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The map label for this gene is cdh2 [H]

Identifier: 78048324

GI number: 78048324

Start: 3148264

End: 3149223

Strand: Reverse

Name: cdh2 [H]

Synonym: XCV2768

Alternate gene names: 78048324

Gene position: 3149223-3148264 (Counterclockwise)

Preceding gene: 78048325

Following gene: 78048323

Centisome position: 60.81

GC content: 65.0

Gene sequence:

>960_bases
ATGAGCCTGCGCATTCTCGTGACCGGCGCGTCCGGTTTTGTCGGTGGTGCATTCCTGCGGCGCTTTCAGGGGCAGCCGGG
CGTCGAGATTCACGGTATCGGCCGCCGCGCCAGCGACCTGCCCAACTACCATCGCATCGATCTGAGCCAGGCCTTCTCGC
TGGACTGGCAACCGGATGTGGTGATTCATGCAGCTGCCTTGGCCTCGCCGTGGGGCACGCGTGCGCAGTTTCAGCGGCAC
AATGTCCAGGCCACCGCCAACCTCATCGACTTCTGCAAGCGCAACGGCTGCCCGCGCCTGCTGTATGTCTCCTCCAGTTC
GGTGTTCTATCGCGAAGCGCATCAATACGGCCTGGATGAAGACAGCCCGATCGGCCCGGCGTTCGTCAATACATACGCAC
AAACCAAGTATCTTGGCGAGACGTTGCTGGATGACTATCCCGGGGAAAAGAGCGTGTTGCGCCCGCGTGCGGTATTCGGG
CCCGGCGACACGGTGCTGTTTCCGCGCGTGATCGCCGCCGCGCGCAAGGGTGCATTGCCACGTTTCGTCGGTCAGACCCA
GCCGGTGATCGGCGACCTGATCTATATCGATACGCTGTGCGATTACCTGTACCGCGCGGCCACCGCGCCGCAGTTGCAGG
CTGCTTACAATCTCACCAACGCACACCCGGTGGACCTGCAGCAGTTGTTGTTGGAGGTGCTGGCGCGCCTGCAGCTGCCG
TTGCCACGGCGCGAGGTGCGCATCGGCACCGCCTTGCGCATGGCCAGCGTGGTGGAGGCGGTGTATCGCGGGCTGCGGCT
GCGGGGCGAGCCGCCGATCACGCGCTTCGGCGTTGGCGTGTTCGCATATTCCAAGACCTTCGATCCGCGCCGCACGCTTG
CCGATCTGGGCCCGCCCAGCGTCGGCCTGGACGAGGGCGTGGACGCCTTCGTGCACTGGCAGGCAGCGCAGTGGACCTGA

Upstream 100 bases:

>100_bases
CCGTGCATCGCTTGCACGCCTTGTCGCACGCCCATCCGGAACTGGTCATCCTGCCTTCGCATTGCCAGCCGAGTCTTGAC
CGTTATCAACCGGAGTGGCG

Downstream 100 bases:

>100_bases
TCGTTCCCATCCTGGCGGCGCTGTATCTGGCCGTGCTGCTGGTCAAGACGGCGGCCGTGCTGTGGGTCATGCGTGGCGAA
CGCGCGAGGCCGGCGCGCCG

Product: NAD(P)H steroid dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MSLRILVTGASGFVGGAFLRRFQGQPGVEIHGIGRRASDLPNYHRIDLSQAFSLDWQPDVVIHAAALASPWGTRAQFQRH
NVQATANLIDFCKRNGCPRLLYVSSSSVFYREAHQYGLDEDSPIGPAFVNTYAQTKYLGETLLDDYPGEKSVLRPRAVFG
PGDTVLFPRVIAAARKGALPRFVGQTQPVIGDLIYIDTLCDYLYRAATAPQLQAAYNLTNAHPVDLQQLLLEVLARLQLP
LPRREVRIGTALRMASVVEAVYRGLRLRGEPPITRFGVGVFAYSKTFDPRRTLADLGPPSVGLDEGVDAFVHWQAAQWT

Sequences:

>Translated_319_residues
MSLRILVTGASGFVGGAFLRRFQGQPGVEIHGIGRRASDLPNYHRIDLSQAFSLDWQPDVVIHAAALASPWGTRAQFQRH
NVQATANLIDFCKRNGCPRLLYVSSSSVFYREAHQYGLDEDSPIGPAFVNTYAQTKYLGETLLDDYPGEKSVLRPRAVFG
PGDTVLFPRVIAAARKGALPRFVGQTQPVIGDLIYIDTLCDYLYRAATAPQLQAAYNLTNAHPVDLQQLLLEVLARLQLP
LPRREVRIGTALRMASVVEAVYRGLRLRGEPPITRFGVGVFAYSKTFDPRRTLADLGPPSVGLDEGVDAFVHWQAAQWT
>Mature_318_residues
SLRILVTGASGFVGGAFLRRFQGQPGVEIHGIGRRASDLPNYHRIDLSQAFSLDWQPDVVIHAAALASPWGTRAQFQRHN
VQATANLIDFCKRNGCPRLLYVSSSSVFYREAHQYGLDEDSPIGPAFVNTYAQTKYLGETLLDDYPGEKSVLRPRAVFGP
GDTVLFPRVIAAARKGALPRFVGQTQPVIGDLIYIDTLCDYLYRAATAPQLQAAYNLTNAHPVDLQQLLLEVLARLQLPL
PRREVRIGTALRMASVVEAVYRGLRLRGEPPITRFGVGVFAYSKTFDPRRTLADLGPPSVGLDEGVDAFVHWQAAQWT

Specific function: Unknown

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI193211614, Length=263, Percent_Identity=26.9961977186312, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI8393516, Length=263, Percent_Identity=26.9961977186312, Blast_Score=74, Evalue=1e-13,
Organism=Escherichia coli, GI87081792, Length=335, Percent_Identity=25.3731343283582, Blast_Score=97, Evalue=1e-21,
Organism=Saccharomyces cerevisiae, GI6321437, Length=347, Percent_Identity=24.7838616714697, Blast_Score=77, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 35246; Mature: 35115

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLRILVTGASGFVGGAFLRRFQGQPGVEIHGIGRRASDLPNYHRIDLSQAFSLDWQPDV
CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEECCCCHHCCCCCEEECHHHHHCCCCCCCC
VIHAAALASPWGTRAQFQRHNVQATANLIDFCKRNGCPRLLYVSSSSVFYREAHQYGLDE
EEEHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCC
DSPIGPAFVNTYAQTKYLGETLLDDYPGEKSVLRPRAVFGPGDTVLFPRVIAAARKGALP
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCEEECCCCCHHHHHHHHHHHHCCCH
RFVGQTQPVIGDLIYIDTLCDYLYRAATAPQLQAAYNLTNAHPVDLQQLLLEVLARLQLP
HHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
LPRREVRIGTALRMASVVEAVYRGLRLRGEPPITRFGVGVFAYSKTFDPRRTLADLGPPS
CCHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCHHHCCCCEEECCCCCHHHHHHHCCCCC
VGLDEGVDAFVHWQAAQWT
CCCCCCCCEEEEEEECCCC
>Mature Secondary Structure 
SLRILVTGASGFVGGAFLRRFQGQPGVEIHGIGRRASDLPNYHRIDLSQAFSLDWQPDV
CEEEEEECCCCHHHHHHHHHHCCCCCCEEEECCCCHHCCCCCEEECHHHHHCCCCCCCC
VIHAAALASPWGTRAQFQRHNVQATANLIDFCKRNGCPRLLYVSSSSVFYREAHQYGLDE
EEEHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCC
DSPIGPAFVNTYAQTKYLGETLLDDYPGEKSVLRPRAVFGPGDTVLFPRVIAAARKGALP
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCEEECCCCCHHHHHHHHHHHHCCCH
RFVGQTQPVIGDLIYIDTLCDYLYRAATAPQLQAAYNLTNAHPVDLQQLLLEVLARLQLP
HHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
LPRREVRIGTALRMASVVEAVYRGLRLRGEPPITRFGVGVFAYSKTFDPRRTLADLGPPS
CCHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCHHHCCCCEEECCCCCHHHHHHHCCCCC
VGLDEGVDAFVHWQAAQWT
CCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]