CHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10761919 [H]