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The map label for this gene is ydeP [H]

Identifier: 78048220

GI number: 78048220

Start: 3002464

End: 3004812

Strand: Reverse

Name: ydeP [H]

Synonym: XCV2664

Alternate gene names: 78048220

Gene position: 3004812-3002464 (Counterclockwise)

Preceding gene: 78048221

Following gene: 78048219

Centisome position: 58.03

GC content: 65.26

Gene sequence:

>2349_bases
ATGAGCAAGAAAACCATCAAGCAATACGACAATCCCGCGGGCGGCTGGGGCGCATTGCGCTCGGTGGCCAAGCACCTGAT
GGAACAGGACATCGCCGTGCAGGGCGCCAAGACGCTGCTGCACGCCAACCAGCCGGACGGTTTCGACTGCCCCGGTTGTG
CCTGGCCGGATCGCGACCACACGTCCACGTTCGAATTCTGCGAAAACGGCGCCAAGGCCGTGGCGGCCGAGTCCACCGCA
CGTCGCGCCGGGCCGGAGCTGTTCGCTTCGCACACCGTCAGCCTGCTGTCGCAATACAGCGATTACTGGTTGGAAGGGCA
GGGTCGCCTGACCCACCCGATGCGCTACGACGCTGCGACCGACCACTACGTGCCGGTGAGCTGGGACGATGCCTTTGCGC
AGATCGCGCGGCATCTCAATGGCCTGGCAACGCCGGATGAGGCGATCTTCTACACCTCCGGGCGCACCAGCAACGAGGCA
GCGTTCCTGTATCAGTTGTTCGTGCGCGAGTTCGGCACCAACAATTTCCCCGATTGCTCCAACATGTGCCATGAGCCCTC
CGGCACCGCGCTGCGGTCGCAGATCGGCGTGGGCAAGGGCACGGTGTCGCTGCACGATTTCGAGCTGGCCGACGCCATCT
TCATCTTCGGGCAGAACCCGGGCACCAATCATCCGCGCATGCTGGGCGAGTTGCGTCAGGCCTCCAAGCGCGGTGCGGCG
ATTGCGGCGTTCAACCCGCTGCGCGAGCGCGGGCTGGAAAAGTTCGCCGACCCGCAGGACAAGCTGGAGATGTTGCACAA
CGGCTCCACGCGCATCGCTTCGGATTATTTCCAGCTCAAGATCGGCGGCGACCTGGCTGCGGTGAAGGGCATCATCAAGC
ACGTGCTGGAGCGCGATGCGCAGGCGCAGCGCGATGGCACGCCGCGCTTGCTGGACCTGGAGTTCATCCAGGCGCACACC
GCCAATTTCGAGGCGTTCGCTGCCGACGTGCACGCGGAGCGCTGGGACACCATCGTCGAAGAATCCGGGCTGGACGAAAC
CGCGCTGCGCAAGGCCGGCGAGATCTATCTCAATGCCGAGCGCGTGATTGCCTGCTGGGGCATGGGCATCACCCAGCACA
AGCATTCGGTGGCGACCATCCACATGATCACCAACCTGCTGCTGCTGCGCGGCAACCTGGGCCGGCCCGGCGCGGGCGTC
TGCCCGGTGCGCGGGCACAGCAACGTGCAGGGCGACCGCACGATGATGATCTATGAAAAGCCGCCGGCCGCGTTCCTGGA
CAAGCTGCAATCGGTGTTCGGTTTCGCGCCCCCGCGCGCAGACGGGTTCGATACCGTGGGTGCGATCGAGGCGATGCTGG
ATGGGCGGGGCAAGGTGTTCTTCGCGATGGGCGGCAATTTTGCTGCCGCCACGCCGGATACCGATGCCACGCACCGCGCG
TTGCGCAACTGCGAATTGACCGTGCATGTCACCACCAAGCTCAATCGCAGCCACCTGGTGCATGGGCGCGATGCGTTGAT
CCTGCCGTGTCTTGGGCGCACCGAGATCGACATCCAGGATGCCGGCGCACAAGGCGTGACGGTGGAAGATTCGATGAGCA
TGGTGCACCTGTCGGCCGGCATCAATCCGCCGGCCTCGCCGGACCTGCTGTCGGAACCGGCGATCGTGGCGCGCATGGCC
GAAGCCACGCTGGGCGCACGCAGCGCGATCCGCTGGCGCTGGCTGGTGGGCGATTACGACCGCGTGCGCGATCTCATCGC
GCAGGTGTTTCCGGACTTTGCCGGGTTCAACGAACGCGTGCGTACGCCGGGTGGGTTCCGTTTGTCCAATACCGCGCGCG
ACCGCAACTGGGTCACACCTGAGCAGCGTGCGGTGTTCAAGCCGCATGCGGTGCCCACCGACAATCCCATCCACCGAGCG
CGCCGCAGCCACGCCGAGCAGATGGTGTTTACGCTGGCCACCACGCGTTCGCACGATCAGTACAACACCACCATCTATGG
GTTGGACGACCGCTATCGCGGTGTGTTCGGCGAGCGCCGCGTGCTGTTCATCAATGGGGCGGATATCGCGGCGTTGAACA
TGAAGGCGGGCGATTGGGTGGACCTGGAAAGCCTGTGCGAGGACGGCGTGCGCCGCGAGGCGCGGCGTTTCCTGTTGGTG
GACTACAACATCCCGCGTGGCTGCCTGGCCGCGTACTACCCGGAAACCAATGCGCTGGTGCCGTTGTCCAGTTTCGCCGA
CGAGGCGCGTACGCCGACCTCCAAGTCGATTCCGGTCATCGTGCTGCCGCACCGCGCCGAAACCGCCAATGCGGCGCCGC
GCGATATCGGAGCGGTGCTTGTCCGCTGA

Upstream 100 bases:

>100_bases
GTGCGGGACTGACCCTGATCGGGTTTGCCCGCGATCACGATTGTGTCGTTTACAGCCATCCGCAGCGCCTGGATCTGGGC
GTTGCGGTGGGAGAGCCCGC

Downstream 100 bases:

>100_bases
TCCACAGCTCACCGTGCAGCTGCTGCATGCGCTTGCCGACGCGCCCGGTGGCGTGTCGCTGGCCCGGCTATGCAAGCACC
TGGGCGTGCGCATGAGCGTG

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 782; Mature: 781

Protein sequence:

>782_residues
MSKKTIKQYDNPAGGWGALRSVAKHLMEQDIAVQGAKTLLHANQPDGFDCPGCAWPDRDHTSTFEFCENGAKAVAAESTA
RRAGPELFASHTVSLLSQYSDYWLEGQGRLTHPMRYDAATDHYVPVSWDDAFAQIARHLNGLATPDEAIFYTSGRTSNEA
AFLYQLFVREFGTNNFPDCSNMCHEPSGTALRSQIGVGKGTVSLHDFELADAIFIFGQNPGTNHPRMLGELRQASKRGAA
IAAFNPLRERGLEKFADPQDKLEMLHNGSTRIASDYFQLKIGGDLAAVKGIIKHVLERDAQAQRDGTPRLLDLEFIQAHT
ANFEAFAADVHAERWDTIVEESGLDETALRKAGEIYLNAERVIACWGMGITQHKHSVATIHMITNLLLLRGNLGRPGAGV
CPVRGHSNVQGDRTMMIYEKPPAAFLDKLQSVFGFAPPRADGFDTVGAIEAMLDGRGKVFFAMGGNFAAATPDTDATHRA
LRNCELTVHVTTKLNRSHLVHGRDALILPCLGRTEIDIQDAGAQGVTVEDSMSMVHLSAGINPPASPDLLSEPAIVARMA
EATLGARSAIRWRWLVGDYDRVRDLIAQVFPDFAGFNERVRTPGGFRLSNTARDRNWVTPEQRAVFKPHAVPTDNPIHRA
RRSHAEQMVFTLATTRSHDQYNTTIYGLDDRYRGVFGERRVLFINGADIAALNMKAGDWVDLESLCEDGVRREARRFLLV
DYNIPRGCLAAYYPETNALVPLSSFADEARTPTSKSIPVIVLPHRAETANAAPRDIGAVLVR

Sequences:

>Translated_782_residues
MSKKTIKQYDNPAGGWGALRSVAKHLMEQDIAVQGAKTLLHANQPDGFDCPGCAWPDRDHTSTFEFCENGAKAVAAESTA
RRAGPELFASHTVSLLSQYSDYWLEGQGRLTHPMRYDAATDHYVPVSWDDAFAQIARHLNGLATPDEAIFYTSGRTSNEA
AFLYQLFVREFGTNNFPDCSNMCHEPSGTALRSQIGVGKGTVSLHDFELADAIFIFGQNPGTNHPRMLGELRQASKRGAA
IAAFNPLRERGLEKFADPQDKLEMLHNGSTRIASDYFQLKIGGDLAAVKGIIKHVLERDAQAQRDGTPRLLDLEFIQAHT
ANFEAFAADVHAERWDTIVEESGLDETALRKAGEIYLNAERVIACWGMGITQHKHSVATIHMITNLLLLRGNLGRPGAGV
CPVRGHSNVQGDRTMMIYEKPPAAFLDKLQSVFGFAPPRADGFDTVGAIEAMLDGRGKVFFAMGGNFAAATPDTDATHRA
LRNCELTVHVTTKLNRSHLVHGRDALILPCLGRTEIDIQDAGAQGVTVEDSMSMVHLSAGINPPASPDLLSEPAIVARMA
EATLGARSAIRWRWLVGDYDRVRDLIAQVFPDFAGFNERVRTPGGFRLSNTARDRNWVTPEQRAVFKPHAVPTDNPIHRA
RRSHAEQMVFTLATTRSHDQYNTTIYGLDDRYRGVFGERRVLFINGADIAALNMKAGDWVDLESLCEDGVRREARRFLLV
DYNIPRGCLAAYYPETNALVPLSSFADEARTPTSKSIPVIVLPHRAETANAAPRDIGAVLVR
>Mature_781_residues
SKKTIKQYDNPAGGWGALRSVAKHLMEQDIAVQGAKTLLHANQPDGFDCPGCAWPDRDHTSTFEFCENGAKAVAAESTAR
RAGPELFASHTVSLLSQYSDYWLEGQGRLTHPMRYDAATDHYVPVSWDDAFAQIARHLNGLATPDEAIFYTSGRTSNEAA
FLYQLFVREFGTNNFPDCSNMCHEPSGTALRSQIGVGKGTVSLHDFELADAIFIFGQNPGTNHPRMLGELRQASKRGAAI
AAFNPLRERGLEKFADPQDKLEMLHNGSTRIASDYFQLKIGGDLAAVKGIIKHVLERDAQAQRDGTPRLLDLEFIQAHTA
NFEAFAADVHAERWDTIVEESGLDETALRKAGEIYLNAERVIACWGMGITQHKHSVATIHMITNLLLLRGNLGRPGAGVC
PVRGHSNVQGDRTMMIYEKPPAAFLDKLQSVFGFAPPRADGFDTVGAIEAMLDGRGKVFFAMGGNFAAATPDTDATHRAL
RNCELTVHVTTKLNRSHLVHGRDALILPCLGRTEIDIQDAGAQGVTVEDSMSMVHLSAGINPPASPDLLSEPAIVARMAE
ATLGARSAIRWRWLVGDYDRVRDLIAQVFPDFAGFNERVRTPGGFRLSNTARDRNWVTPEQRAVFKPHAVPTDNPIHRAR
RSHAEQMVFTLATTRSHDQYNTTIYGLDDRYRGVFGERRVLFINGADIAALNMKAGDWVDLESLCEDGVRREARRFLLVD
YNIPRGCLAAYYPETNALVPLSSFADEARTPTSKSIPVIVLPHRAETANAAPRDIGAVLVR

Specific function: Probably involved in acid resistance [H]

COG id: COG0243

COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]

Homologues:

Organism=Escherichia coli, GI1787778, Length=763, Percent_Identity=49.8034076015727, Blast_Score=770, Evalue=0.0,
Organism=Escherichia coli, GI3868721, Length=395, Percent_Identity=28.1012658227848, Blast_Score=149, Evalue=7e-37,
Organism=Escherichia coli, GI1788534, Length=413, Percent_Identity=22.5181598062954, Blast_Score=86, Evalue=7e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009010
- InterPro:   IPR006657
- InterPro:   IPR006656
- InterPro:   IPR010046 [H]

Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]

EC number: NA

Molecular weight: Translated: 86046; Mature: 85915

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKTIKQYDNPAGGWGALRSVAKHLMEQDIAVQGAKTLLHANQPDGFDCPGCAWPDRDH
CCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHEECCCCCCCCCCCCCCCCCCC
TSTFEFCENGAKAVAAESTARRAGPELFASHTVSLLSQYSDYWLEGQGRLTHPMRYDAAT
CHHHHHHHCCCCEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCEECCCCC
DHYVPVSWDDAFAQIARHLNGLATPDEAIFYTSGRTSNEAAFLYQLFVREFGTNNFPDCS
CCEEECCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHH
NMCHEPSGTALRSQIGVGKGTVSLHDFELADAIFIFGQNPGTNHPRMLGELRQASKRGAA
HHCCCCCCCHHHHHCCCCCCEEEEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCE
IAAFNPLRERGLEKFADPQDKLEMLHNGSTRIASDYFQLKIGGDLAAVKGIIKHVLERDA
EEECCHHHHHHHHHHCCHHHHHHHHHCCCCEEECCEEEEEECCCHHHHHHHHHHHHHHHH
QAQRDGTPRLLDLEFIQAHTANFEAFAADVHAERWDTIVEESGLDETALRKAGEIYLNAE
HHHCCCCCCEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEECC
RVIACWGMGITQHKHSVATIHMITNLLLLRGNLGRPGAGVCPVRGHSNVQGDRTMMIYEK
EEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
PPAAFLDKLQSVFGFAPPRADGFDTVGAIEAMLDGRGKVFFAMGGNFAAATPDTDATHRA
CCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCEEECCCCCHHHHHH
LRNCELTVHVTTKLNRSHLVHGRDALILPCLGRTEIDIQDAGAQGVTVEDSMSMVHLSAG
HHCCEEEEEEEEECCCHHEECCCCEEEEECCCCCEEEEECCCCCCCEECCCCCEEEEECC
INPPASPDLLSEPAIVARMAEATLGARSAIRWRWLVGDYDRVRDLIAQVFPDFAGFNERV
CCCCCCCCHHCCCHHHHHHHHHHHCCCHHEEEEEECCCHHHHHHHHHHHHHHHCCCCHHC
RTPGGFRLSNTARDRNWVTPEQRAVFKPHAVPTDNPIHRARRSHAEQMVFTLATTRSHDQ
CCCCCEEECCCCCCCCCCCCCHHCEECCCCCCCCCHHHHHHHHHHHHEEHHEECCCCCCC
YNTTIYGLDDRYRGVFGERRVLFINGADIAALNMKAGDWVDLESLCEDGVRREARRFLLV
CCCEEEECCHHHHCCCCCCEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHCEEEEE
DYNIPRGCLAAYYPETNALVPLSSFADEARTPTSKSIPVIVLPHRAETANAAPRDIGAVL
ECCCCCHHHEEECCCCCCEEECHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCHHHEE
VR
CC
>Mature Secondary Structure 
SKKTIKQYDNPAGGWGALRSVAKHLMEQDIAVQGAKTLLHANQPDGFDCPGCAWPDRDH
CCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHEECCCCCCCCCCCCCCCCCCC
TSTFEFCENGAKAVAAESTARRAGPELFASHTVSLLSQYSDYWLEGQGRLTHPMRYDAAT
CHHHHHHHCCCCEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCEECCCCC
DHYVPVSWDDAFAQIARHLNGLATPDEAIFYTSGRTSNEAAFLYQLFVREFGTNNFPDCS
CCEEECCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHH
NMCHEPSGTALRSQIGVGKGTVSLHDFELADAIFIFGQNPGTNHPRMLGELRQASKRGAA
HHCCCCCCCHHHHHCCCCCCEEEEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCE
IAAFNPLRERGLEKFADPQDKLEMLHNGSTRIASDYFQLKIGGDLAAVKGIIKHVLERDA
EEECCHHHHHHHHHHCCHHHHHHHHHCCCCEEECCEEEEEECCCHHHHHHHHHHHHHHHH
QAQRDGTPRLLDLEFIQAHTANFEAFAADVHAERWDTIVEESGLDETALRKAGEIYLNAE
HHHCCCCCCEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEECC
RVIACWGMGITQHKHSVATIHMITNLLLLRGNLGRPGAGVCPVRGHSNVQGDRTMMIYEK
EEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
PPAAFLDKLQSVFGFAPPRADGFDTVGAIEAMLDGRGKVFFAMGGNFAAATPDTDATHRA
CCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCEEECCCCCHHHHHH
LRNCELTVHVTTKLNRSHLVHGRDALILPCLGRTEIDIQDAGAQGVTVEDSMSMVHLSAG
HHCCEEEEEEEEECCCHHEECCCCEEEEECCCCCEEEEECCCCCCCEECCCCCEEEEECC
INPPASPDLLSEPAIVARMAEATLGARSAIRWRWLVGDYDRVRDLIAQVFPDFAGFNERV
CCCCCCCCHHCCCHHHHHHHHHHHCCCHHEEEEEECCCHHHHHHHHHHHHHHHCCCCHHC
RTPGGFRLSNTARDRNWVTPEQRAVFKPHAVPTDNPIHRARRSHAEQMVFTLATTRSHDQ
CCCCCEEECCCCCCCCCCCCCHHCEECCCCCCCCCHHHHHHHHHHHHEEHHEECCCCCCC
YNTTIYGLDDRYRGVFGERRVLFINGADIAALNMKAGDWVDLESLCEDGVRREARRFLLV
CCCEEEECCHHHHCCCCCCEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHCEEEEE
DYNIPRGCLAAYYPETNALVPLSSFADEARTPTSKSIPVIVLPHRAETANAAPRDIGAVL
ECCCCCHHHEEECCCCCCEEECHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCHHHEE
VR
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]