Click here to switch to the map view.

The map label for this gene is 78048329

Identifier: 78048329

GI number: 78048329

Start: 3152757

End: 3153023

Strand: Reverse

Name: 78048329

Synonym: XCV2773

Alternate gene names: NA

Gene position: 3153023-3152757 (Counterclockwise)

Preceding gene: 78048330

Following gene: 78048328

Centisome position: 60.89

GC content: 58.8

Gene sequence:

>267_bases
ATGAAGAAGAGCAGATTCAGCACCGAGCAGATCATCGGGTTTATCAAACAGGCCGACGCGGGCATGGCCGTGGCAGAGTT
GTGCCGTCGGCATGGTTTCAGCCCGGCCAGCTTTTATCAGTGGCGGGCCAAGTACGGGGGGATGGAGGCCGACGAGGCCA
AGCGGCTGAAAGAACTGGAGGTCCAGAACACTCGATTGAAGAAGTTGCTGGCCGAGGCGCACCTGGACATCGAAGCGCTG
AAGGTTGGCTTCGGGGTAAAACGCTAG

Upstream 100 bases:

>100_bases
GACATCTTGCCGGCCGACCTGTATGCGCGCTGGAGCTGACCTGCCCCCACTGAGCCGTACCAGCTGAAGCTATAAAGTCC
GTGAACCCAAGAGGACGGAC

Downstream 100 bases:

>100_bases
CCCCGCAACGCAAGCGCGAGGCAATCCGACGAATGCTCGAACACACCCCGTTGAGCGAGCGCCGGGCTTGCCGCCTTGCG
GGGCTGTCCCGCGATGCTTT

Product: IS1477 transposase

Products: NA

Alternate protein names: ORF4 [H]

Number of amino acids: Translated: 88; Mature: 88

Protein sequence:

>88_residues
MKKSRFSTEQIIGFIKQADAGMAVAELCRRHGFSPASFYQWRAKYGGMEADEAKRLKELEVQNTRLKKLLAEAHLDIEAL
KVGFGVKR

Sequences:

>Translated_88_residues
MKKSRFSTEQIIGFIKQADAGMAVAELCRRHGFSPASFYQWRAKYGGMEADEAKRLKELEVQNTRLKKLLAEAHLDIEAL
KVGFGVKR
>Mature_88_residues
MKKSRFSTEQIIGFIKQADAGMAVAELCRRHGFSPASFYQWRAKYGGMEADEAKRLKELEVQNTRLKKLLAEAHLDIEAL
KVGFGVKR

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 8 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002514 [H]

Pfam domain/function: PF01527 Transposase_8 [H]

EC number: NA

Molecular weight: Translated: 10001; Mature: 10001

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSRFSTEQIIGFIKQADAGMAVAELCRRHGFSPASFYQWRAKYGGMEADEAKRLKELE
CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
VQNTRLKKLLAEAHLDIEALKVGFGVKR
HHHHHHHHHHHHHHCCHHHHHHCCCCCC
>Mature Secondary Structure
MKKSRFSTEQIIGFIKQADAGMAVAELCRRHGFSPASFYQWRAKYGGMEADEAKRLKELE
CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
VQNTRLKKLLAEAHLDIEALKVGFGVKR
HHHHHHHHHHHHHHCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]