| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is yhjX [H]
Identifier: 78048222
GI number: 78048222
Start: 3005661
End: 3007340
Strand: Reverse
Name: yhjX [H]
Synonym: XCV2666
Alternate gene names: 78048222
Gene position: 3007340-3005661 (Counterclockwise)
Preceding gene: 78048230
Following gene: 78048221
Centisome position: 58.07
GC content: 65.48
Gene sequence:
>1680_bases ATGACGCAAGGGTCCACCGTGGCGACAGCCAGCGGCGCAGACGCCGGTTTACTGTCCAAGGAGCGCATCATTGCGCGGCC GGGGTTCAATCGTTGGTTGGTACCGCCGGCAGCACTGGCGATCCACCTGTGCATCGGCATGGCCTACGGCTTCAGCGTGT TCTGGCTGCCGTTGTCCAAGGCGCTGGGCATCACCGAGTCGATCGCATGCCCGGCCGATATGGGCCTGTTCGCACGCATG GTGGCCACCACCTGCGACTGGAAGATCAGCGAGCTGCAGTGGATGTACACGCTGTTCTTCGTGCTGCTGGGGTGCTCGGC AGCGATCTGGGGCGGCTGGCTGGAACGGGCCGGCCCGCGCAAGGCCGGCGTGGTCTCGGCGCTGTGCTGGTGCGGCGGGC TGGTGATCTCGGCAGTCGGCATCCACTTCCATCAGATCTGGATGCTGTGGCTGGGCTCGGGCGTGATCGGCGGCATCGGC CTGGGGTTGGGCTACATCTCGCCGGTGTCGACGCTGATCAAGTGGTTCCCGGACCGACGCGGTATGGCGACGGGCATGGC GATCATGGGCTTTGGCGGCGGCGCGATGATCGGCAGCCCCTTGGCCGATGCGCTGATGCGCCATTTCGCGACCCCCACCT CGGTGGGCGTGATGGAAACCTTCCTGGTGATGGCGGCGCTGTACTTCGTCTTCATGATGGCCGGCGCGTTCGGTTACCGC GTGCCGCCGAGCGGCTGGACCCCGGCCGGCTGGACCGCGCCGGTGGCCAGCAGCAACGCCATGATCACCGCCAACCACGT GCATGTGAAAAAGGTCTGGGGCATCCCGCAGTTCTGGTTGCTGTGGGGCGTGCTGTGCCTGAACGTCTCGGCCGGCATCG GCGTGATCGGCATGTCCTCGCCGATGTTGCAGGAAGTGTTCGGCGGCCGTCTGATCGGCGTGGATGTGGGCTTCGCCAGC CTGGATCCGACCCAGCTGGCCAGCATCGCGGCCATCGCGGCCGGCTTCACCGGTCTGCTCAGCCTGTTCAACATCGGCGG CCGGTTCTTCTGGGCCAGCATGTCCGACAAGCTCGGCCGCAAGAACACCTACACGCTGTTCTTCGTGCTGGGCATCTGCC TGTATGCAGCGGCGCCGTCGGCTGGCGGTATTGGCGGCATCGCGCTGTTTGCGGGCATCTTCTGCATCATCCTGTCGATG TACGGCGGCGGTTTCGCCACCATTCCGGCGTATCTGGCCGACCTGTTCGGTACCCAGATGGTCGGCGCCATCCACGGCCG GTTGCTGACTGCCTGGGCAACCGCCGGCATCCTGGGTCCGGTGGTGGTGGGTTACATGCGCGAGTACCAGCTGGCGCACG GCAGCCCGCCGTCACAGGTCTACAACACCACCATGTACATCCTTGCCGGCATGCTCGTGCTCGGCCTGATCTGCAATCTG TTGGTGCGCCCGGTGGCCGCACGTCACTTCATGACGCCCGACGAACTGGCACGCGAAAAGCAGCTGGCGCACGAAAAGGT CGACCGCACCGGGCACGGCACGATTCCACCGGAACAAATGGCGCGCATCGGTCATGGCGGCAACCCCGCGCTGGTCGCGT TTGCCTGGCTGGCGGTGGGTATCCCGATGCTGTTCGGTATCTGGGTCACGCTGCAAAAAGCCTTCGTGCTGTTCCATTGA
Upstream 100 bases:
>100_bases GAACGGCCGACAGGACGTCGCCATCGCCCGCCAGGCGTTGGTGGTAGTCCTGTCAGCCGTGTTTTCGCAGTTCATCGTTG GTTTTTTGGGGGAAATGAGA
Downstream 100 bases:
>100_bases GGTGAGATGACCAGTCCGTCTTCCCGCTCCGTGCGTCCGGGCAGTGTGGTACGCACGGTCCGTCGCCATCGAGGCGGCCG CAGCGCCACGGTGCAGGACA
Product: major facilitator superfamily protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 559; Mature: 558
Protein sequence:
>559_residues MTQGSTVATASGADAGLLSKERIIARPGFNRWLVPPAALAIHLCIGMAYGFSVFWLPLSKALGITESIACPADMGLFARM VATTCDWKISELQWMYTLFFVLLGCSAAIWGGWLERAGPRKAGVVSALCWCGGLVISAVGIHFHQIWMLWLGSGVIGGIG LGLGYISPVSTLIKWFPDRRGMATGMAIMGFGGGAMIGSPLADALMRHFATPTSVGVMETFLVMAALYFVFMMAGAFGYR VPPSGWTPAGWTAPVASSNAMITANHVHVKKVWGIPQFWLLWGVLCLNVSAGIGVIGMSSPMLQEVFGGRLIGVDVGFAS LDPTQLASIAAIAAGFTGLLSLFNIGGRFFWASMSDKLGRKNTYTLFFVLGICLYAAAPSAGGIGGIALFAGIFCIILSM YGGGFATIPAYLADLFGTQMVGAIHGRLLTAWATAGILGPVVVGYMREYQLAHGSPPSQVYNTTMYILAGMLVLGLICNL LVRPVAARHFMTPDELAREKQLAHEKVDRTGHGTIPPEQMARIGHGGNPALVAFAWLAVGIPMLFGIWVTLQKAFVLFH
Sequences:
>Translated_559_residues MTQGSTVATASGADAGLLSKERIIARPGFNRWLVPPAALAIHLCIGMAYGFSVFWLPLSKALGITESIACPADMGLFARM VATTCDWKISELQWMYTLFFVLLGCSAAIWGGWLERAGPRKAGVVSALCWCGGLVISAVGIHFHQIWMLWLGSGVIGGIG LGLGYISPVSTLIKWFPDRRGMATGMAIMGFGGGAMIGSPLADALMRHFATPTSVGVMETFLVMAALYFVFMMAGAFGYR VPPSGWTPAGWTAPVASSNAMITANHVHVKKVWGIPQFWLLWGVLCLNVSAGIGVIGMSSPMLQEVFGGRLIGVDVGFAS LDPTQLASIAAIAAGFTGLLSLFNIGGRFFWASMSDKLGRKNTYTLFFVLGICLYAAAPSAGGIGGIALFAGIFCIILSM YGGGFATIPAYLADLFGTQMVGAIHGRLLTAWATAGILGPVVVGYMREYQLAHGSPPSQVYNTTMYILAGMLVLGLICNL LVRPVAARHFMTPDELAREKQLAHEKVDRTGHGTIPPEQMARIGHGGNPALVAFAWLAVGIPMLFGIWVTLQKAFVLFH >Mature_558_residues TQGSTVATASGADAGLLSKERIIARPGFNRWLVPPAALAIHLCIGMAYGFSVFWLPLSKALGITESIACPADMGLFARMV ATTCDWKISELQWMYTLFFVLLGCSAAIWGGWLERAGPRKAGVVSALCWCGGLVISAVGIHFHQIWMLWLGSGVIGGIGL GLGYISPVSTLIKWFPDRRGMATGMAIMGFGGGAMIGSPLADALMRHFATPTSVGVMETFLVMAALYFVFMMAGAFGYRV PPSGWTPAGWTAPVASSNAMITANHVHVKKVWGIPQFWLLWGVLCLNVSAGIGVIGMSSPMLQEVFGGRLIGVDVGFASL DPTQLASIAAIAAGFTGLLSLFNIGGRFFWASMSDKLGRKNTYTLFFVLGICLYAAAPSAGGIGGIALFAGIFCIILSMY GGGFATIPAYLADLFGTQMVGAIHGRLLTAWATAGILGPVVVGYMREYQLAHGSPPSQVYNTTMYILAGMLVLGLICNLL VRPVAARHFMTPDELAREKQLAHEKVDRTGHGTIPPEQMARIGHGGNPALVAFAWLAVGIPMLFGIWVTLQKAFVLFH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789969, Length=370, Percent_Identity=24.0540540540541, Blast_Score=103, Evalue=2e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR004741 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 59370; Mature: 59239
Theoretical pI: Translated: 9.08; Mature: 9.08
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQGSTVATASGADAGLLSKERIIARPGFNRWLVPPAALAIHLCIGMAYGFSVFWLPLSK CCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH ALGITESIACPADMGLFARMVATTCDWKISELQWMYTLFFVLLGCSAAIWGGWLERAGPR HHCCHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC KAGVVSALCWCGGLVISAVGIHFHQIWMLWLGSGVIGGIGLGLGYISPVSTLIKWFPDRR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC GMATGMAIMGFGGGAMIGSPLADALMRHFATPTSVGVMETFLVMAALYFVFMMAGAFGYR CCHHCEEEEECCCCHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC VPPSGWTPAGWTAPVASSNAMITANHVHVKKVWGIPQFWLLWGVLCLNVSAGIGVIGMSS CCCCCCCCCCCCCCCCCCCCEEEECCEEEHHHCCCCHHHHHHHHHHHHHHCCCCEEECCC PMLQEVFGGRLIGVDVGFASLDPTQLASIAAIAAGFTGLLSLFNIGGRFFWASMSDKLGR HHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHCCC KNTYTLFFVLGICLYAAAPSAGGIGGIALFAGIFCIILSMYGGGFATIPAYLADLFGTQM CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH VGAIHGRLLTAWATAGILGPVVVGYMREYQLAHGSPPSQVYNTTMYILAGMLVLGLICNL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH LVRPVAARHFMTPDELAREKQLAHEKVDRTGHGTIPPEQMARIGHGGNPALVAFAWLAVG HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHH IPMLFGIWVTLQKAFVLFH HHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TQGSTVATASGADAGLLSKERIIARPGFNRWLVPPAALAIHLCIGMAYGFSVFWLPLSK CCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH ALGITESIACPADMGLFARMVATTCDWKISELQWMYTLFFVLLGCSAAIWGGWLERAGPR HHCCHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC KAGVVSALCWCGGLVISAVGIHFHQIWMLWLGSGVIGGIGLGLGYISPVSTLIKWFPDRR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC GMATGMAIMGFGGGAMIGSPLADALMRHFATPTSVGVMETFLVMAALYFVFMMAGAFGYR CCHHCEEEEECCCCHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC VPPSGWTPAGWTAPVASSNAMITANHVHVKKVWGIPQFWLLWGVLCLNVSAGIGVIGMSS CCCCCCCCCCCCCCCCCCCCEEEECCEEEHHHCCCCHHHHHHHHHHHHHHCCCCEEECCC PMLQEVFGGRLIGVDVGFASLDPTQLASIAAIAAGFTGLLSLFNIGGRFFWASMSDKLGR HHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHCCC KNTYTLFFVLGICLYAAAPSAGGIGGIALFAGIFCIILSMYGGGFATIPAYLADLFGTQM CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH VGAIHGRLLTAWATAGILGPVVVGYMREYQLAHGSPPSQVYNTTMYILAGMLVLGLICNL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH LVRPVAARHFMTPDELAREKQLAHEKVDRTGHGTIPPEQMARIGHGGNPALVAFAWLAVG HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHH IPMLFGIWVTLQKAFVLFH HHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]