Click here to switch to the map view.

The map label for this gene is virD4 [H]

Identifier: 78048366

GI number: 78048366

Start: 3196116

End: 3197789

Strand: Reverse

Name: virD4 [H]

Synonym: XCV2810

Alternate gene names: 78048366

Gene position: 3197789-3196116 (Counterclockwise)

Preceding gene: 78048367

Following gene: 78048365

Centisome position: 61.75

GC content: 59.68

Gene sequence:

>1674_bases
ATGTCCAAACCCAAAATCATCGCAATTGCCACGCTGGTGGCGGTGCTAGTCGGATACTGCCTGTCTGGCTATCTCACCCT
GCTGTTGCTGCGGCTCGACACCGGTCTGTACGGGTGGGACACCTACTACCGCTATTTCAGCGCGCTTGGGTTGCCCCAAG
TGGCGCCTTACGCGACCAAGATCAAGATTGCGGGCGCGCTTGGATTTGGCCTGCCGGTGCTGGTCTGGGCGATTGCCGTT
GTGCTCATCGTCAAGCCCAAGGCGCGCGCCCTGCACGGTGACGCGCGCTTCGCTGGCGCCGCCGACCTCTCCAAGCATGG
GCTGTTCAAGCCCGCCGGAAACGGCATTGTCGTCGGCAAGTTCAATGGCAAGCTGGTGCGACTGAGCGGCCAGCAATTCG
TGATTCTTGCTGCGCCGACGCGCTCGGGCAAGGGTGTCGGTGTCGTGATCCCGAACCTTTTGGAGTATCAAGAGTCGATC
GTCGTCCTGGACATCAAGCAGGAGAACTTCGACCTGACCAGCGGGTGGCGCGCCAGTCAGGGCCACGAAGTCTTCCTGTT
CAACCCGTTCGCCGAAGACCGTCGCACGCATCGCTGGAACCCGTTGACCTATGTGTCGAACGACCCCGCATTCCGCGTTT
CGGATCTGATGAGCATCGCGGCGATGCTGTACCCGGACGGCTCCGACGACCAGAAGTTCTGGGTCAGCCAGGCGCGCAAC
GCGTTCATGGCATTCGCGCTGTACCTGTTCGAGAACTGGGACGAGGAGCTGTCGCTCGGTTTCCCGGGTGGGGCAGGGGC
GCCCACGCTGGGCGGGATTTATCGCCTGTCCTCGGGCGACGGTACCGATCTCAAGAAATATCTGAAGTCGCTGTCCGAGC
GGCGGTTCCTCAGCAGCAACGCCAAGTCGGCCTTTGCCAACCTGCTGTCCCAGGCGGATGAGACCTTCGCCTCGATCATG
GGCACCTTGAAGGAGCCGCTCAATGCATGGATCAATCCGGTGCTGGACGCCGCCACCAGTGCGGATGACTTCCTGCTCAC
GGACCTTCGCAAGAAGAAGATGACCATCTACATCGGCATCCAGCCCAACAAGCTGGCCGAAAGCCGCCTGATCATCAATC
TGCTCTTCAGCCAGATCATCAACCTCAATACCCGCGAACTGCCCAAGTCCAACCCTGAGCTCAAATATCAGTGCCTGTTG
CTGATGGACGAATTCACCTCGATCGGCAAGGTGGACATCATCGCGACCGCGGTAGCCTACATGGCCGGCTACAACATCCG
CCTGCTGCCCATCATCCAGAGCATGGCGCAGTTGGACGCAACCTACGGCAAAGATCTGTCACGCACCATCATCACCAACC
ACGCCCTGCAGATCCTCTACGCGCCGCGCGAACAGCAGGACGCCAACGACTACTCCGAGATGCTGGGTTACACCACCATC
AAGAAGAAGAACGTCACCCGAGGGCGGGAGACCACCCATAGCGTGTCAGAAGAGCGGCGGGCTCTGATGTTGCCCCAGGA
GCTCAAGGCCATGGGCAACGAGAAGGAAGTGTTCCTGTACGAGGGGATCCCGCATCCGGTGAAGTGCGACAAGATTCGCT
ACTACGAGGATCGCTACTTCACTGCGCGCTTACTGCCAAAAACTGAAGTGAAAACGCTTACCATCAAAGTGTGA

Upstream 100 bases:

>100_bases
GGAGAGCGAGAGCGGCGGACGCAAGTCCGAGCTTGTCGACCATAAGCCGGTCGTGCGTCGCTAGCCCGCCATCGTGATGC
AAGCCTAAGGAGAAGGGCGC

Downstream 100 bases:

>100_bases
TTGATGTCACATTTGCAGTGCGGTGCCTGGTGCGCAATTCTTGACGGATCTGCTTGTTAAGGGCAAAGTTAGCAAGAATC
TGCGGTGTAGATAGATGGTC

Product: type IV secretion system protein VirD4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 557; Mature: 556

Protein sequence:

>557_residues
MSKPKIIAIATLVAVLVGYCLSGYLTLLLLRLDTGLYGWDTYYRYFSALGLPQVAPYATKIKIAGALGFGLPVLVWAIAV
VLIVKPKARALHGDARFAGAADLSKHGLFKPAGNGIVVGKFNGKLVRLSGQQFVILAAPTRSGKGVGVVIPNLLEYQESI
VVLDIKQENFDLTSGWRASQGHEVFLFNPFAEDRRTHRWNPLTYVSNDPAFRVSDLMSIAAMLYPDGSDDQKFWVSQARN
AFMAFALYLFENWDEELSLGFPGGAGAPTLGGIYRLSSGDGTDLKKYLKSLSERRFLSSNAKSAFANLLSQADETFASIM
GTLKEPLNAWINPVLDAATSADDFLLTDLRKKKMTIYIGIQPNKLAESRLIINLLFSQIINLNTRELPKSNPELKYQCLL
LMDEFTSIGKVDIIATAVAYMAGYNIRLLPIIQSMAQLDATYGKDLSRTIITNHALQILYAPREQQDANDYSEMLGYTTI
KKKNVTRGRETTHSVSEERRALMLPQELKAMGNEKEVFLYEGIPHPVKCDKIRYYEDRYFTARLLPKTEVKTLTIKV

Sequences:

>Translated_557_residues
MSKPKIIAIATLVAVLVGYCLSGYLTLLLLRLDTGLYGWDTYYRYFSALGLPQVAPYATKIKIAGALGFGLPVLVWAIAV
VLIVKPKARALHGDARFAGAADLSKHGLFKPAGNGIVVGKFNGKLVRLSGQQFVILAAPTRSGKGVGVVIPNLLEYQESI
VVLDIKQENFDLTSGWRASQGHEVFLFNPFAEDRRTHRWNPLTYVSNDPAFRVSDLMSIAAMLYPDGSDDQKFWVSQARN
AFMAFALYLFENWDEELSLGFPGGAGAPTLGGIYRLSSGDGTDLKKYLKSLSERRFLSSNAKSAFANLLSQADETFASIM
GTLKEPLNAWINPVLDAATSADDFLLTDLRKKKMTIYIGIQPNKLAESRLIINLLFSQIINLNTRELPKSNPELKYQCLL
LMDEFTSIGKVDIIATAVAYMAGYNIRLLPIIQSMAQLDATYGKDLSRTIITNHALQILYAPREQQDANDYSEMLGYTTI
KKKNVTRGRETTHSVSEERRALMLPQELKAMGNEKEVFLYEGIPHPVKCDKIRYYEDRYFTARLLPKTEVKTLTIKV
>Mature_556_residues
SKPKIIAIATLVAVLVGYCLSGYLTLLLLRLDTGLYGWDTYYRYFSALGLPQVAPYATKIKIAGALGFGLPVLVWAIAVV
LIVKPKARALHGDARFAGAADLSKHGLFKPAGNGIVVGKFNGKLVRLSGQQFVILAAPTRSGKGVGVVIPNLLEYQESIV
VLDIKQENFDLTSGWRASQGHEVFLFNPFAEDRRTHRWNPLTYVSNDPAFRVSDLMSIAAMLYPDGSDDQKFWVSQARNA
FMAFALYLFENWDEELSLGFPGGAGAPTLGGIYRLSSGDGTDLKKYLKSLSERRFLSSNAKSAFANLLSQADETFASIMG
TLKEPLNAWINPVLDAATSADDFLLTDLRKKKMTIYIGIQPNKLAESRLIINLLFSQIINLNTRELPKSNPELKYQCLLL
MDEFTSIGKVDIIATAVAYMAGYNIRLLPIIQSMAQLDATYGKDLSRTIITNHALQILYAPREQQDANDYSEMLGYTTIK
KKNVTRGRETTHSVSEERRALMLPQELKAMGNEKEVFLYEGIPHPVKCDKIRYYEDRYFTARLLPKTEVKTLTIKV

Specific function: Unknown

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virD4/traG family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003688 [H]

Pfam domain/function: PF02534 TraG [H]

EC number: NA

Molecular weight: Translated: 62014; Mature: 61882

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: PS00178 AA_TRNA_LIGASE_I ; PS00678 WD_REPEATS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKPKIIAIATLVAVLVGYCLSGYLTLLLLRLDTGLYGWDTYYRYFSALGLPQVAPYATK
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEE
IKIAGALGFGLPVLVWAIAVVLIVKPKARALHGDARFAGAADLSKHGLFKPAGNGIVVGK
EEEEEEHHCCHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCHHHCCCCCCCCCEEEEEE
FNGKLVRLSGQQFVILAAPTRSGKGVGVVIPNLLEYQESIVVLDIKQENFDLTSGWRASQ
CCCEEEEECCCEEEEEEECCCCCCEEEEECCHHHCCCCCEEEEEEECCCCCCCCCCCCCC
GHEVFLFNPFAEDRRTHRWNPLTYVSNDPAFRVSDLMSIAAMLYPDGSDDQKFWVSQARN
CCEEEEECCCHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
AFMAFALYLFENWDEELSLGFPGGAGAPTLGGIYRLSSGDGTDLKKYLKSLSERRFLSSN
HHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCC
AKSAFANLLSQADETFASIMGTLKEPLNAWINPVLDAATSADDFLLTDLRKKKMTIYIGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEEEEE
QPNKLAESRLIINLLFSQIINLNTRELPKSNPELKYQCLLLMDEFTSIGKVDIIATAVAY
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEHHHCCCCCHHHHHHHHHH
MAGYNIRLLPIIQSMAQLDATYGKDLSRTIITNHALQILYAPREQQDANDYSEMLGYTTI
HHCCCEEEHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCHHE
KKKNVTRGRETTHSVSEERRALMLPQELKAMGNEKEVFLYEGIPHPVKCDKIRYYEDRYF
ECCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEECCCCCCCCCCCEEEECCCEE
TARLLPKTEVKTLTIKV
EEEECCCCCEEEEEEEC
>Mature Secondary Structure 
SKPKIIAIATLVAVLVGYCLSGYLTLLLLRLDTGLYGWDTYYRYFSALGLPQVAPYATK
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEE
IKIAGALGFGLPVLVWAIAVVLIVKPKARALHGDARFAGAADLSKHGLFKPAGNGIVVGK
EEEEEEHHCCHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCHHHCCCCCCCCCEEEEEE
FNGKLVRLSGQQFVILAAPTRSGKGVGVVIPNLLEYQESIVVLDIKQENFDLTSGWRASQ
CCCEEEEECCCEEEEEEECCCCCCEEEEECCHHHCCCCCEEEEEEECCCCCCCCCCCCCC
GHEVFLFNPFAEDRRTHRWNPLTYVSNDPAFRVSDLMSIAAMLYPDGSDDQKFWVSQARN
CCEEEEECCCHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
AFMAFALYLFENWDEELSLGFPGGAGAPTLGGIYRLSSGDGTDLKKYLKSLSERRFLSSN
HHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCC
AKSAFANLLSQADETFASIMGTLKEPLNAWINPVLDAATSADDFLLTDLRKKKMTIYIGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEEEEE
QPNKLAESRLIINLLFSQIINLNTRELPKSNPELKYQCLLLMDEFTSIGKVDIIATAVAY
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEHHHCCCCCHHHHHHHHHH
MAGYNIRLLPIIQSMAQLDATYGKDLSRTIITNHALQILYAPREQQDANDYSEMLGYTTI
HHCCCEEEHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCHHE
KKKNVTRGRETTHSVSEERRALMLPQELKAMGNEKEVFLYEGIPHPVKCDKIRYYEDRYF
ECCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEECCCCCCCCCCCEEEECCCEE
TARLLPKTEVKTLTIKV
EEEECCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3185501 [H]