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The map label for this gene is paiB [H]

Identifier: 78047212

GI number: 78047212

Start: 1865611

End: 1866246

Strand: Reverse

Name: paiB [H]

Synonym: XCV1656

Alternate gene names: 78047212

Gene position: 1866246-1865611 (Counterclockwise)

Preceding gene: 78047213

Following gene: 78047202

Centisome position: 36.04

GC content: 64.31

Gene sequence:

>636_bases
ATGTACGCCCCGCGCGCATTTGCGCAGACCGATCTGGCCTTGCTGGACTGGCTGTTCGCGCGCGATGCGTTCGTCACCCT
GATCAGCCAGGACGAGGACAGGCAGCCGGCGATCTCGCACCTGCCGGTGCTGTATCAGCGCGATGGCCAGGATGTCGTGA
TCGAAGGCCATTGGGCACGCCCCAATCCGCAGGCGCGCACTGCTGGCGACGCGGTCATGGTGTTGCAGGGCCCGCATGCC
TATGTCTCGCCCACCTGGTACCTGGACAAAAACGCAGCTGCGCGTGTGCCCACCTGGAACTACGCCGTTGCGCACCTGCA
TGGACGCTGCAACCAGGTGAGCGATGAAAACGCGCTGGGCAGTCTGATTGCGCGCATGAGCGCGCACTTCGAGCAGCGCG
TGGGCAGCGATTGGCAGTTCGAAATGGAGCGCGACAGTCATCGCCGGCAATTGCGCGGCCTGGTCGGCTTCCGCTTCGTT
CCAAGCCGCATCGAGCTCACCTTCAAGCTGAGCCAGAACCACCCGGCCGGCAATCAACGCAGTGTCGCCCAGTTCCTGAC
GCAGCAAGCCGACCAAGACGCGCACGCCATCGCAGCATTGATGCAGGCGGCGCTGGATGTCGATACGACGCGCTGA

Upstream 100 bases:

>100_bases
ATCCGCGGCTTTTCGCTGCATGAAGTCTCGCCGCCCCAAGGTAACGACGATGCCGAGCTGCGTGCGCGCATGGTCGTGAA
CATGGGCGGCCGCGCCTGAC

Downstream 100 bases:

>100_bases
GGCGGCCGCTTCGTACCCCGAACGGCTAGTCACCAAACGGCTGGGGCGCGTCGGCCACACTGCGGCCGACGCCTGCATCG
GCCCGCGCACAGGTCATTGC

Product: PaiB family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MYAPRAFAQTDLALLDWLFARDAFVTLISQDEDRQPAISHLPVLYQRDGQDVVIEGHWARPNPQARTAGDAVMVLQGPHA
YVSPTWYLDKNAAARVPTWNYAVAHLHGRCNQVSDENALGSLIARMSAHFEQRVGSDWQFEMERDSHRRQLRGLVGFRFV
PSRIELTFKLSQNHPAGNQRSVAQFLTQQADQDAHAIAALMQAALDVDTTR

Sequences:

>Translated_211_residues
MYAPRAFAQTDLALLDWLFARDAFVTLISQDEDRQPAISHLPVLYQRDGQDVVIEGHWARPNPQARTAGDAVMVLQGPHA
YVSPTWYLDKNAAARVPTWNYAVAHLHGRCNQVSDENALGSLIARMSAHFEQRVGSDWQFEMERDSHRRQLRGLVGFRFV
PSRIELTFKLSQNHPAGNQRSVAQFLTQQADQDAHAIAALMQAALDVDTTR
>Mature_211_residues
MYAPRAFAQTDLALLDWLFARDAFVTLISQDEDRQPAISHLPVLYQRDGQDVVIEGHWARPNPQARTAGDAVMVLQGPHA
YVSPTWYLDKNAAARVPTWNYAVAHLHGRCNQVSDENALGSLIARMSAHFEQRVGSDWQFEMERDSHRRQLRGLVGFRFV
PSRIELTFKLSQNHPAGNQRSVAQFLTQQADQDAHAIAALMQAALDVDTTR

Specific function: Involved in the reduction of extracellular and cell- associated protease levels, as well as in the reduced levels of alpha-amylase, levansucrase, alkaline phosphatase and sporulation inhibition, when present in high copy number [H]

COG id: COG2808

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the paiB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007396
- InterPro:   IPR012349
- InterPro:   IPR009002 [H]

Pfam domain/function: PF04299 FMN_bind_2 [H]

EC number: NA

Molecular weight: Translated: 23788; Mature: 23788

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYAPRAFAQTDLALLDWLFARDAFVTLISQDEDRQPAISHLPVLYQRDGQDVVIEGHWAR
CCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHCCEEEECCCCEEEEECCCCC
PNPQARTAGDAVMVLQGPHAYVSPTWYLDKNAAARVPTWNYAVAHLHGRCNQVSDENALG
CCCCCCCCCCEEEEEECCCCEECCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHH
SLIARMSAHFEQRVGSDWQFEMERDSHRRQLRGLVGFRFVPSRIELTFKLSQNHPAGNQR
HHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHEECCCEEEEEEEECCCCCCCCHH
SVAQFLTQQADQDAHAIAALMQAALDVDTTR
HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MYAPRAFAQTDLALLDWLFARDAFVTLISQDEDRQPAISHLPVLYQRDGQDVVIEGHWAR
CCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHCCEEEECCCCEEEEECCCCC
PNPQARTAGDAVMVLQGPHAYVSPTWYLDKNAAARVPTWNYAVAHLHGRCNQVSDENALG
CCCCCCCCCCEEEEEECCCCEECCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHH
SLIARMSAHFEQRVGSDWQFEMERDSHRRQLRGLVGFRFVPSRIELTFKLSQNHPAGNQR
HHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHEECCCEEEEEEEECCCCCCCCHH
SVAQFLTQQADQDAHAIAALMQAALDVDTTR
HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2108124; 9384377 [H]