| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
Click here to switch to the map view.
The map label for this gene is 78048280
Identifier: 78048280
GI number: 78048280
Start: 3088883
End: 3091258
Strand: Reverse
Name: 78048280
Synonym: XCV2724
Alternate gene names: NA
Gene position: 3091258-3088883 (Counterclockwise)
Preceding gene: 78048281
Following gene: 78048266
Centisome position: 59.69
GC content: 65.36
Gene sequence:
>2376_bases ATGACAGAAGCGCACCCGAGCGAATCGACCTGCAACCACACGCCGTCGTTGTCGCGGCGGCGCTTTCTAGCCTGGAGCAG CCTGGCGGTAGCTGCCGGCTTCCTGAGGTTCCCGGCCCAGGCCAGCGCTGCACAACCGGGCAGCGTGCGCGCGGTGCCGC TCGCCCAGGTCAGGCTCACGCCATCGCTGTTCCTGGATGCGCTGCACACCAACCGGCGCTATCTGATGCGGCTGCAGCCG GACCGCTTGCTGCACAACTTCGTGCTGTATGCCGGCCTCGACCCGAAGGCGCCAGCCTATGGCGGCTGGGAGGCGGACAC CATCGCCGGGCATACGCTCGGCCACTATCTCAGTGCGCTGGCGCTCATGCACGCGCAAACCGGCGATGCGCAGTGCCGCA CACGCGCCGGGTATCTGGTCGGCGAACTGGCGCGCTGCCAGGCGCATGCCGGCGATGGCTACGTGGCCGGCTTTACGCGC AAGAACGCAGCCGGGCAGATCGAAAGCGGGCGCGCGGTCTTCGACGAGCTCAAACGCGGCAAGATCGACCCGGCGCCGTT CTATCTCAACGGCAGCTGGGCACCGCTGTACACGTGGCACAAATTGTTCGCCGGCCTGCTCGACGTGCATGCGCATTGCG ATAACGCGCAAGCGCTGCAGGTGGCGGTGAGCTTGGCTGGATACCTGCAAGGCATCTTCTCCGCGCTAGACGAGGCGCAA TTGCAAAAAGTGCTGTCGTGCGAATTCGGCGGCCTCAACGAATCGTTCGTCGAACTGCATGTGCGAACCAATGATGCGCA ATGGTTGGCGCTGGCGCAGCGCCTGCATCACCACGCCGTGCTCGACCCGTTGGTCGCCCAGCGCGACGAGCTGGCCCACC AGCATTCCAATACCAATATCCCCAAACTGATCGGCCTGGCGCGCGAGTACGAAGTCACCGGCGATGCCGCATCCGGTGCC GCAGCGCGCTTCTTCTGGCACACCGTCACCGACCACCACACCTATGTGATCGGTGGCAATGGCGATCGCGAATATTTCCA GCAGCCGGACAGCATTTCAAAGTTCCTCACCGAGCAGACCTGCGAGCATTGCGCCAGCTACAACATGCTCAAGCTCACCC GTCACCTGTATCAGTGGGGCCCGCAGGCTGAGTTGTTCGACTACTACGAGCGCACCTTGCTCAATCACGTGATGGCGCAG CAGCACCCACGCACCGGCATGTTTACGTATATGACGCCGTTGCTGGCCGGCGAAGCGCGTGGCTGGTCGTCGCCGTTCGA TGATTTCTGGTGCTGCGTTGGTAGCGGCATGGAAGCGCACGCGCAATTTGGCGATTCCATCTACTGGCAGGACGGGCAGG GCGTCTACGTCAATTTGTATGTGCCCTCCATGGTGCACGATGCTGCCGGCCTGGACATGACTTTGCACAGCGCCTTGCCA GAGCAGGGCAGCGCCTCGCTGCGCATCGATGCCGCGCCGGCCGAGCAACGCACCCTCGCACTGCGCGTGCCAGGTTGGGC GCAACAGCCGCGCCTGCAACTCAATGGTCAGCCTGTCGATACCGCCGCCAGCGATGGCTATCTGCGCATCACGCGCGTCT GGCAGCGCGGCGACACCCTGAGCCTGGCGTTCGACATGCCGCTGCGCCTGGAAGCGACCTCGGACGATCCCGCCTGGGTC TCGGTGCTGCGCGGGCCGCTGGTGCTTGCCGTGGATCTGGGCGATGCCGCCAAGCCCTGGTCGGGCAAGACCCCGGCATT GATCGGGGGGCAGGACATCCTGCAACGCCTGCAGCCGGTGCCGGGCAAGACAGCCTTCGTCTACAACGATGGCGTGCAGC AGTGGCAGTTGTCCCCGTTCTACGCCCAGTTCGACCGCCGCAGCGCGGTCTACCTGGAACACCGCGACGCCGCCGCATGG CAGCAACGCCAGACCGAACTGGCGGCAGTAGCGGCGGCGCAACACGCACTCGACACCCGCGCGCTCGATCGCATCGCGCT AGGCGATGAGGCCTCCGAAAAGGCACATGCACTGCAGGGGGGAAATTCCAACCCGCTCAGCTACCGCCGCCGGCCCGGCC GCGACGTGCGGACTGGCGGCTTCATGGCCTTCACCCTGCGCAATACCGCCCAGGCCCGCATCCTGCGCCTGCGCTACTGG GGTGACGAAACCCGCCGTCGCTTCCGCCTCCTCGCCGACGGCGAACTCATCGCCAACGAACGCCTTGACGGCAACCGCGG CCTGGAGTTCGTCGATGTGGACTACGCATTGCCAGCAACGATCGCCGGTCGCGACACCCTGCAGATTCGCATCGAACCGG AGACCGGTTATTCGGCAGGGCCTGCATTTGGGTGTTGGGTGCTGGCGTCGGCGTGA
Upstream 100 bases:
>100_bases CGCAGACGCCACGTCACGCCAGCATTGCCAGCGCAGCGGCGATCATGATGTTGCGAACCTGTGCGCATGCCTGCGCGCCA TCAGGAGCTGAGCTAATCCC
Downstream 100 bases:
>100_bases GCGCTGCAGCTAGCGCATCTTGAAAGTATGACGAGGTGCTCGCGCGACCTCTGCAGAGCGCATGGCACCACAGAGCGAAG AAATCGCGCCCGCAGCTACA
Product: putative secreted protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 791; Mature: 790
Protein sequence:
>791_residues MTEAHPSESTCNHTPSLSRRRFLAWSSLAVAAGFLRFPAQASAAQPGSVRAVPLAQVRLTPSLFLDALHTNRRYLMRLQP DRLLHNFVLYAGLDPKAPAYGGWEADTIAGHTLGHYLSALALMHAQTGDAQCRTRAGYLVGELARCQAHAGDGYVAGFTR KNAAGQIESGRAVFDELKRGKIDPAPFYLNGSWAPLYTWHKLFAGLLDVHAHCDNAQALQVAVSLAGYLQGIFSALDEAQ LQKVLSCEFGGLNESFVELHVRTNDAQWLALAQRLHHHAVLDPLVAQRDELAHQHSNTNIPKLIGLAREYEVTGDAASGA AARFFWHTVTDHHTYVIGGNGDREYFQQPDSISKFLTEQTCEHCASYNMLKLTRHLYQWGPQAELFDYYERTLLNHVMAQ QHPRTGMFTYMTPLLAGEARGWSSPFDDFWCCVGSGMEAHAQFGDSIYWQDGQGVYVNLYVPSMVHDAAGLDMTLHSALP EQGSASLRIDAAPAEQRTLALRVPGWAQQPRLQLNGQPVDTAASDGYLRITRVWQRGDTLSLAFDMPLRLEATSDDPAWV SVLRGPLVLAVDLGDAAKPWSGKTPALIGGQDILQRLQPVPGKTAFVYNDGVQQWQLSPFYAQFDRRSAVYLEHRDAAAW QQRQTELAAVAAAQHALDTRALDRIALGDEASEKAHALQGGNSNPLSYRRRPGRDVRTGGFMAFTLRNTAQARILRLRYW GDETRRRFRLLADGELIANERLDGNRGLEFVDVDYALPATIAGRDTLQIRIEPETGYSAGPAFGCWVLASA
Sequences:
>Translated_791_residues MTEAHPSESTCNHTPSLSRRRFLAWSSLAVAAGFLRFPAQASAAQPGSVRAVPLAQVRLTPSLFLDALHTNRRYLMRLQP DRLLHNFVLYAGLDPKAPAYGGWEADTIAGHTLGHYLSALALMHAQTGDAQCRTRAGYLVGELARCQAHAGDGYVAGFTR KNAAGQIESGRAVFDELKRGKIDPAPFYLNGSWAPLYTWHKLFAGLLDVHAHCDNAQALQVAVSLAGYLQGIFSALDEAQ LQKVLSCEFGGLNESFVELHVRTNDAQWLALAQRLHHHAVLDPLVAQRDELAHQHSNTNIPKLIGLAREYEVTGDAASGA AARFFWHTVTDHHTYVIGGNGDREYFQQPDSISKFLTEQTCEHCASYNMLKLTRHLYQWGPQAELFDYYERTLLNHVMAQ QHPRTGMFTYMTPLLAGEARGWSSPFDDFWCCVGSGMEAHAQFGDSIYWQDGQGVYVNLYVPSMVHDAAGLDMTLHSALP EQGSASLRIDAAPAEQRTLALRVPGWAQQPRLQLNGQPVDTAASDGYLRITRVWQRGDTLSLAFDMPLRLEATSDDPAWV SVLRGPLVLAVDLGDAAKPWSGKTPALIGGQDILQRLQPVPGKTAFVYNDGVQQWQLSPFYAQFDRRSAVYLEHRDAAAW QQRQTELAAVAAAQHALDTRALDRIALGDEASEKAHALQGGNSNPLSYRRRPGRDVRTGGFMAFTLRNTAQARILRLRYW GDETRRRFRLLADGELIANERLDGNRGLEFVDVDYALPATIAGRDTLQIRIEPETGYSAGPAFGCWVLASA >Mature_790_residues TEAHPSESTCNHTPSLSRRRFLAWSSLAVAAGFLRFPAQASAAQPGSVRAVPLAQVRLTPSLFLDALHTNRRYLMRLQPD RLLHNFVLYAGLDPKAPAYGGWEADTIAGHTLGHYLSALALMHAQTGDAQCRTRAGYLVGELARCQAHAGDGYVAGFTRK NAAGQIESGRAVFDELKRGKIDPAPFYLNGSWAPLYTWHKLFAGLLDVHAHCDNAQALQVAVSLAGYLQGIFSALDEAQL QKVLSCEFGGLNESFVELHVRTNDAQWLALAQRLHHHAVLDPLVAQRDELAHQHSNTNIPKLIGLAREYEVTGDAASGAA ARFFWHTVTDHHTYVIGGNGDREYFQQPDSISKFLTEQTCEHCASYNMLKLTRHLYQWGPQAELFDYYERTLLNHVMAQQ HPRTGMFTYMTPLLAGEARGWSSPFDDFWCCVGSGMEAHAQFGDSIYWQDGQGVYVNLYVPSMVHDAAGLDMTLHSALPE QGSASLRIDAAPAEQRTLALRVPGWAQQPRLQLNGQPVDTAASDGYLRITRVWQRGDTLSLAFDMPLRLEATSDDPAWVS VLRGPLVLAVDLGDAAKPWSGKTPALIGGQDILQRLQPVPGKTAFVYNDGVQQWQLSPFYAQFDRRSAVYLEHRDAAAWQ QRQTELAAVAAAQHALDTRALDRIALGDEASEKAHALQGGNSNPLSYRRRPGRDVRTGGFMAFTLRNTAQARILRLRYWG DETRRRFRLLADGELIANERLDGNRGLEFVDVDYALPATIAGRDTLQIRIEPETGYSAGPAFGCWVLASA
Specific function: Unknown
COG id: COG3533
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 87433; Mature: 87302
Theoretical pI: Translated: 6.86; Mature: 6.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEAHPSESTCNHTPSLSRRRFLAWSSLAVAAGFLRFPAQASAAQPGSVRAVPLAQVRLT CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEC PSLFLDALHTNRRYLMRLQPDRLLHNFVLYAGLDPKAPAYGGWEADTIAGHTLGHYLSAL HHHHHHHHHCCCEEEEEECHHHHHHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH ALMHAQTGDAQCRTRAGYLVGELARCQAHAGDGYVAGFTRKNAAGQIESGRAVFDELKRG HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCC KIDPAPFYLNGSWAPLYTWHKLFAGLLDVHAHCDNAQALQVAVSLAGYLQGIFSALDEAQ CCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LQKVLSCEFGGLNESFVELHVRTNDAQWLALAQRLHHHAVLDPLVAQRDELAHQHSNTNI HHHHHHCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC PKLIGLAREYEVTGDAASGAAARFFWHTVTDHHTYVIGGNGDREYFQQPDSISKFLTEQT HHHHHHHHHEEECCCCCCCCCCEEEEEEECCCEEEEEECCCCHHHHCCCHHHHHHHHHHH CEHCASYNMLKLTRHLYQWGPQAELFDYYERTLLNHVMAQQHPRTGMFTYMTPLLAGEAR HHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC GWSSPFDDFWCCVGSGMEAHAQFGDSIYWQDGQGVYVNLYVPSMVHDAAGLDMTLHSALP CCCCCHHHHHHHHCCCCHHHHHCCCCEEEECCCCEEEEEECCHHHHHHCCCCEEHHHCCC EQGSASLRIDAAPAEQRTLALRVPGWAQQPRLQLNGQPVDTAASDGYLRITRVWQRGDTL CCCCCEEEEECCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCEEEEEEEECCCCEE SLAFDMPLRLEATSDDPAWVSVLRGPLVLAVDLGDAAKPWSGKTPALIGGQDILQRLQPV EEEECCCEEEEECCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEECCHHHHHHHCCC PGKTAFVYNDGVQQWQLSPFYAQFDRRSAVYLEHRDAAAWQQRQTELAAVAAAQHALDTR CCCEEEEECCCCCCEECCHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH ALDRIALGDEASEKAHALQGGNSNPLSYRRRPGRDVRTGGFMAFTLRNTAQARILRLRYW HHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEC GDETRRRFRLLADGELIANERLDGNRGLEFVDVDYALPATIAGRDTLQIRIEPETGYSAG CCHHHHHEEEEECCCEEECCCCCCCCCCEEEEECCCCCCEECCCCEEEEEEECCCCCCCC PAFGCWVLASA CCCEEEEEECC >Mature Secondary Structure TEAHPSESTCNHTPSLSRRRFLAWSSLAVAAGFLRFPAQASAAQPGSVRAVPLAQVRLT CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEC PSLFLDALHTNRRYLMRLQPDRLLHNFVLYAGLDPKAPAYGGWEADTIAGHTLGHYLSAL HHHHHHHHHCCCEEEEEECHHHHHHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH ALMHAQTGDAQCRTRAGYLVGELARCQAHAGDGYVAGFTRKNAAGQIESGRAVFDELKRG HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCC KIDPAPFYLNGSWAPLYTWHKLFAGLLDVHAHCDNAQALQVAVSLAGYLQGIFSALDEAQ CCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LQKVLSCEFGGLNESFVELHVRTNDAQWLALAQRLHHHAVLDPLVAQRDELAHQHSNTNI HHHHHHCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC PKLIGLAREYEVTGDAASGAAARFFWHTVTDHHTYVIGGNGDREYFQQPDSISKFLTEQT HHHHHHHHHEEECCCCCCCCCCEEEEEEECCCEEEEEECCCCHHHHCCCHHHHHHHHHHH CEHCASYNMLKLTRHLYQWGPQAELFDYYERTLLNHVMAQQHPRTGMFTYMTPLLAGEAR HHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC GWSSPFDDFWCCVGSGMEAHAQFGDSIYWQDGQGVYVNLYVPSMVHDAAGLDMTLHSALP CCCCCHHHHHHHHCCCCHHHHHCCCCEEEECCCCEEEEEECCHHHHHHCCCCEEHHHCCC EQGSASLRIDAAPAEQRTLALRVPGWAQQPRLQLNGQPVDTAASDGYLRITRVWQRGDTL CCCCCEEEEECCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCEEEEEEEECCCCEE SLAFDMPLRLEATSDDPAWVSVLRGPLVLAVDLGDAAKPWSGKTPALIGGQDILQRLQPV EEEECCCEEEEECCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEECCHHHHHHHCCC PGKTAFVYNDGVQQWQLSPFYAQFDRRSAVYLEHRDAAAWQQRQTELAAVAAAQHALDTR CCCEEEEECCCCCCEECCHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH ALDRIALGDEASEKAHALQGGNSNPLSYRRRPGRDVRTGGFMAFTLRNTAQARILRLRYW HHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEC GDETRRRFRLLADGELIANERLDGNRGLEFVDVDYALPATIAGRDTLQIRIEPETGYSAG CCHHHHHEEEEECCCEEECCCCCCCCCCEEEEECCCCCCEECCCCEEEEEEECCCCCCCC PAFGCWVLASA CCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA