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The map label for this gene is tonB3 [H]

Identifier: 78047249

GI number: 78047249

Start: 1908171

End: 1908842

Strand: Reverse

Name: tonB3 [H]

Synonym: XCV1693

Alternate gene names: 78047249

Gene position: 1908842-1908171 (Counterclockwise)

Preceding gene: 78047251

Following gene: 78047248

Centisome position: 36.86

GC content: 72.47

Gene sequence:

>672_bases
ATGTCCGCGCCCCGTCCTGCGTCCGATCGCCATATCGTTCTGCGTCTGCCCCGCCACACGCTGAAAATCGCCGGCATCGC
CTTCGCTGCCGGCCTGCTGTTGTTCCTGCTGGTCTGGGCCACCGGCCGCAAGGACGACTTCTATAAAGCCTCGCCGGCGC
AGCCGACCGCAGGCGCGCAGACCGACGACACCATTGCGCCGCTGCCGGCGCCATTGCCCGCCCAGGACGGCGCAAGCGAC
ATGCCGCAGGCCAAGCCGCCGGCCGAAACCCCCACCCTGGTGGACACCGCGCCACCCGCCCCGCCCGCGCCGACGCCGCT
GCCGGAAAATGCGGTACCCGGCGCGCCAGGTGCCGCTGGCAGCGCCGCGCCGGTCAACGCACCGGTCGCTGGCGGCGATC
GCCCGGTACCGATCCAGGGCCAGATGCCGCCGCCCCGCTACCCGTCGGCTGCGCTGCGTCGCGGCGATGCTGGCGATGTG
GTGGTGCGGGTCGACGTGGATGCCGCCGGCAATCCCGGTGGCGTGACCCTGGTGCAGCGCAGCGGCTCGCGCGACCTGGA
CCGTGCGGCCATGGAAGCCGTGCGGCACTGGCGCTTCCACCCGGCGCAGCGCAATGGCCAGCCGGTGGCCGGCAGCATGG
ACATCCCGTTCGAGTTCAAGCCTGCGCAGTAA

Upstream 100 bases:

>100_bases
CGTCAGTGGAATAGCGCGAGATTATCGCCTGTTCCGGCACCTGCTGCGATCGATTCACTACGGCTATGCCAGAATTGCGA
CGATTCTTCAGGTGAGCCCT

Downstream 100 bases:

>100_bases
GTACAGCTAACTCTTCGCGCGTGTTGCTTGTCACTGCCTTGCCGGCGTCCGGGTGCGAGGTGGCAGGCCTTGGCTGACGC
CACGCAGCCACAAACAGCAT

Product: TonB-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MSAPRPASDRHIVLRLPRHTLKIAGIAFAAGLLLFLLVWATGRKDDFYKASPAQPTAGAQTDDTIAPLPAPLPAQDGASD
MPQAKPPAETPTLVDTAPPAPPAPTPLPENAVPGAPGAAGSAAPVNAPVAGGDRPVPIQGQMPPPRYPSAALRRGDAGDV
VVRVDVDAAGNPGGVTLVQRSGSRDLDRAAMEAVRHWRFHPAQRNGQPVAGSMDIPFEFKPAQ

Sequences:

>Translated_223_residues
MSAPRPASDRHIVLRLPRHTLKIAGIAFAAGLLLFLLVWATGRKDDFYKASPAQPTAGAQTDDTIAPLPAPLPAQDGASD
MPQAKPPAETPTLVDTAPPAPPAPTPLPENAVPGAPGAAGSAAPVNAPVAGGDRPVPIQGQMPPPRYPSAALRRGDAGDV
VVRVDVDAAGNPGGVTLVQRSGSRDLDRAAMEAVRHWRFHPAQRNGQPVAGSMDIPFEFKPAQ
>Mature_222_residues
SAPRPASDRHIVLRLPRHTLKIAGIAFAAGLLLFLLVWATGRKDDFYKASPAQPTAGAQTDDTIAPLPAPLPAQDGASDM
PQAKPPAETPTLVDTAPPAPPAPTPLPENAVPGAPGAAGSAAPVNAPVAGGDRPVPIQGQMPPPRYPSAALRRGDAGDVV
VRVDVDAAGNPGGVTLVQRSGSRDLDRAAMEAVRHWRFHPAQRNGQPVAGSMDIPFEFKPAQ

Specific function: Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requirin

COG id: COG0810

COG function: function code M; Periplasmic protein TonB, links inner and outer membranes

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein; Periplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006260 [H]

Pfam domain/function: PF03544 TonB [H]

EC number: NA

Molecular weight: Translated: 23052; Mature: 22921

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPRPASDRHIVLRLPRHTLKIAGIAFAAGLLLFLLVWATGRKDDFYKASPAQPTAGAQ
CCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCC
TDDTIAPLPAPLPAQDGASDMPQAKPPAETPTLVDTAPPAPPAPTPLPENAVPGAPGAAG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
SAAPVNAPVAGGDRPVPIQGQMPPPRYPSAALRRGDAGDVVVRVDVDAAGNPGGVTLVQR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCCCCCCCCEEEEEC
SGSRDLDRAAMEAVRHWRFHPAQRNGQPVAGSMDIPFEFKPAQ
CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCC
>Mature Secondary Structure 
SAPRPASDRHIVLRLPRHTLKIAGIAFAAGLLLFLLVWATGRKDDFYKASPAQPTAGAQ
CCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCC
TDDTIAPLPAPLPAQDGASDMPQAKPPAETPTLVDTAPPAPPAPTPLPENAVPGAPGAAG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
SAAPVNAPVAGGDRPVPIQGQMPPPRYPSAALRRGDAGDVVVRVDVDAAGNPGGVTLVQR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCCCCCCCCEEEEEC
SGSRDLDRAAMEAVRHWRFHPAQRNGQPVAGSMDIPFEFKPAQ
CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]